BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352546
Length=2229
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02780.1 | Symbols: GA1, ABC33, ATCPS1, CPS, CPS1 | Terpenoi... 3197 0.0
> AT4G02780.1 | Symbols: GA1, ABC33, ATCPS1, CPS, CPS1 | Terpenoid
cyclases/Protein prenyltransferases superfamily protein
| chr4:1237767-1244813 REVERSE LENGTH=2570
Length=2570
Score = 3197 bits (1731), Expect = 0.0
Identities = 1930/2027 (95%), Gaps = 10/2027 (0%)
Strand=Plus/Plus
Query 1 ATGTCTCTTCAATATCATGCTCTAAACTCCATTCAAAGTACAAACTTTCTCAGTTCTACT 60
||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 48 ATGTCTCTTCAGTATCATGTTCTAAACTCCATTCCAAGTACAACCTTTCTCAGTTCTACT 107
Query 61 AAAACAACATTATCTTCTTCTTTCCTTACAATCTCAGGATCTCCTCTCAATGTCGCTAGA 120
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 108 AAAACAACAATATCTTCTTCTTTCCTTACCATCTCAGGATCTCCTCTCAATGTCGCTAGA 167
Query 121 GACAAACCCAGAAGCGGTTCTATATATTGTTCAAAGCTTCGAACTCAAGAATACACTACT 180
|||||| ||||||||||||| ||| |||||||||||||||||||||||||||||| || |
Sbjct 168 GACAAATCCAGAAGCGGTTCCATACATTGTTCAAAGCTTCGAACTCAAGAATACATTAAT 227
Query 181 TCTCAGGAGGTTCAACATGATCTGCCTCTAATAC---AGTGGCAACAGCTTCAAAGAGAA 237
||||| ||||||||||||||| |||||||||||| ||||||||||||||||| |||||
Sbjct 228 TCTCAAGAGGTTCAACATGATTTGCCTCTAATACATGAGTGGCAACAGCTTCAAGGAGAA 287
Query 238 GATGCTCCTCAGATTAGTATTGGAAGTAATAATAATGCGA-TCGAAGAAGCAGTGAAGAG 296
|||||||||||||||||| |||||||||||| |||||| | || ||||||||||||||||
Sbjct 288 GATGCTCCTCAGATTAGTGTTGGAAGTAATAGTAATGC-ATTCAAAGAAGCAGTGAAGAG 346
Query 297 TGTGAAATCGATCTTGAGAAACCTAACTGACGGGGAAATTACGATATCGGCTTATGATAC 356
||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 347 TGTGAAAACGATCTTGAGAAACCTAACGGACGGGGAAATTACGATATCGGCTTACGATAC 406
Query 357 CGCTTGGGTTGCATTGATCGATGCCGGAGACAAAACTCCGGCGTTTCCCTCGGCCGTGAA 416
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 407 AGCTTGGGTTGCATTGATCGATGCCGGAGATAAAACTCCGGCGTTTCCCTCCGCCGTGAA 466
Query 417 ATGGATCGCCGAGAACCAACTCTCCGATGGTTCTTGGGGTGACGCTTATCTCTTCTCTTA 476
||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||
Sbjct 467 ATGGATCGCCGAGAACCAACTTTCCGATGGTTCTTGGGGAGATGCGTATCTCTTCTCTTA 526
Query 477 TCATGATCGTCTCATCAATACACTTGCATGCGTCGTTGCTCTAAGATCATGGAATCTTTT 536
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 527 TCATGATCGTCTCATCAATACCCTTGCATGCGTCGTTGCTCTAAGATCATGGAATCTCTT 586
Query 537 TCCTCATCAATGCCACAAAGGAATCACGTTTTTCCGGGAAAATATTGGAAAGCTAGAAGA 596
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 587 TCCTCATCAATGCAACAAAGGAATCACGTTTTTCCGGGAAAATATTGGGAAGCTAGAAGA 646
Query 597 CGAAAACGATGAGCATATGCCCATCGGATTTGAAGTAGCATTCCCATCGTTGCTTGAGAT 656
|||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 647 CGAAAATGATGAGCATATGCCAATCGGATTCGAAGTAGCATTCCCATCGTTGCTTGAGAT 706
Query 657 AGCTCGAGAAATAAACATTGATGTACCGTACGATTCTCCAGTCTTAAAAGATATATACGC 716
