BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352501
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03340.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2213 0.0
AT1G03520.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1075 0.0
> AT4G03340.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr4:1467727-1470080
REVERSE LENGTH=2100
Length=2100
Score = 2213 bits (1198), Expect = 0.0
Identities = 1301/1351 (96%), Gaps = 5/1351 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAAAGTGTATAGGAAGCTGATTTGGATCAGAGACCCATTAGCGAGAGTGAAGAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 616 ATGAAGAAAGTGTATAGGAAGCTGATTTGGATCAGAGACCCATTAGCGAGATTGAAGAGA 675
Query 61 CATGTTAGTTCACATTCAGGGTTTAGGGTTTTCAGAGATAGAAGAAAATGGATGTTCCCG 120
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 676 CATGTTAGTTCACATTCAGGGTTTAGGTTTTTCAGAGAT---AGAAAATGGATGTTCCCT 732
Query 121 TTTTTAGCAAGCTTTGTTTTGTCGGTTACTCTTTTGATGTCTGTCATTTATGTCCAATTC 180
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 733 TTTTTAGCAAGCTTGGTTTTGTCGGTTACTCTTTTGATGTCTGTCCTTTATGTCCAACTC 792
Query 181 GACACTTCTTATGTGGAAGAACCATTGCCTTTTGATAATGTCTTAGAAGAATCAAATGAT 240
|| ||||||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||
Sbjct 793 GAGACTTCTTATGTGGAAGAGCCATTGCCTTTTGATAATCTCTCAGAAGAAACAAATGAT 852
Query 241 TACTTTGTAGAATCACGTTTGAGAATGTCTTTGAATTCGACG-GGGAATTCGAATTCTTC 299
|||||||||||||||| |||||||||||||||||||||||| || |||||| ||||||
Sbjct 853 TACTTTGTAGAATCACAATTGAGAATGTCTTTGAATTCGACGTTGG-ATTCGACTTCTTC 911
Query 300 AGAGGTTCCTAGGTTAGCTTATCTGATCTCGGGGACGAAAGGTGATAGTCTTAGGATGAT 359
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 912 AGAGGTTCCTAGGTTAGCTTATTTGATCTCGGGGACGAAAGGTGATAGTCTTAGGATGAT 971
Query 360 GAGGACTTTGCAAGCTGTGTATCATCCAAGAAATCAATATGTTCTGCATTTGGATCTCGA 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 972 GAGGACTTTGCAAGCTGTGTATCATCCAAGAAATCAGTATGTTCTGCATTTGGATCTTGA 1031
Query 420 AGCTCCTCCTAAGGAAAGGCTTGAACTTGCAATGTCTGTGAAGAGTGATCCGACTTTCCG 479
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1032 AGCTCCTCCTAAGGAAAGGCTTGAGCTTGCAATGTCTGTGAAGAGTGATCAAACTTTCCG 1091
Query 480 TGAATTTGAGAACGTTCGTGTTATGTCTCAGTCTAATCTGGTTACTTATAAAGGCCCTAC 539
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1092 TGAAGTTGAGAACGTTCGTGTTATGTCTCAGTCTAATTTGGTTACTTATAAAGGCCCTAC 1151
Query 540 AATGATTGCTTGTACGCTTCAGGCCGTGGCGATTTTGCTTAAAGAAAGTTTGGATTGGGA 599
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1152 AATGATTGCTTGCACGCTTCAGGCCGTGGCGATTTTGCTTAAAGAAAGCTTGGATTGGGA 1211
