BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352535
Length=2331
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02900.1 | Symbols: | ERD (early-responsive to dehydration ... 3677 0.0
> AT4G02900.1 | Symbols: | ERD (early-responsive to dehydration
stress) family protein | chr4:1284066-1287747 FORWARD LENGTH=2358
Length=2358
Score = 3677 bits (1991), Expect = 0.0
Identities = 2217/2323 (95%), Gaps = 28/2323 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCAGTACAAGATATTGGTCTATCTGCAGCTATCAATCTTTTATCTGCATTTGCT 60
||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 1 ATGGCTTCAGTACAAGATATTGGTCTATCAGCAGCTATAAATCTATTATCTGCATTTGCT 60
Query 61 TTCTTGTTTGCATTTGCTATGCTTAGACTTCAGCCTGTTAACGATAGAGTTTACTTCCCT 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 TTCTTGTTTGCATTTGCTATGCTTAGACTTCAGCCAGTTAACGATAGAGTTTACTTCCCA 120
Query 121 AAATGGTATCTCAAAGGGATACGAGGAAGTCCAACGCGTTCTAGAGGAATCATGACTAGA 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATGGTATCTCAAAGGGATAAGAGGAAGTCCAACGCGTTCTAGAGGAATCATGACTAGA 180
Query 181 TTTGTTAATTTAGATTGGACTACTTATGTCAAGTTTCTTAATTGGATGCCTGCAGCGCTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 181 TTTGTTAATTTAGATTGGACTACTTATGTCAAGTTTCTTAATTGGATGCCTGCTGCTCTT 240
Query 241 AAAATGCCTGAACCCGAGCTTATCGAACATGCAGGGCTCGATTCTGCTGTATATATCCGC 300
||||||||||||| |||||||| ||||||||||| || || ||||||||||||||||||
Sbjct 241 CAAATGCCTGAACCTGAGCTTATAGAACATGCAGGCCTTGACTCTGCTGTATATATCCGC 300
Query 301 ATTTACCTTCTCGGATTGAAAATGTTCGTCCCGATAACACTACTTGCTTTTGGAGTTTTG 360
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 ATTTACCTTCTTGGATTGAAAATGTTCGTTCCGATAACACTACTTGCTTTTGGAGTTTTG 360
Query 361 GTTCCTGTCAATTGGACAGGAGAAACGCTAGAAAATATCGATGACTTGACATTCAGTAAC 420
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 GTTCCTGTCAATTGGACTGGAGAAACTCTAGAAAATATCGATGACTTGACATTCAGTAAC 420
Query 421 GTCGACAAGCTTTCAATATCGAATGTTCCACCAGGATCGCCAAGGTTTTGGGCTCATATA 480
||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 421 GTCGATAAGCTGTCAATATCAAATGTTCCACCAGGATCGCCGAGGTTTTGGGCACATATA 480
Query 481 ACTATGACATACGTGTTTACACTCTGGACTTGCTACATATTATACATGGAATATAAGACT 540
||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||| ||
Sbjct 481 ACTATGACATACGTGATTACATTCTGGACTTGCTACATATTATATATGGAATATAAGGCT 540
Query 541 GTGGCTAATATGAGATTGAGACATCTAGCAGCAGAAAGTCGTCGTCCTGATCAACTCACG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGGCTAATATGAGATTGAGACATCTAGCAGCAGAAAGTCGTCGTCCTGATCAACTCACT 600
Query 601 GTACTCGTGAGAAATGTTCCTCCAGATCCTGATGAATCAGTAAACGAGCATGTGGAGCAC 660
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 GTACTTGTAAGAAATGTTCCTCCAGATCCTGATGAATCAGTAAACGAGCATGTTGAGCAC 660
Query 661 TTCTTTTGTGTAAATCATCCAGATCATTATCTTTGTCATCAGGCACGTTTCTTTAGCTGG 720
||||||||||||||||||||||||||||||||||| | || || |
