BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352549
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02760.3 | Symbols: | RNI-like superfamily protein | chr4:1... 1718 0.0
AT4G02740.1 | Symbols: | F-box/RNI-like superfamily protein | ... 315 1e-84
> AT4G02760.3 | Symbols: | RNI-like superfamily protein | chr4:1223962-1228070
REVERSE LENGTH=2243
Length=2243
Score = 1718 bits (930), Expect = 0.0
Identities = 1059/1122 (94%), Gaps = 6/1122 (1%)
Strand=Plus/Plus
Query 1 ATGGACGCTCCCAATCCCAAGCGACCTTGCCTTGTCCCTTTGGTTACCTACTCCATAGAA 60
||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||||
Sbjct 214 ATGGACGCTCCCAATCCCAAGCGACCTTGTCTTGTGCCTTTGGGTACCTCCTCCATAGAA 273
Query 61 AACCCTTTTTCCCTCCCTATTGCTCCAGATTTCAACCAAAGCAACATTGATATGACTATC 120
||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 274 AACCCTTGCTCCCTCCCTATTGCTCCAGATTTCAACCAAAGCAACATCGATTTGACTATC 333
Query 121 TCTTCTTTCCTTTCATTGTCCGACTTGCCTTTGTTCTCCTCACCGCTCTCCATAGGATGC 180
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||
Sbjct 334 TCTTCTTTCCTTTCGTTGTCGGACTTGCCTTTGTTCTCCTTACCGCTCTCCATTGGATGC 393
Query 181 TCTTTTGATCGAGTGCTTGATAAAGTTATCCCCTCAGCAGCTGGAACTTCCCGTGATGAA 240
||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 394 TCTTTTGATCGAGTGCTTGATAATGTCATCCCCTCAATAGCTGGAACTTCCCGTGATGAA 453
Query 241 TTTGATCAGGATCGTTTCCTAGATCGTACTCTCCAACTCGCATCGCTTCTTTACAAGTCC 300
|||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 454 TTTGATCAGGATCGTTTCTTGGATCGTACTCTCCAACTCGCATCGCTTCTATACAAGTCC 513
Query 301 ACCAAACGTTGCATAAGGAAACGTGCCACCCTCCAAAATTCCTCATCCTGGCCTCTCCTC 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 514 ACCAAACGTTGCATAAGGAAACGTGCCACCCTCCAAAATTCCACATCCTGGCCTCTCCTC 573
Query 361 CCTGAACTAACCACTAAGGTCTTTTCAATGCTTGATACGAAGTCTCTCATGCAAGCTTCT 420
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 CCTGAACTAACTATTAAGGTCTTTTCAATGCTTGATACGAAGTCTCTCATGCAAGCTTCT 633
Query 421 GCATGTTGCACGATGTTCAACAAGTGTGCCATGGATCGTGTATGTTACTCCCACATCGAC 480
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GCGTGTTGCACAATGTTCAACAAGTGTGCCATGGATCGTGTATGTTACTCCCACATCGAC 693
Query 481 CTGACAACGGCTGCCGAAGTTGTTGATAATGGAGTTGTGTGCGTAATGATCCATCGGGCT 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 694 CTGACAACGGCTGCCGAAGATGTTGATAATGGAGTTGTGTGCGTAATGATCCATCGGGCT 753
Query 541 GGAAAAGAACTCAGATCCCTTAAACTTGGTTCTATTTCTTCCTCAGCTGGATTTACTACA 600
|||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||
Sbjct 754 GGAAAAGAACTCAGATCCCTCAAACTTGGTTCTATTTCTTCCTCAGCTGAACCTACTACA 813
