BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352459
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05490.1 | Symbols: | RNI-like superfamily protein | chr4:2... 734 0.0
> AT4G05490.1 | Symbols: | RNI-like superfamily protein | chr4:2771044-2772252
REVERSE LENGTH=924
Length=924
Score = 734 bits (397), Expect = 0.0
Identities = 539/608 (89%), Gaps = 7/608 (1%)
Strand=Plus/Plus
Query 1 ATGAAAGGTGAAGAAGAGCCATCAAACTGGGCGGAGCTACTGCCGGATTTGCTGTCTTCG 60
|||||||| |||||| |||| ||||||||||||||||||| |||||||||||||||||
Sbjct 52 ATGAAAGGCGAAGAAAAGCCTTCAAACTGGGCGGAGCTACCCCCGGATTTGCTGTCTTCA 111
Query 61 ATTCTACTCCGGCTTGGCCCGTTAGAGATACTTCAAAACGCTCAGAAAGTATGCAGACCG 120
||||||||||| ||| |||| || ||||||||| ||||||||| ||||||||||||| ||
Sbjct 112 ATTCTACTCCGTCTTAGCCCATTGGAGATACTTGAAAACGCTCGGAAAGTATGCAGATCG 171
Query 121 TTGCGACGCGTCTCTAAAGACCCATGGATTTGGCGTAAAATCGACATGAGAAACCTGAGA 180
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 172 TGGCGACGCGTCTCTAAAGACCCATTGATTTGGCGTAGAATCGACATGAGAAACCTGAGA 231
Query 181 AAATTATACTGTATTTTCGATATGGAAGCCTGTTGTCGTCACGTCGTTGATCTCAGCCAG 240
| ||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 232 AGATTGTACTGTATTTACGCTATGGAAGCCTGTTGTCGTCACGTCGTTGATCTCAGCCAG 291
Query 241 GGAGGGTTGCTTGAGATCAACATTGATCAGTGGCAATTTGAGAACACTTGTCTCCTCAAT 300
||||| ||||||||| |||||||||||||||||| ||| ||| ||||| ||| |||||
Sbjct 292 GGAGGCTTGCTTGAGTTCAACATTGATCAGTGGCGCTTTCAGACCACTTCTCTACTCAAC 351
Query 301 TACATCGCCGACAGATCAAGTAATCTGAGACGCCTTAGACTTAGAGGTGGCCAAATAACG 360
||||| ||||| |||||||||||||||||||| ||||| ||| |||||| |||||||||
Sbjct 352 TACATGGCCGAGAGATCAAGTAATCTGAGACGTCTTAGGGTTAAAGGTGGTCAAATAACG 411
Query 361 AGCGTTGGAATTTTTGTAGCAGTCGTGAAACTTCCATTGCTTGAAGAACTCGAGCTTTTG 420
|| ||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||
Sbjct 412 AGTGTTGGAATTTTTGAAGCAATCGTGAAACTGCCATTGCTTGAAGAACTCGAGCTTTTG 471
Query 421 CACTGCTCAATCGAAGATGAGCATTTGAAAGCTATAGGCCAGTCTTGTCCAAATCTGAAG 480
|||||||||||||||| |||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 472 TACTGCTCAATCGAAGAAGAGCATTTCAAAACTATAGGCCAGGCTTGTCCAAATCTGAAG 531
Query 481 ATATTGAAGCTAAGCTCAGTGGGTTACAGGCTTCCTCTAAATGTGAGAGACAATAATGCT 540
| |||||| ||| | | | ||||| || || |||||||| ||| |||||| |||||
Sbjct 532 ACATTGAAACTA-G-T--G-GGGTTTT-GGAGTCATCTAAATGAGAGTGACAATGATGCT 585
Query 541 CTAGCAATTGCTGAAACAATGTCTGGTCTTCTCCACCTCCAGCTTATTGGGAACACACTA 600
|||||||||||||| || ||| |||||||||||||||||||||||||| | ||| ||||
Sbjct 586 CTAGCAATTGCTGACACCATGCCTGGTCTTCTCCACCTCCAGCTTATTAGTAACGGACTA 645
Query 601 AACCAACA 608
| ||||||
Sbjct 646 A-CCAACA 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5