Query 600 TTGGTTCATCAACCTTAGTGCCTCGGATTATCCTCTCGTGACACAAGATGATATGCTGTA 659
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1212 TTGGTTCATCAATCTTAGTGCCTCGGATTATCCTCTTGTGACACAAGATGATATGCTGTA 1271
Query 660 TGTCTTCGCGAAATTGTCTCGGAATGTCAATTTCATTGAACATATGAAGCTCACCGGGTG 719
||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 TGTGTTTGCGAATTTGTCTCGGAATGTCAATTTCATTGAACATATGAAGCTCACCGGGTG 1331
Query 720 GAAACTGAACCAGAGGGCCAAATCAATCATTGTTGATCCCGGTCTGTACCTATCGAAGAA 779
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1332 GAAACTGAACCAAAGGGCCAAATCAATCATTGTTGATCCCGGTCTTTACCTATCGAAGAA 1391
Query 780 AACCGAAATTGCTTGGACTACTCAACACCGTTCACTTCCCACATCTTTCACGCTGTTCAC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 AACCGAAATTGCTTGGACTACTCAACACCGTTCACTTCCCACATCTTTCACGCTGTTCAC 1451
Query 840 AGGCTCGGCGTGGGTAGTTCTGACTCGGTCTTTTCTTGAATACTCAATCTTGGGATGGGA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 AGGCTCGGCGTGGGTAGTTCTGACTCGGTCTTTTCTTGAATACTCAATCTTGGGATGGGA 1511
Query 900 TAATTTTCCGAGGACAATATTAATGTACTACACCAACTTTGTATCCTCTCCAGAAGGGTA 959
|||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||
Sbjct 1512 CAATTTTCCGAGGACGATCTTGATGTACTACACCAACTTTGTATCCTCTCCAGAAGGATA 1571
Query 960 CTTTCACACAGTCATATGTAACACTGAAGAGTTCAAGAGCACCGCGATTGGGCATGACCT 1019
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 CTTTCACACACTGATATGTAACACTGAAGAGTTCAAGAGCACCGCGATTGGGCATGACCT 1631
Query 1020 GCACTACATTGCTTGGGACTATCCTCCAAAGCAACACCCAAACTCTTTATCGATGAAGGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 GCACTACATTGCTTGGGACTATCCTCCAAAGCAACACCCAAACTCTTTATCGATGAAGGA 1691
Query 1080 TTTCGACAAGATGGTCAAAAGCAAAGCCCCATTTGCTCGAAAGTTCCACAAGAACGATCC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 TTTCGACAAGATGGTCAAAAGCAAAGCCCCATTTGCTCGAAAGTTCCACAAGAACGATCC 1751
Query 1140 TGTATTAGACAAGATCGATAGAGAGCTCTTAGGCCGCACTCATCGGTTTTCCTCAGGATC 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1752 TGTATTAGACAAGATCGATAGAGAGCTCTTAGGCCGCACTCATCGGTTTTCCTCAGGAGC 1811
Query 1200 TTGGTGCATTGGTAGCTCGGAAAATGGCGCTGATCCGTGCTCTGTCCGGGGGGATGACTC 1259
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1812 TTGGTGCATTGGTAGCTCGGAAAATGGCGCTGATCCGTGCTCTGTCCGCGGGGATGACTC 1871
Query 1260 TGTTTTGAAACCAGGCCCTGGTGCGGAGAGATTAAAGGAGCTTGTTCAGACACTTTTATC 1319
|| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1872 TGCTTTGAAACCAGGCCCTGGTGCTGAGAGATTAAAGGAGCTTCTTCAGACACTTTTATC 1931
Query 1320 TGATGAGTTCAGAACAAAACAATGTTCATGA 1350
|||||||||||||| ||||||||||||||||
Sbjct 1932 TGATGAGTTCAGAATAAAACAATGTTCATGA 1962
> AT1G03520.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr1:877862-880158