Query 601 TCTTTGCTGACAAGATCCTGTCTTACCCCACTAACTTTTAACCATGGTTTTGCTGGGGGT 660
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 814 TCTTTGCTGACAAGATCCTGTCTTACTCCACTAACTTTTAACCATGGTTTTACTGGGGGT 873
Query 661 CATTTGAGAAGCCTACACCTTTACCATCTCAGAATGATGGATTGCGAGTCCTTATCTCCT 720
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 874 CATTTGAGAAGCCTACACCTTTACCATCTCAGAATGATAGATTGCGGGTCCTTATCTCCT 933
Query 721 GTGTTGTCAGCTTGTTTAAATCTCACTGATTTGAAGATTGTTGGACTTATT-CAAGGAAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 934 GTGTTGTCAGCTTGTTTAAATCTCACTGATTTGAAGATTGTTGGACTTATTTCA-GGAAG 992
Query 780 CAGGTACAATCCACTTGAGCAGTTAGGTTTACTCACGAGAAATTGTCGCTTGTTAGAGCA 839
|||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 993 CAGGGATAATCCACTTGAGCAGTTAGGTTTACTCACGAGAAATTGTCGCTTGATAGAGCA 1052
Query 840 CCTGTTCATAGAGATATATGGTGCAGCAGGCCCTATAACAGATTCAAGCTTGTTAGAGTT 899
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1053 CCTGTTCATAGAGATATATGGTGCAGCAGGCCTTATAACAGATTCAAGCTTGTTAGAGTT 1112
Query 900 TGTGGATAAATGCCCCAACTTAATTTCGCTATCGCTCCTATGTTTTATGCTAAAGGGCGC 959
|| || || ||||||||||||| |||| ||||||||||| ||||| ||||||| | |||
Sbjct 1113 TGCGGCCAATTGCCCCAACTTAAGTTCGATATCGCTCCTAGGTTTTCTGCTAAATGACGC 1172
Query 960 AATATTACAAAAATTAATTAAGGGTTTTCGTCAACTGAAGTACATTAATCTGTCGAAGT- 1018
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||
Sbjct 1173 AATATTACAAAAATTAATTAAGGGTTTTCGTCGACTGAAGCACATTAATCTGTCGA-GTT 1231
Query 1019 CGCCTGAAATTAGTGGTTGCTTTTTCAGGGGTTTGGGACTTTGCTGCAAAGATAGTCCAC 1078
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1232 CGCCTGAAATTAGTGGTTGCTTTTTCAGGGGTTTGGAACTTTGCGGCAAAGATAGTCCAT 1291
Query 1079 TGGAGACTTTGATATTGCGCAATTGCTATACTC-TAGAGGAG 1119
|||||||| |||||||||| | ||||||| || || |||||
Sbjct 1292 TGGAGACTCTGATATTGCGTGACTGCTATA-TCCTAAAGGAG 1332
Score = 355 bits (192), Expect = 6e-97
Identities = 220/234 (94%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 1120 GACGTATCAAACGTCAACGGTTTAGTTTGTGATGGAGGCAATAGAACGTTTGAACCAAGA 1179
||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1396 GACGTATCAAACGTCGACGGTTTAGTATGTGATGGAGGCAATAGAACTTTTGAACCAAGA 1455
Query 1180 TTTCCTATCGAGGAGCTGAAAAAACAAAGATCAGATGTCACATTGGTGGCAATTTTTGAA 1239
||||||||||||||||||||||| ||||||||| |||||||||| |||||||| ||||||
Sbjct 1456 TTTCCTATCGAGGAGCTGAAAAAGCAAAGATCAAATGTCACATTTGTGGCAATCTTTGAA 1515
Query 1240 TCACAATCATCATTGTCATCATCAAGCTCAGGGGAGGTATATTCAGATGGCACCTCTTCT 1299
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 TCACAGTCATCATTGTCATCATCAAGCTCAGGGGAGGTATATTCAGATGGCACCTCTTCG 1575