Sbjct 661 TTCTTTTGTGTAAATCATCCAGATCATTATCTTTG----C---CA----TC---A----- 701
Query 721 CTGAATGTAGTGTACAATGCAAATGACCTTGCAAAATTAGTCGCACAGAGAAAAGCTATG 780
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 --G---GTAGTGTACAATGCAAATGACCTTGCAAAATTAGTCGCACAGAGAAAAGCTATG 756
Query 781 CAAAATTGGCTGACTTACTACGAGAATAAATTTGAGAGGAAGCCATCAAGTAGGCCAACA 840
||||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 757 CAAAATTGGTTGACGTACTACGAGAATAAATTCGAGAGGAAGCCATCAAGTAGACCAACA 816
Query 841 ACAAAGACAGGTTATGGAGGTTTTTGGGGAACTACAGTTGATGCGATTGACTTCTATACT 900
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 817 ACAAAGACAGGTTATGGAGGTTTTTGGGGAACTACAGTTGATGCAATTGACTTCTACACT 876
Query 901 TCAAAGATGGATATTTTGGCTCG-GCAAGAGGCTGTAGAAAGAGAAAAGATCATGAACGA 959
||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 877 TCAAAGATGGATATTCTGGCT-GAGCAAGAAGCTGTAGAAAGAGAAAAGATCATGAACGA 935
Query 960 TCCTAAGTCTATCATGCCGGCAGCATTTGTTTCCTTCAGATCACGGTGGGGAACAGCTGT 1019
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 TCCTAAGGCTATCATGCCGGCAGCATTTGTTTCCTTCAGATCACGGTGGGGAACAGCTGT 995
Query 1020 TTGTGCTCAAACGCAGCAATGCCACAATCCCACAATATGGTTGACGGAATGGGCTCCCGA 1079
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 996 TTGTGCTCAAACACAGCAATGCCACAATCCCACAATCTGGTTGACGGAATGGGCTCCCGA 1055
Query 1080 ACCACGCGATGTTTTCTGGGATAATCTCGCTATTCCATATGTTGAGCTCTCAATAAGAAG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 ACCACGCGATGTTTTCTGGGATAATCTCGCTATTCCATATGTTGAGCTCTCAATAAGAAG 1115
Query 1140 ATTGCTCACAACAGTTGCACTGTTTTTTCTTATTTTCTGCTTCATGATTCCTATAGCATT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 ATTGCTCACAACAGTTGCACTGTTTTTTCTTATTTTCTGCTTCATGATTCCTATAGCATT 1175
Query 1200 TGTTCAGTCTCTTGCAAACCTTGAAGGGATCCAAAAAGTTCTCCCTTTCTT-AAAGCCTG 1258
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 1176 TGTTCAGTCTCTTGCCAACCTTGAAGGGATCCAAAAAGTTCTCCCTTTCTTGAAACCC-G 1234
Query 1259 TAATAGAAATGAAGACTGTAAAGTCTGTAATCCAAGGGTTTCTTCCAGGAATAGCGTTAA 1318
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 TGATAGAAATGAAGACTGTAAAGTCTGTAATCCAAGGGTTTCTTCCAGGAATAGCGTTAA 1294
Query 1319 AGATTTTTCTCATCATACTTCCGACTATTCTGATGACAATGTCACAAATTGAAGGATATA 1378
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1295 AGATTTTTCTCATCATACTTCCAACTATTCTGATGACAATGTCACAAATTGAAGGATATA 1354
Query 1379 CATCGCTGTCCTATTTAGATAGAAGATCAGCTGAAAAGTATTTCTGGTTCATTATTGTCA 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 CATCGCTGTCCTATTTAGATAGAAGATCAGCTGAAAAGTATTTCTGGTTCATTATTGTCA 1414
Query 1439 ATGTCTTTCTTGGAAGCATCATTACCGGGACAGCATTTCAGCAGCTTAAATCTTTCCTTG 1498
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1415 ATGTCTTTCTTGGAAGCATCATTACCGGGACAGCGTTTCAGCAGCTTAAATCTTTCCTTG 1474
Query 1499 AGCAACCACCAACCGAGATCCCGAAAACAGTTGGTGTGTCAATCCCAATGAAGGCCACAT 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 AGCAACCACCAACCGAGATCCCGAAAACAGTTGGTGTGTCAATCCCAATGAAGGCCACAT 1534
