BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352457
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2... 989 0.0
AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2... 839 0.0
> AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2765962-2767957
REVERSE LENGTH=930
Length=930
Score = 989 bits (535), Expect = 0.0
Identities = 731/822 (89%), Gaps = 28/822 (3%)
Strand=Plus/Plus
Query 70 AACTGGTTGGATCTTCCGCCGGAGTTGACGACTTCGATCCTGCTCCGACTTAGCGTGACT 129
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 AACTGGGTGGATCTTCCGCCGGAGTTGACGACTTCGATCCTGCTCCGACTTAGCGTGACT 174
Query 130 GATATACTGGATAACGCTCGGAAGGTGTGCAGA-CAGTGGCGACGCGTATGTAAAGACCC 188
||||||||||||||||||||||| |||||||| | ||||||||| | |||||||||||
Sbjct 175 GATATACTGGATAACGCTCGGAAACTGTGCAGAGC-GTGGCGACGTATCTGTAAAGACCC 233
Query 189 TTCGATGTGGCAGAAAATCAACTTGCGAGACTGCCT-ATTCTATCG-GTTCGATTTCGAG 246
||| ||||||| |||||||||||||||||||||||| || || || |||||||||||||
Sbjct 234 TTCCATGTGGCGGAAAATCAACTTGCGAGACTGCCTCATG-TA-CGAGTTCGATTTCGAG 291
Query 247 GGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGATTGCTAGAGATTAACATTGAA 306
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 292 AGCATGTGCCGTCACATTGTTGATCTCAGCCAAGGTGGCTTGCTAGAGATTAACATTGAA 351
Query 307 CATTTCGTGAGCGATTCTCTCCTGAGCTACATCGCCGATAGATCAAGTAATCTGAAAAGT 366
|| |||||||||||||||||||| || ||||||| |||||||||| ||||||||||||||
Sbjct 352 CACTTCGTGAGCGATTCTCTCCTCAGTTACATCGTCGATAGATCATGTAATCTGAAAAGT 411
Query 367 CTTGGACTTTCAATCTATGAACCAATGACGAACAAAGGAGTTATGAACGGGATCGCA-AA 425
|||||| |||||||||||||||||||||||||||||||||| |||||||| |||| | ||
Sbjct 412 CTTGGAATTTCAATCTATGAACCAATGACGAACAAAGGAGTAATGAACGGAATCG-AGAA 470
Query 426 ATTTCCATTGCTTGAAACCCTCGAGGTCTTTCACTCATCGCTTAAACTGGATTTGAAAGC 485
| ||||| |||||||||| |||| | |||| ||||| ||| ||||||||||||| |||||
Sbjct 471 ACTTCCACTGCTTGAAACTCTCGTGATCTTCCACTCCTCGATTAAACTGGATTTAAAAGC 530
Query 486 TATAGGCCACGTTTGCCCACAGCTAAAGACATTGAAGCTAAACTCCTTATGCTGCCCAGG 545
|||||||| | |||||||| ||||||||||||||||||||||||||| ||| | ||
Sbjct 531 AATAGGCCATGCATGCCCACAACTAAAGACATTGAAGCTAAACTCCTTAGGCT-C--AGA 587
Query 546 GCCGGCCCATGGCAATTATGCCATAAGCCAGTTAGGCGACATGCCCCCTCTCGTCGAATG 605
|| |||||||| | | ||||||||| ||||| |||| |||| | || |||||||
Sbjct 588 GCTGGCCCATG--A------C-ATAAGCCAGGTAGGCTACATTCCCC-T-TC-TCGAATG 635
Query 606 TGATGATGATGCTCTAGCAATCGCTGAAAGCATGCCCAAACTACGCCACCTCCAGCTTAT 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 TGATGATGATGCTCTAGCAATCGCTGAAAGCATGCCCAAACTACGCCACCTCCAGCTTAT 695
Query 666 GGGGAACGGACTAACCAATACAGGCTTGAATGTCATTCTCGACCGCTGTCCTCACCTGGA 725
||| |||||||||||||| || |||||||||| |||||| ||| | ||||||||||||||
Sbjct 696 GGGTAACGGACTAACCAACACTGGCTTGAATGCCATTCTTGACGGTTGTCCTCACCTGGA 755
Query 726 A---CACCTTGATGTACGCAAGTGTTTCAACATGAACCTTGTCGGGAATCTTGAGAAGCG 782
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 756 AGAACACCTTGATGTACGCAAGTGTTTCAACATTAACCTTGTCGGGAATCTTGAAAAGCG 815
Query 783 ATGTTTGGAGAGGATCAAAGAGTTGAGACG-CCCCGGTGACTCAACCGCCGATTACCCAT 841
|||| || |||||||||||||||||||||| |||| ||||||||| || |||||||| |
Sbjct 816 ATGTATGAAGAGGATCAAAGAGTTGAGACGGCCCCA-TGACTCAACTGCGGATTACCCGT 874
Query 842 ATAATATCGGTGTGTCAGTTATGCTTCAGATCATGATTTCAT 883
