BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352465
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03620.1 | Symbols: | myosin heavy chain-related | chr4:160... 1513 0.0
> AT4G03620.1 | Symbols: | myosin heavy chain-related | chr4:1607040-1608665
REVERSE LENGTH=1029
Length=1029
Score = 1513 bits (819), Expect = 0.0
Identities = 897/934 (96%), Gaps = 8/934 (1%)
Strand=Plus/Plus
Query 1 ATGAGCCGTCTCCGAGCATTTTCTGCGCCGGATTTAGTTCCTTCTGATTCTGGATCTATT 60
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 97 ATGAGCCGTCTCCGAGCATTTTCTGCGCCGGATTTAGTCCCTTCAGATTCTGGATCTATT 156
Query 61 ACATCATCACCAACAAGAACCATAGAGCACCAATCTCATGAAGATTCTGGTTTAGAAGGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 157 ACATCATCACCAACAAGAACCATAGAGCACCAATCTCATGAAGATTCTGGTTTGGAAGGA 216
Query 121 ATCACTACGAACGTGAAGCTACTGCTGAAACTCGTTCAAGATCACAACGAAGCAACCTCG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 217 ATCACTACGAACGTGAAGCTACTGCTGAAACTCGTTCAAGATCACAACGAAGCAACATCG 276
Query 181 AGGCACCACGATGATTGGAAGGTCCAGAGAGTCAACACGATGATGACGATTCTCGATGAT 240
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 277 AGGCACCACGATGATTGGAAAGTTCAGAGAGTCAACACTATGATGACGATTCTCGATGAT 336
Query 241 CTAAAGACACGAATCCAGAAAGCTCAACAACAATCATCATCTGGGAAAAAAGAGCTTAGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 CTAAAGACACGAATCCAGAAAGCTCAACAACAATCATCATCTGGGAAAAAAGAGCTTAGA 396
Query 301 CGATGCTTCACAGATCTGAAACCGG-GTCATGATCTAACCAAGAGTCCAACAAAGCCGCC 359
||||||| ||| ||||||||| ||| ||| ||||||||||||||||||||||||||| ||
Sbjct 397 CGATGCTACACCGATCTGAAA-CGGAGTCCTGATCTAACCAAGAGTCCAACAAAGCCACC 455
Query 360 ACAGAACGATCCTGAAGATATTCAGAAACTGAGAAAAGAGTTAAGCGCGAGTATGGCTGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 ACAGAACGATCCTGAAGATATTCAGAAACTGAGAAAAGAGTTAAGCGCGAGTATGGCTGC 515
Query 420 AAGAAAGAGTCTTCAAATGATGTGTTCGAGTTTAGGGAAGGAGAAAGAGATTATGGCTTT 479
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 516 AAGAAAGAGTCTTCAAATGATGTGTTCAAGTTTAGGGAAGGAGAAAGAGATAATGGCTTT 575
Query 480 GGAGCTTTCGAGGAAAGCTCACGAATTGAACGAAATGGAGGAGCTTATAAGTGATTTTAG 539
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 576 GGAGCTTTCGAGGAAAGCTCACGAATTAAACGAAATGGAGGAGCTTGTAAGTGATTTTAG 635
Query 540 GGCTCAAAATGAGAAATTACTTAAGAAAGTGCAGAATTGCGCGGCAGAGCATAATAAGGA 599
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 636 GGCTCAAAATGAGAAATTACTTAAGAAAGTGCAGAATTGCGCGGTAGAGCATAATAAGGA 695
Query 600 GAAGAAAGGAGATGTTGATTGTCCA-G---A-G-GACAACAATGTGCCTCTACAGGGAAG 653
|||||||| |||| ||||| ||||| | | | ||||||||||||||||||||||||||
Sbjct 696 GAAGAAAGAAGATATTGATGGTCCAGGTCCAGGAGACAACAATGTGCCTCTACAGGGAAG 755
Query 654 AAACAAAGAGTTATCTGAACAGCTTCTCAAGTCTATTGACGGATACCGATCTTTGAAAAG 713
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||
Sbjct 756 AAACAAAGAGTTGTCTGAACAGCTACTCAAATCTATTGACGGATACCGATCTCTGAAAAG 815
Query 714 GAAATACAAAGATGTTCAAGAAGAAAATGGATCAATGAGACGAGCGCTTAGAGATTATGC 773
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 816 GAAATACAAAGATGTTCAAGACGAAAATGGATCAATGAGACGAGCGCTTAGAGATTATGC 875
Query 774 AGAAGGAGTGAATGTTGGGACTCAGAGACTAACCAAGTTGCATGAAAAGATCACAAGAAA 833
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 876 AGAAGGAGTGAATGTTGGGACTCAGAGACTAACCAAGTTGCATGAAAAGATCACAAGAGA 935
Query 834 AGATGAAGTGAATATTGAGAATGAGATTTCAGATTTAGAGAAGTTGTTTCAAGGGCTTGG 893
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 936 AGATGAAGTGAATATTGAGAATGAGATTTCAAATTTAGAGAAGTTGTTTCAAGGGCTTGG 995
Query 894 TTTAAAGATTTCGAATCATTCCCAAAAGAAGTAA 927
||||||||||| |||||||||||| || ||||||
Sbjct 996 TTTAAAGATTTTGAATCATTCCCAGAACAAGTAA 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5