BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352538
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 451 7e-126
AT2G36920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 147 4e-34
> AT4G02870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: response to cadmium ion;
LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured
cell; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT1G78640.1); Has 55 Blast hits to 51 proteins
in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr4:1271654-1272746 REVERSE LENGTH=933
Length=933
Score = 451 bits (244), Expect = 7e-126
Identities = 427/510 (84%), Gaps = 34/510 (7%)
Strand=Plus/Plus
Query 771 AGAAATGCAGGGTGAAGGATATGGCACACACACTTGTGGCCCTTTGGAAAACAAGATTGA 830
|||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||
Sbjct 408 AGAAATGCAGGGTGAAGGATATGGCACAAACACTCGTGGCCCTTTCGAAAACAAGATTGA 467
Query 831 TATTGCTGTTGGTTCTTTTGGAAAC-GTTGGATCGATTATGAACGCAGAAAGAGAGAAAG 889
||||| ||| |||||||||| || || ||| | ||||||| ||||||||||||||
Sbjct 468 TATTG--GTT----CTTTTGGAAAGAGTGGG-TCGGTGATGAACGTAGAAAGAGAGAAAG 520
Query 890 AAAAGACTGTGATGATCCCTACCCCTAGATTTGTCGAGGCA-C-C-ACAATGGACCATAA 946
|||||| |||||||||||||||||| ||||||| | | ||| | | ||||||||||||||
Sbjct 521 AAAAGATTGTGATGATCCCTACCCCAAGATTTGGCAACGCAACACCACAATGGACCATAA 580
Query 947 AGAAGAAGCTGACC-CAGTACGATACTAATCCTCATTATGACAGACTTATTCTGCAAAAG 1005
||||||| |||| | | |||||||| || |||| || || ||||||||||||||||| |
Sbjct 581 AGAAGAAACTGAGCTC-GTACGATATTAGGCCTCGTTGTGGCAGACTTATTCTGCAAA-G 638
Query 1006 -AGCTCCTTTGATGAGCACATTGGAAGACATTTGCCTAAAGCAGATTACCAAAAGGTAGT 1064
||||||||| |||||||||||||||||||||| ||||||| | ||||| | ||
Sbjct 639 TAGCTCCTTTAATGAGCACATTGGAAGACATTTACCTAAAG-A-----CCAAATGATAAA 692
Query 1065 AGATAAAA-TCGGAACCACGACTGTTAACGTATATGACTACGACACGGACACAATGCATG 1123
| || || ||||| || | |||||||||||||||||||||||||| |||| ||||||
Sbjct 693 A-ATTAATGTCGGAGTCA--A-TGTTAACGTATATGACTACGACACGGGCACATTGCATG 748
Query 1124 AGCTGCGTCTGGAAT-T-AGAGAAAAGCTATGGTCTAAG-G-AGTGGTTGGCTGGAACAT 1179
||||||||||||||| | |||| || ||||||||| | | | ||| |||| ||| ||
Sbjct 749 AGCTGCGTCTGGAATATCAGAGGCAA--TATGGTCTA-GCGCA-TGGCTGGCAAGAAGAT 804
Query 1180 TTTGTTCGCAGGAGATGCTTGAGGCAAAACGAAGAGATTGGACTCTTATGGGATTCTTCT 1239
||||| ||||||||| ||||| |||||| || |||||||||||||||||||||| ||||
Sbjct 805 TTTGTCCGCAGGAGACACTTGAAGCAAAAAGACGAGATTGGACTCTTATGGGATTTTTCT 864
Query 1240 GCTTCTAGGATTCAGTTTGGCGTCATTTCT 1269
|||||||| |||| |||||||||||||||
Sbjct 865 TCTTCTAGGCTTCAATTTGGCGTCATTTCT 894
Score = 224 bits (121), Expect = 2e-57
Identities = 192/225 (85%), Gaps = 10/225 (4%)
Strand=Plus/Plus
Query 289 ACAGATGAAGAAGTCTTTAAGGGATATGAATCGTACAGGGAAAACCC-AGATTACTACGA 347
||||||||||||||||| ||||||||||||||||||||||||||||| || | |||||||
Sbjct 103 ACAGATGAAGAAGTCTTGAAGGGATATGAATCGTACAGGGAAAACCCAAG-TAACTACGA 161
Query 348 CAGTGACAAAATCCTTATCA-ACACTGAAAACACGTTGAATCCTTATGGTGACATGTTCG 406
|| ||| || |||||||| | |||| | ||||||| |||| ||||| |||||||||||
Sbjct 162 CAATGATAATATCCTTAT-ATACAC---AGACACGTTCAATCTTTATGATGACATGTTCG 217
Query 407 AAGGTTCTCTTGATTCTGCAGGGTACATTGGTTCACAAAACGATCATGATGCGCTCGAGA 466