Query 1559 TTTTCATCACTTATATCATGGTGGATGGTTGGGCTGGCATTGCAGCTGAGATACTCAGAG 1618
|||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1535 TTTTCATCACATATATCATGGTCGATGGTTGGGCTGGCATAGCAGCTGAGATACTCAGAG 1594
Query 1619 TGGTTCCATTAGTCATTTTTCATCTGAAAAACACGTTTTTGGTTAAGACAGAACAAGACA 1678
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1595 TGGTTCCATTAGTCATCTTTCACCTGAAAAACACGTTTTTGGTTAAGACAGAACAAGACA 1654
Query 1679 GGCAGCAAGCAATGGATCCAGGACATCTGGACTTTGCAACATCTGAACCACGGATTCAGT 1738
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1655 GGCAGCAAGCAATGGATCCAGGTCATCTGGACTTTGCAACATCTGAACCACGGATTCAGT 1714
Query 1739 TCTATTTCTTGCTAGGCCTTGTATACGCTGCTGTTGCGCCAATTCTTCTTCCATTTATTA 1798
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 1715 TCTATTTCTTGCTAGGCCTCGTATACGCTGCTGTTGCGCCAATTCTCCTTCCATTCATTA 1774
Query 1799 TCGTCTTCTTTGCTTTCGCCTACGTTGTTTTCCGACATCAGGTTATAAATGTCTACGACC 1858
||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct 1775 TCGTCTTCTTTGCTTTCGCATACGTTGTTTTTCGGCATCAGGTTATTAATGTCTACGACC 1834
Query 1859 AAAAATATGAGAGTGGGGCTAGATACTGGCCAGACGTGCATAGACGTTTGATCATATGTT 1918
| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1835 AGAAATATGAGAGCGGGGCTAGATACTGGCCTGACGTGCATAGACGTTTGATCATATGTC 1894
Query 1919 TAATAATATCACAGCTTCTGATGATGGGTTTGCTCAGCACAAAGAAATTTGCAAAAGTAA 1978
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1895 TAATAATATCACAGCTTCTGATGATGGGTCTGCTCAGCACAAAGAAATTTGCAAAAGTAA 1954
Query 1979 CAGCCCTGCTTCTCCCTCAGCCTATCTTAACCTTTTGGTTTTACAGATACTGCGCAGGAC 2038
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1955 CAGCTCTGCTTCTCCCTCAGCCTATCTTAACCTTTTGGTTTTACAGATACTGCGCAGGAC 2014
Query 2039 GGTTTGAATCGGCCTTCTCAAAATTTCCCTTACAGGAAGCAATGGTGAAGGATACACTAG 2098
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2015 GGTTTGAATCGGCCTTCTCAAAATTTCCTTTACAGGAAGCAATGGTGAAGGATACACTAG 2074
Query 2099 AAAAAGCGACTGAACCAAATCTAAACCTCAAGGAATATCTGAAAGAGGCTTACGTGCATC 2158
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2075 AAAAAGCAACTGAACCGAATCTAAACCTCAAGGAATATCTGAAAGATGCTTACGTGCATC 2134
Query 2159 CGGTTTTCAAAGGCAATGATTTTGACCGACCACGAGCAGTCGATGAGGAGGAAAGCAATC 2218
||||||| |||||||||||||||||||||||||| | |||||||||||||||||| || |
Sbjct 2135 CGGTTTTTAAAGGCAATGATTTTGACCGACCACGGGTAGTCGATGAGGAGGAAAGTAACC 2194
Query 2219 CTCTTGTAAGGACCAAGAGGACTTCTCAAGGTACGACCCGATACAACTCAGAAGCTAGTA 2278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2195 CTCTTGTAAGGACCAAGAGGACTTCTCAAGGTACGACCCGATACAACTCAGAAGCTAGTA 2254
Query 2279 GCTCTGCTACAGCCACTCCTGTAGCCAACACTGGCTCTCCTAG 2321
||||||||||| |||||||||||||||||| || |||||||||
Sbjct 2255 GCTCTGCTACAACCACTCCTGTAGCCAACAATGACTCTCCTAG 2297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115712256225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5