REVERSE LENGTH=2035
Length=2035
Score = 1075 bits (582), Expect = 0.0
Identities = 1119/1372 (82%), Gaps = 62/1372 (5%)
Strand=Plus/Plus
Query 7 AAAGTGTATAGGAAGCTGATTTGGA-TCAGAGACCCATTAGCGAGAGTGAAGAGACATGT 65
||| |||||||||||||| ||| | ||||||||||||| || || || |||||||||||
Sbjct 612 AAATTGTATAGGAAGCTGGTTT-CATTCAGAGACCCATTTGCTAGGGTCAAGAGACATGT 670
Query 66 TAGTTCACATTCAGGGTTTAGGGTTTTCAGAGATAGAAGAAAATGGATGTTCCCGTTTT- 124
||||||||||||||||||||| | |||||| | | ||||||||| ||||||| ||||
Sbjct 671 TAGTTCACATTCAGGGTTTAGAGCTTTCAGCG--A-CAGAAAATGGTTGTTCCC-TTTTC 726
Query 125 TAGCAAGCTTTG-TTTTGTCGGTTACTCTTTTGATGTCTG-TCATTTATGTCCAATTCGA 182
|||| ||| ||| | |||| |||||||| |||| | || | |||| || |||||||||
Sbjct 727 TAGCTAGC-TTGATCATGTCCATTACTCTTCTGAT-TTTGTTAATTTCTGGCCAATTCGA 784
Query 183 C-ACTTCTTATGTGGAAG-A-A-CCATTGCCTTTTGATAATGTCTTAGAAGAATCAAATG 238
| ||||||| || ||||| | | | ||| || ||||| ||| || ||| || ||||
Sbjct 785 CAACTTCTT-TGGGGAAGAAGATCAATTACCAGTTGATGTTGT-TT--CAGAGTCTAATG 840
Query 239 ATTACTTTGTAGAATCACG-TTT-GAG-AATGTCTTTGAATTCGACGG-GGAAT-TCGAA 293
| ||||||||||||||| | ||| || || ||| |||||||||||| | || | ||
Sbjct 841 ACTACTTTGTAGAATCA-GATTTCAAGCAA--TCTATGAATTCGACGGCTG-ATGT-TAA 895
Query 294 TTCTTCAGAGGTTCCTAGGTTAGCTTATCTGATCTCGGGGACGAAAGGTGATAGTCTTAG 353
|| ||||| |||||| ||||||||| | || ||||| || ||||| ||||||| |||
Sbjct 896 -TC--CAGAGCCTCCTAGATTAGCTTATTTAATATCGGGAACAAAAGGCGATAGTCATAG 952
Query 354 GATGATGAGGACTTTGCAAGCTGTGTATCATCCAAGAAATCAATATGTTCTGCATTTGGA 413
||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct 953 GATGATGAGGACTTTACAAGCTGTGTACCATCCTAGAAACCAGTATGTTCTGCATTTGGA 1012
Query 414 TCTCGAAGCTCCTCCTAAG-GAAAGGCTTGAACTTGCAATGTCTGTGAAGAGTGATCCGA 472
||| || ||||| ||| | ||| || | || || || ||||| ||||||| ||||||||
Sbjct 1013 TCTTGAGGCTCCACCT-CGAGAACGGATGGAGCTGGCCATGTCCGTGAAGACTGATCCGA 1071
Query 473 CTTTCCGTGAATTTGAGAACGTTCGTGTTATGTCTCAGTCTAATCTGGTTACTTATAAAG 532
||||||||||| | ||||| |||||||| ||| ||||||||||||| |||||||||||||
Sbjct 1072 CTTTCCGTGAAATGGAGAATGTTCGTGTGATGGCTCAGTCTAATCTTGTTACTTATAAAG 1131
Query 533 GCCCTACAATGATTGCTTGTACGCTTCAGGCCGTGGCGATTTTGCTTAA-AGAAAGTTTG 591
|||||||||||||||||||||| ||||| ||||| | || ||||| || |||||| ||
Sbjct 1132 GCCCTACAATGATTGCTTGTACTCTTCAAGCCGTTTCAATCTTGCT-AAGAGAAAGCTTA 1190
Query 592 GATTGGGATTGGTT-CATCAACCTTAGTGCCTCGGATTATCCTCTCGTGACACAAGATGA 650
||||||||||||| | | |||||||||||||||||||||||||| || |||||||||||
Sbjct 1191 CATTGGGATTGGTTTCTT-AACCTTAGTGCCTCGGATTATCCTCTAGTAACACAAGATGA 1249
Query 651 TATGCTGTATGTCTTCGCGAAAT-TGTCTCGGAATGTCAATTTCATTGA-ACATATGAAG 708
