BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg352483

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G36130.1 | Symbols:  | Ribosomal protein L2 family | chr4:17...   191    5e-48
  AT1G25260.1 | Symbols:  | Ribosomal protein L10 family protein ...   104    7e-22


> AT4G36130.1 | Symbols:  | Ribosomal protein L2 family | chr4:17097565-17098879 
FORWARD LENGTH=1048
Length=1048

 Score =  191 bits (103),  Expect = 5e-48
 Identities = 115/121 (95%), Gaps = 0/121 (0%)
 Strand=Plus/Plus

Query  4    AAGTTGCCATCGGGTTCGAAAAAGATTGTGCCAAGTGGATGCATGGCCATGATTGGTCAA  63
            |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct  493  AAGTTGCCATCGGGTTCGAAGAAGATTGTGCCAAGTGGATGCAGGGCCATGATTGGTCAA  552

Query  64   GTTGCAGGTGGTGGAAGAACTGAGAAGCCGATGCTAAATGCTGGTAACACATACCACAAG  123
            |||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||
Sbjct  553  GTTGCAGGTGGTGGAAGAACAGAGAAGCCGATGCTCAAGGCTGGTAACGCATACCACAAG  612

Query  124  T  124
            |
Sbjct  613  T  613


> AT1G25260.1 | Symbols:  | Ribosomal protein L10 family protein 
| chr1:8853959-8855872 REVERSE LENGTH=1018
Length=1018

 Score =  104 bits (56),  Expect = 7e-22
 Identities = 83/94 (88%), Gaps = 10/94 (11%)
 Strand=Plus/Plus

Query  121  AAGTTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGT---G-A-----T  171
            ||||||||||||||||||||||||||||||||||||||||||||||||   | |     |
Sbjct  299  AAGTTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGTTCTGCAGAAGAT  358

Query  172  GAATTCCGTTCTGGTATCTACAA-GTCTCCAAGC  204
            ||| ||||||||||||||||||| ||||||||||
Sbjct  359  GAACTCCGTTCTGGTATCTACAAAGTCTCCAAGC  392



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20810848086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5