||| |||| |||||||| | || ||||||| |||||| |||
Sbjct 875 ATAGTATCAGTGTGTCAATGGTGGTTCAGATGATGATTACAT 916
> AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2763256-2765351
REVERSE LENGTH=915
Length=915
Score = 839 bits (454), Expect = 0.0
Identities = 693/804 (86%), Gaps = 33/804 (4%)
Strand=Plus/Plus
Query 58 AAAGAGC-AACGAAACTGGTTGGATCTTCCGCCGGAGTTGACGACTTCGATCCTGCTCCG 116
||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 121 AAAGAGCGAA-GAAACTGGGTGGATCTTCCGCCGGAGCTGACGACTTCGATCCTGCTGCG 179
Query 117 ACTTAGCGTGACTGATATACTGGATAACGCTCGGAAGGTGTGCAGACAGTGGCGACGCGT 176
|||||| |||||||||||||||| ||||||| ||||||||| | | ||||||||||| |
Sbjct 180 TCTTAGCCTGACTGATATACTGGACAACGCTCAGAAGGTGTGTAAAGAGTGGCGACGCAT 239
Query 177 ATGTAAAGACCCTTCGATGTGGCAGAAAATCAACTTGCGAGACTGCCT-ATTCTATC-GG 234
|||||||||||||||||||||| |||||||||| |||||||||||| | | || |
Sbjct 240 TTGTAAAGACCCTTCGATGTGGCGGAAAATCAACACGCGAGACTGCCTCA-TGTA-CAAC 297
Query 235 TTCGATTTCGAGGGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGATTGCTAGAG 294
|| ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 TTTGATTTCGTGAGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGCTTGCTAGAG 357
Query 295 ATTAAC-AT--TGAACATTTCGTGAGCGATTCTCTCCTGAGCTACATCGCCGATAGATCA 351
|| ||| | |||||| ||| |||||||||||||||| |||||||| |||||||
Sbjct 358 ATCAACGTTGATGAACACTTCTTGAGCGATTCTCTCCTCAGCTACATTACCGATAG---- 413
Query 352 AGTAATCTGAAAAGTCTTGGACTTTCAATCT-ATGAACCAA---TGACG-AACAAAGGAG 406
| ||||||| ||||||||||||| ||| | | |||| ||||| ||| |||||
Sbjct 414 -G-AATCTGAGAAGTCTTGGACTTGGAATGTGCT-TTCCAAGGGTGACGAAAC-TAGGAG 469
Query 407 TTATGAACGGGATCGCAAAATTTCCATTGCTTGAAACCCTCGAGGTCTTTCACTCATCGC 466
|| |||||| || |||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 470 TTGTGAACGCAATTGCAAAAATTCCATTGCTTGAAACCCTCGAGGTCACTCACTCAT-G- 527
Query 467 T-T-AAACTGGATTTGAAAGCTATAGGCCACGTTTGCCCACAGCTAAAGACATTGAAGCT 524
| | ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 528 TATAAAACTGGATTTAAAAGCTATAGGCCACGCTTGCCCACAGCTAAAGACATTGAAGCT 587
Query 525 AAACTCCTTATGCTGCCCAGGGCCGGCCCA-TGGCAATTATGCCAT-AAGCCAGTTAGGC 582
|||||||||| || ||| | |||| ||| | || ||| |||| || || | ||||| |
Sbjct 588 AAACTCCTTAGGCCGCCTATGGCCAGCC-AGTGACAAGTATGACAGCAA-CGTGTTAGAC 645
Query 583 GACATGCCCCCTCTCGTCGAATGTGATGATGATGCTCTAGCAATCGCTGAAAGCATGCCC 642
|| ||| ||||||| ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 646 GATATGGGGCCTCTCG---AATGTGATGATGATGCTTTAGCAATTGCTGAAAGCATGCCC 702
Query 643 AAACTACGCCACCTCCAGCTTATGGGGAACGGACTAACCAATACAGGCTTGAATGTCATT 702
||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||| ||||
Sbjct 703 AAACTACACCACCTCCAGCTTATGGCTAACAGACTAACCAACACAGGCTTGAATGCCATT 762
Query 703 CTCGACCGCTGTCCTCACCTGGAACACCTTGATGTACGCAAGTGTTTCAACATGAACCTT 762
|||||| | |||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 763 CTCGACGGTTGTCCTCACCTGGAACACCTTGATGTACGCAAGTGTTTCAGGATTAGCCTT 822
Query 763 GTCGGGAATCTTGAGAAGCGATGTTTGGAGAGGATCAAAGAGTTGAGACGCCCCGGTGAC 822
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 823 GTCGGGAATCTTGAGAAGCGATGTTTGGAGATGATCAAAGAGTTGAGACGCCCCGGTGAC 882
Query 823 TCAACCGCCGATTACCCATATAAT 846
|||||||| |||||||||||||||
Sbjct 883 TCAACCGCAGATTACCCATATAAT 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5