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 707 AGCTCGAGGAATAAACATTGATGTACCGTACGATTCTCCGGTCTTAAAAGATATATACGC 766
Query 717 CAAGAAAGAGCTAAAGCTAACAAGGATACCAAAAGAGATAATGCACAAGATACCAACAAC 776
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 767 CAAGAAAGAGCTAAAGCTTACAAGGATACCAAAAGAGATAATGCACAAGATACCAACAAC 826
Query 777 ATTGTTGCATAGTTTGGAGGGGATGCGTGATTTAGATTGGGAAAAGCTCTTGAAACTTCA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 ATTGTTGCATAGTTTGGAGGGGATGCGTGATTTAGATTGGGAAAAGCTCTTGAAACTTCA 886
Query 837 ATCTCAAGACGGATCTTTCCTCTTCTCTCCTTCCTCTACCGCTTTTGCATTCATGCAGAC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 ATCTCAAGACGGATCTTTCCTCTTCTCTCCTTCCTCTACCGCTTTTGCATTCATGCAGAC 946
Query 897 CCGAGACAGTAACTGCCTCCG-GTATTTGCGAAATGCCGTCAAACGTTTCAATGGAGGAG 955
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 947 CCGAGACAGTAACTGCCTC-GAGTATTTGCGAAATGCCGTCAAACGTTTCAATGGAGGAG 1005
Query 956 TTCCCAATGTCTTTCCGGTGGATCTTTTCGAGCACATATGGATAGTGGATCGGCTACAAC 1015
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1006 TTCCCAATGTCTTTCCCGTGGATCTTTTCGAGCACATATGGATAGTGGATCGGTTACAAC 1065
Query 1016 GGTTAGGGATATCAAGATACTTCGAGGAAGAGATTAAAGAGTGTCTTGACTATGTTCACA 1075
| ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 1066 GTTTAGGGATATCGAGATACTTTGAAGAAGAGATTAAAGAGTGTCTTGACTATGTCCACA 1125
Query 1076 GATATTGGACCGACAAAGGCATATGTTGGGCTAGATGTTCCCATGTTCAAGACATCGACG 1135
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1126 GATATTGGACCGACAATGGCATATGTTGGGCTAGATGTTCCCATGTCCAAGACATCGATG 1185
Query 1136 ATACAGCAATGGCATTTAGGCTCTTAAGACTTCATGGATACCAAGTTTCCGCAGATGTAT 1195
||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1186 ATACAGCCATGGCATTTAGGCTCTTAAGACAACATGGATACCAAGTGTCCGCAGATGTAT 1245
Query 1196 TCAAGAACTTTGAGAAAGAGGGGGAGTTTTTCTGTTTTGTGGGGCAATCAAACCAAGCGG 1255
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 1246 TCAAGAACTTTGAGAAAGAGGGAGAGTTTTTCTGCTTTGTGGGGCAATCAAACCAAGCAG 1305
Query 1256 TGACTGGTATGTTCAATCTATACCGGGCATCACAATTGGCGTTTCCAAGGGAAGATATAT 1315
| || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1306 TAACCGGTATGTTCAACCTATACCGGGCATCACAATTGGCGTTTCCAAGGGAAGAGATAT 1365
Query 1316 TGAAAAACGCCAAAGAGTTCTCTAATAAGTATCTGCAAGGAAAACGAGAGAGAGACGAGT 1375
||||||||||||||||||| ||| |||| ||||||| || |||||| |||||||| ||||
Sbjct 1366 TGAAAAACGCCAAAGAGTTTTCTTATAATTATCTGCTAGAAAAACGGGAGAGAGAGGAGT 1425
Query 1376 TGATTGATAAGTGGATTATAATGAAAGACTTACCTGGCGAGATTGGCTTTGCGTTAGAGA 1435
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1426 TGATTGATAAGTGGATTATAATGAAAGACTTACCTGGCGAGATTGGGTTTGCGTTAGAGA 1485
Query 1436 TTCCATGGTACGCAAGCTTGCCTCGAGTTGAGACGAGATTCTATATTGATCAATATGGTG 1495
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1486 TTCCATGGTACGCAAGCTTGCCTCGAGTAGAGACGAGATTCTATATTGATCAATATGGTG 1545