| || ||||||||||| | |||| |||||||||||||||||||||| || | ||||| ||
Sbjct 1250 TTTGTTGTATGTCTTCTC-AAATCTGTCTCGGAATGTCAATTTCATCGAGA-ATATGCAG 1307
Query 709 CTCACCGGGTGGAAACTGAACCAGAGGGCCAAATCAATCATTGTTGATCCCGGTCTGTAC 768
|||||||| ||||||||||| |||||||| |||||||||||||||||||| | || |||
Sbjct 1308 CTCACCGGATGGAAACTGAATCAGAGGGCTAAATCAATCATTGTTGATCCTGCCCTATAC 1367
Query 769 CTATCGAAGAAAACCGAAATTGCTTGGACTACTCAACACCGTTCACTTCCCACAT-CTTT 827
|||||||||||| |||| || |||||||||||||||| || |||||||| | || ||||
Sbjct 1368 CTATCGAAGAAATCCGATATCGCTTGGACTACTCAACGGCGATCACTTCCAA-ATTCTTT 1426
Query 828 CACGCTGTTCACAGGCTCGGCGTGGGTAGT-TCTGACTCGGTCTTTTCTTGAATACT-CA 885
|| ||| ||||| ||||| || ||| || | | ||||||||||||| || || |||| ||
Sbjct 1427 CAGGCTATTCACTGGCTCAGCTTGGATAATGT-TGACTCGGTCTTTCCTCGAGTACTGCA 1485
Query 886 ATCTTGGG-ATGGGATAATTTTCCGAGGACAATATTAATGTACTACACCAACTTT-GTAT 943
| ||||| |||||||||||| || || |||||| ||||||||||||| || ||| ||||
Sbjct 1486 -T-TTGGGGATGGGATAATTTCCCAAGAACAATACTAATGTACTACACAAA-TTTCGTAT 1542
Query 944 CCTCTCCAGAAGGGTACTTTCACACAGTCATATGTAACA-CTGAAGAGTTCAAGAGCACC 1002
| ||||| ||||| ||||| |||||||| || || |||| | ||||||| | | |||
Sbjct 1543 CTTCTCCTGAAGGATACTTCCACACAGTAATCTGCAACAGCA-AAGAGTTTATCAACACT 1601
Query 1003 GCGATTGGGCATGACCTGCACTACATTGCTTGGGACTA-TCCTCCAAAGCAACACCCAA- 1060
|| || || || ||||| |||||||||||||||||| | |||||||||||||||||| |
Sbjct 1602 GCAATCGGTCACGACCTTCACTACATTGCTTGGGAC-AGTCCTCCAAAGCAACACCCTAG 1660
Query 1061 ACTCTTTATCGATGAAGGATTTCGACAAGATGGTCAAAAGCAAAGCCCCATTTGCTCGAA 1120
| ||| | ||| |||||||||| ||||| |||||||| |||||||| |||||||| || |
Sbjct 1661 A-TCTCTCTCGTTGAAGGATTTTGACAATATGGTCAAGAGCAAAGCTCCATTTGCACGCA 1719
Query 1121 AGTTCCACAAGAACGATCCTGTATTAGACAAGATCGATAGAGAGCTCTTAGGCCGCACTC 1180
|||||||||| |||||||||| |||||||||||||||| |||||| || || || || |
Sbjct 1720 AGTTCCACAAAAACGATCCTGCGTTAGACAAGATCGATAAAGAGCTATTGGGACGGACAC 1779
Query 1181 ATCGGTTTTC-CTCAGGATCTTGGTGCATTGGTAGCTCGGAAAATGGCGCTGATCCGTGC 1239
| |||||| | | ||||| ||||| | || || || | |||||| ||||| ||||
Sbjct 1780 ACCGGTTTGCAC-CAGGAGGATGGTGTGTCGGGAGTTCAGCTAATGGCAATGATCAGTGC 1838
Query 1240 TCTGTCCGGGGGGATGACTCTGTTTTGAAACCAGGCCCTGGTGCGGAGAGATTAAAGGAG 1299
||||| | || || ||||| || ||||||||||| |||||| | ||||| || |||||
Sbjct 1839 TCTGTGCAAGGTGACGACTCGGTGTTGAAACCAGGACCTGGTTCTGAGAGGTTGCAGGAG 1898
Query 1300 CTTGTTCAGACACTTTTATCTGATGAGTTCAGAAC-AAAACAATGTTCATGA 1350
|||||||| ||||||| ||||| || || || | |||||| ||||| |||
Sbjct 1899 CTTGTTCAAACACTTTCCTCTGAAGAATTTAGG-CGAAAACAGTGTTCTTGA 1949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5