Query 1300 TGGAGTTCTAATTATAGCAGTGAGGAGGAGGAGCATAACAACGACTTGGACTCT 1353
|||| ||||||||||| ||| | ||||||||||||| |||||||||||||||||
Sbjct 1576 TGGACTTCTAATTATAACAGCGCGGAGGAGGAGCATGACAACGACTTGGACTCT 1629
> AT4G02740.1 | Symbols: | F-box/RNI-like superfamily protein
| chr4:1217591-1220857 REVERSE LENGTH=1628
Length=1628
Score = 315 bits (170), Expect = 1e-84
Identities = 437/561 (78%), Gaps = 38/561 (7%)
Strand=Plus/Plus
Query 227 CTTCCCG-TGATGAATTTGATCAGGATCGTTTCCTAGATCGTACTCTCCAACTCGCATCG 285
||| ||| |||||||| | |||||||||| || | |||||||||||| ||||||| |||
Sbjct 187 CTT-CCGCTGATGAATCCGTTCAGGATCGTCTCGTCGATCGTACTCTCGAACTCGCGTCG 245
Query 286 CTTCTT-TACAAGTCCACCAAACGTTGCATAAGGAAACGTGCCACCCTCCAAAATTCCTC 344
|||||| | | | ||||| | |||||| | | || || || | | || ||||||
Sbjct 246 CTTCTTCT-CGATTCCACTAGGCGTTGCTTCCGTAAGCGAGCTTCTGTTCACAATTCC-A 303
Query 345 A-TCCTGG--CCTCTCCTCCCTGAACTAACCACTAAGGTCTTTTCAATGCTTGATACGAA 401
| |||||| |||| ||| || ||||| |||| |||||||||||| ||||||||||| ||
Sbjct 304 ATTCCTGGTCCCTC-CCT-CCAGAACTTACCATTAAGGTCTTTTCGATGCTTGATACAAA 361
Query 402 GTCTCTCATGCAAGCTTCTGCATGTTGCACGATGTTCAACAAGTGTGCCATGGATCGTGT 461
|||| | |||||||| ||| || ||||| |||||||| || ||||| ||||| ||| |
Sbjct 362 GTCTATGATGCAAGCAGCTGTGTGCTGCACCATGTTCAATAAATGTGCAATGGACCGTTT 421
Query 462 ATGTTACTCCCACATCGACCTGACAACGGCTGCC-GA-AGTTGTTGATAATGGAGTTGTG 519
|||||||||||||||||||||||||||| |||| || | | | |||||| |||||||||
Sbjct 422 ATGTTACTCCCACATCGACCTGACAACGTCTGCTAGATA-T-GCTGATAAAGGAGTTGTG 479
Query 520 TGCGTA--ATGATCCATCGGGCTGGAAAAGAACTCAGATCCCTTAAACTTGGTTC-TATT 576
| | || |||||| |||||||||| ||||||||||||||||| ||||||||| | | ||
Sbjct 480 T-C-TACTATGATCAATCGGGCTGGTAAAGAACTCAGATCCCTGAAACTTGGT-CGTGTT 536
Query 577 TCTTCCT-CAGCTGGATTT-A--CTAC---ATCTTTGCTGA-CAAGATCCTGTCTTACCC 628
||| | ||||||||| | | || | | ||||||| | | |||| |||||| |||
Sbjct 537 G-TTCGTACAGCTGGATCTGATTCTGCTGCACCTTTGCTTAGCG-GATCTTGTCTTTCCC 594
Query 629 CACTAACTTTTAACCATGGTTTTGCTGGGG-GTCATTTGAGAAGCCTACACCTTTACCAT 687
||||| | | ||| ||||||||| || ||| ||| ||||||||||||| |||||| ||
Sbjct 595 CACTAGCATATAATCATGGTTTT-CTTGGGAGTCGCTTGAGAAGCCTACGGCTTTACAAT 653
Query 688 CTCAGAA-TGATGGATTGCGAG-TCCTTAT-CTCCTGTGTTGTCAGCTTGTTTAAATCTC 744
|||||| | || | | | || ||||||| | || |||||||| |||| |||| ||
Sbjct 654 CTCAGACCT-ATAAAATAC-AGGTCCTTATGCGA-TGCGTTGTCAGTTTGTCCAAATATC 710
Query 745 ACTGATTTGAAGATTGTTGGA 765
|||||| ||| |||||| |||
Sbjct 711 ACTGATCTGAGGATTGTGGGA 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66917326485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5