Query 1496 GAGAAAACGACGTTTGGATTGGCAAGACTCTTTATAGGATGCCATACGTGAACAATAATG 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 GAGAAAACGACGTTTGGATTGGCAAGACTCTTTATAGGATGCCATACGTGAACAATAATG 1605
Query 1556 GATATCTGGAATTAGCAAAACAAGATTACAACAATTGCCAAGCTCTGCATCAGCTCGAAT 1615
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1606 GATATCTGGAATTAGCAAAACAAGATTACAACAATTGCCAAGCTCAGCATCAGCTCGAAT 1665
Query 1616 GGGACACATTCCAAAAGTGGTATGAAGAAAATAGGTTAAATGAGTGGGGTGTGCGCAGAA 1675
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1666 GGGACATATTCCAAAAGTGGTATGAAGAAAATAGGTTAAGTGAGTGGGGTGTGCGCAGAA 1725
Query 1676 ATGAGCTTCTCGAGTGTTACTTCTTAGCGGCTGCAACTATATTTGAATCAGAAAGGTCAC 1735
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1726 GTGAGCTTCTCGAGTGTTACTACTTAGCGGCTGCAACTATATTTGAATCAGAAAGGTCAC 1785
Query 1736 ATGAGCGAATGGTTTGGGCTAAGTCAAGTGTTTTGGTTAAAGCCATTTCTTCTT-TT--G 1792
||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct 1786 ATGAGAGAATGGTTTGGGCTAAGTCAAGTGTATTGGTTAAAGCCATTTCTTCTTCTTTTG 1845
Query 1793 GGAAATCCTCTGACTCCAGAAGAAGCTTCTCCGAGCAGTTTCATAAATACATTGCCAATG 1852
|| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1846 GGGAATCCTCTGACTCCAGAAGAAGCTTCTCCGATCAGTTTCATGAATACATTGCCAATG 1905
Query 1853 CTCGACGAAGTGATCATCACTTCAATGGCAGGAGCATGAGATTGGACCGACCAGGATCGG 1912
|||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 1906 CTCGACGAAGTGATCATCACTTTAATGACAGGAACATGAGATTGGACCGACCAGGATCGG 1965
Query 1913 TTCAGGCGAGTCGGCTTGTCGGAATCTTAATCGGAACTTTGAATCAAATGTCTTTTGACC 1972
||||||| |||||||||| |||| | |||||||| |||||||||||||||||||||||||
Sbjct 1966 TTCAGGCCAGTCGGCTTGCCGGAGTGTTAATCGGGACTTTGAATCAAATGTCTTTTGACC 2025
Query 1973 TTTTCATGTCTCATGGCCGTGACGTTTACAATCTCCTCTATCAATCG 2019
|||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 2026 TTTTCATGTCTCATGGCCGTGACGTTAACAATCTCCTCTATCTATCG 2072
Score = 335 bits (181), Expect = 1e-90
Identities = 201/211 (95%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 2019 GGCAAGGAGAAACGATGAGAAGGAGAAGACAATAAGGAGTATGGAGACGGAGATGGAGAA 2078
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 2249 GGCAAGGAGAAACGATGAGAAGGAGAAGACAATAAAGAGTATGGAGAAGGAGATGGGGAA 2308
Query 2079 AATGGTTGAGTTAGCATTGTCGGAGAGTGACACATTTCGTGTCGTCAGCATAACGTTTCT 2138
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 2309 AATGGTTGAGTTAGCATTGTCGGAGAGTGACACATTTCGTGACGTCAGCATCACGTTTCT 2368
Query 2139 TGATGTAGCAAAAGCGTTTTACTACTCTGCTTCATGTGGCGATCACCTCCAAACTCACAT 2198
||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||||||||
Sbjct 2369 TGATGTAGCAAAAGCATTTTACTACTTTGCTTTATGTGGCGATCATCTCCAAACTCACAT 2428
Query 2199 CTCCAAAGTCTTGTTTCAAAAAGTCTTGTAA 2229
|||||||||||||||||||||||||| ||||
Sbjct 2429 CTCCAAAGTCTTGTTTCAAAAAGTCTAGTAA 2459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110591800635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5