||||||||||||||||| || || || ||||| ||||||| |||| | ||| ||||| ||
Sbjct 218 AAGGTTCTCTTGATTCTACAAGGAACTTTGGTGCACAAAAAGATCCTAATGTGCTCGTGA 277
Query 467 TGCCAAGGTTGACGTTACACAACTCTGGAAGTCAAATTGGTGTTG 511
||| |||| || ||||||||||| ||||||| |||||||||||
Sbjct 278 TGCAAAGGCTG---TTACACAACTCCGGAAGTCTAATTGGTGTTG 319
Score = 171 bits (92), Expect = 2e-41
Identities = 133/152 (88%), Gaps = 6/152 (4%)
Strand=Plus/Plus
Query 549 AGAAATGCAGGGTGAAGGATATGGGACAAACACTTGTGGCCCTTGCGAAAACAAGATTGA 608
|||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||
Sbjct 408 AGAAATGCAGGGTGAAGGATATGGCACAAACACTCGTGGCCCTTTCGAAAACAAGATTGA 467
Query 609 TATTGCTGCTGGTTCTGTTGGAAACATTGAATCCTTGATGAACGCAGAAAGAGAGAAAGA 668
|| | ||||||| ||||||| | || || ||||||||| |||||||||||||||
Sbjct 468 TA----T--TGGTTCTTTTGGAAAGAGTGGGTCGGTGATGAACGTAGAAAGAGAGAAAGA 521
Query 669 AAAGATTGTGATGATCCCTACCCCTGGATTTG 700
|||||||||||||||||||||||| ||||||
Sbjct 522 AAAGATTGTGATGATCCCTACCCCAAGATTTG 553
> AT2G36920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G02870.1); Has 13 Blast
hits to 11 proteins in 2 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:15508798-15509850
FORWARD LENGTH=1053
Length=1053
Score = 147 bits (79), Expect = 4e-34
Identities = 373/508 (73%), Gaps = 47/508 (9%)
Strand=Plus/Plus
Query 781 GGTGAAGGATATGGCACACACACTTGTGGCCCTTT-GGA-AAACAAGATTGATATTGCTG 838
||||||| | |||||||| ||| || || | |||| ||| | |||| | | ||| ||
Sbjct 395 GGTGAAGAACATGGCACAAACAATTCTGACACTTTGGGAGACCCAAG--TAACATTTCTC 452
Query 839 TTGGTTCTTTTGGAAACGTTGGATCGATTA-TGAACGCAGAAAGAGA-GAAAGAAAAGAC 896
|| ||| |||||| | | ||| ||| | || |||| | || |||||| | || | |||
Sbjct 453 TTCGTTGTTTTGGGAGCATTGAATCCA-TATTGAAGGTAGCAAGAGATGGAA-TAGAGAT 510
Query 897 TGTGATGATCCCTACCCCTAGATTTGT---CGAGGCACCACAATGGACCATAAAGAAGAA 953
| |||||| |||| ||||||| |||| | | ||||| ||||||||||| |||||| |
Sbjct 511 TACGATGATGCCTATCCCTAGACTTGTCAACAACGCACCTCAATGGACCATCAAGAAG-A 569
Query 954 G-CTGACCCAGTACGATACTAATCCTCA-TTAT-GACAGACTTATTCTG-CAAAAGAGCT 1009
| |||||| || | || ||| ||| | |||| | || |||| |||| | | | ||||
Sbjct 570 GACTGACCGAGCATAATGTTAACCCT-ACTTATGGCCA-ACTTCGTCTGCCCAGA-AGCT 626
Query 1010 CCTTTGATGAGCACATTGGAAGACATTTGCCTAAAGCAGATTACCAAAAGGTAGTAGATA 1069
||| || |||| ||| || ||||| ||||| |||| || | | | | |
Sbjct 627 TCTTCGAACAGCAGATTCGAGGACATCTGCCTGAAGCTGA-T---------T--T-G-CA 672
Query 1070 AAATCGGAACCACGACTGTTAACGTATATGACTACGACACGGA-CACAATGCATGAGCTG 1128
||| ||| | | | | |||||| ||||| ||| ||||||| || ||||||||||||||||
Sbjct 673 AAAGCGG-A-CTC-ATTGTTAAGGTATAGGACAACGACAC-GAGCACAATGCATGAGCTG 728
Query 1129 CGTCTGGAATTAGAGA-AAAGCTATGGTCTAA-GGAGTGGTTGGCTGGAACATTTTGTTC 1186
||||||| | || | | | | ||||| ||||| || ||| ||||||||| ||||| | |
Sbjct 729 CGTCTGGCAGTACA-ATATACCTATGTTCTAACGG-GTGACTGGCTGGAAGATTTTATCC 786
Query 1187 -GCAGGAGATGCTTG-AGGCAAA-ACGAAGAGATTGGACTCTTATGGGATTCTTCTGCTT 1243
|||||| | ||| | | ||| | || || || |||||||||||||||||||||||||
Sbjct 787 AAAAGGAGAAGTTTGAAAG-AAAGA-GACGATATAGGACTCTTATGGGATTCTTCTGCTT 844
Query 1244 CTAGGATTCAGTTTGGCGTCATTTCTCG 1271
||||| |||| |||||||| ||| ||||
Sbjct 845 CTAGGCTTCACTTTGGCGTGATTGCTCG 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5