BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352566
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02670.1 | Symbols: AtIDD12, IDD12 | indeterminate(ID)-domai... 1869 0.0
AT1G55110.1 | Symbols: AtIDD7, IDD7 | indeterminate(ID)-domain ... 377 1e-103
> AT4G02670.1 | Symbols: AtIDD12, IDD12 | indeterminate(ID)-domain
12 | chr4:1176190-1178489 REVERSE LENGTH=1209
Length=1209
Score = 1869 bits (1012), Expect = 0.0
Identities = 1150/1216 (95%), Gaps = 11/1216 (1%)
Strand=Plus/Plus
Query 7 ATGTTTTCATCTCATTCCTTGTCCTATAAACTAAGCTCTTTGTCTAGC-GAAGCAAGTGC 65
|||||||| |||||||||||||||||||| |||||||||||||||| | |||||||||||
Sbjct 1 ATGTTTTCTTCTCATTCCTTGTCCTATAAGCTAAGCTCTTTGTCTA-CTGAAGCAAGTGC 59
Query 66 TTCTTCTGGTAACAACACACTCAGTACCATCCAAGAATTCAGTGGCTTTAACAATGTGAT 125
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 60 CTCTTCTGGTAACAACACACTCAGTACCATCCAAGAATTCAGTGGCTTTCACAATGTGAT 119
Query 126 TTCTAGTGTTTGTACACACACAGAGACTCACAAGACTAAGAAAAGGAGAGGCCTTCCTGG 185
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 120 TTCTAGTGTTTGTACACACACAGAGACTCACAAGCCTAAGAAAAAGAGAGGCCTTCCTGG 179
Query 186 AAATCCTGATCCAGATGCAGAGGTGATCGCATTATCACCAAAGACACTTCTTGCAACAAA 245
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAATCCTGATCCAGATGCAGAAGTGATCGCATTATCACCAAAGACACTTCTTGCAACAAA 239
Query 246 CAGATTCGTTTGTGAGATATGCAACAAAGGGTTCCAAAGAGATCAGAATCTACAGCTTCA 305
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 CAGATTCGTTTGTGAGATATGCAACAAAGGGTTTCAAAGAGATCAGAATCTACAGCTTCA 299
Query 306 CAGGAGAGGCCACAATCTTCCATGGAAGCTGAAACAGAAGAACAGCAAAGAACAACAAAA 365
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 CAGGAGAGGCCACAATCTTCCATGGAAGCTGAAACAGAAGAACACCAAAGAACAACAAAA 359
Query 366 GAAGAAAGTTTATGTGTGCCCAGAGACAAACTGTGTTCATCATCATCCATCTAGAGCTCT 425
||||||||| || |||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 360 GAAGAAAGTCTACGTGTGCCCAGAGACAAACTGTGCTCATCACCATCCATCTAGAGCTCT 419
Query 426 TGGTGATCTCACAGGGATCAAGAAACACTTTTGCAGGAAACATGGAGAGAAGAAATGGAA 485
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGGGGATCTCACAGGGATCAAGAAACACTTTTGCAGGAAACATGGAGAGAAGAAATGGAA 479
Query 486 ATGTGAAAAGTGTTCAAAGTTCTATGCTGTTCAATCTGATTGGAAAGCTCATACCAAGAT 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATGTGAAAAGTGTTCAAAGTTCTATGCTGTTCAATCTGATTGGAAAGCTCATACCAAGAT 539
Query 546 CTGTGGTACAAGAGATTATAGATGTGACTGTGGCACTCTTTTCTCGAGGAAAGACAGTTT 605
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 540 CTGTGGTACTAGAGATTATAGATGTGACTGCGGCACTCTTTTCTCGAGGAAAGACACTTT 599
Query 606 CATAACGCATAGAGCGTTTTGTGATGCATTAGCAGAAGAAAGTGCAAGAATCCACTCAAC 665
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 CATAACGCATAGAGCGTTTTGTGATGCATTAGCAGAAGAAAGTGCAAGACTCCACTCAAC 659
Query 666 TTCTTCCTCCAATCTCACAAACCCTAACCCTATTTTCCACGACCATCATCACTTTATGGT 725
|||||||||||||||||||||||||||||||| |||||| | ||||||| |||||| |
Sbjct 660 TTCTTCCTCCAATCTCACAAACCCTAACCCTAATTTCCAAGGCCATCAT---TTTATGTT 716
Query 726 CAACAAATCTTCTTCCTTACTCTTCACGTCATCACCTCTTTACAACGAACCATCACATTC 785
||| |||||||| ||||| |||||||||||||||||||||| || ||||||||||| |||
Sbjct 717 CAATAAATCTTCCTCCTTGCTCTTCACGTCATCACCTCTTTTCATCGAACCATCACTTTC 776
Query 786 CACGGCCGCTCTTTCGACGTCTTCCA-CGGCAGCTCTTTCCGCGACGGCTCTCCTCCAAA 844
||| ||||||||||| ||| || ||| ||||||||||||||||||||||||| |||||||
Sbjct 777 CACCGCCGCTCTTTCAACGCCT-CCAACGGCAGCTCTTTCCGCGACGGCTCTTCTCCAAA 835
Query 845 AGGCCACCGCTCTCAGCTCCTCCACATTCGGCGGCGGAGGACAGACTCGATCAATTGGTC 904
|||||||| ||||||||||| | || |||||||||||||||||||||||||| |||||||
Sbjct 836 AGGCCACCTCTCTCAGCTCCACTACTTTCGGCGGCGGAGGACAGACTCGATCCATTGGTC 895
Query 905 ATCACCGACATTTAACGA-CGGTCAACGAGCTTCTTGGTGTTGATCGTGTCATGGTGACG 963
||||||||||||| |||| || |||||||| ||||||||||||| || |||||| |||||
Sbjct 896 ATCACCGACATTTGACGAACG-TCAACGAGTTTCTTGGTGTTGACCGAGTCATGATGACG 954
Query 964 TCATCTTCTTCGTCTGAGTACGACCAGCTAGTTGTTGATGGGTTAACATCCACGTGGCAG 1023
||| ||||||||||||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 955 TCAGCTTCTTCGTCTGAGTACGACCAGTTAGTTGTTGATGGGTTTACGTCCACGTGGCAG 1014
Query 1024 AAAGCTGACCGTTTGACCAGAGACTTTCTTGGACTCACGGGTCATGGAATG-CACGTTAG 1082
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1015 AAAGCTGACCGTTTGACCAGAGACTTTCTTGGACTCACGGGTCATGGGG-GACACGTTAG 1073
Query 1083 CGTGAGACCCGGTGATATGCTAGAGTACGCAGGTGGAGTGGCGTTTCCTATGTCGGCGTA 1142
||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1074 CGTCAGACCTGGGGATATGCTAGAGTACGCGGGTGGAGTGGCGTTTCCTATGTCGGCGTA 1133
Query 1143 CGATACCGAATCTCATCATCACTCGTTTCAGAAGGCTTACGATCATCTGGGATTCTCAGG 1202
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CGATACCGAATCTCATGATCACTCGTTTCAGAAGGCTTACGATCATCTGGGATTCTCAGG 1193
Query 1203 GCCCCATCGTATCTAA 1218
| |||||||||| |||
Sbjct 1194 GGCCCATCGTATGTAA 1209
> AT1G55110.1 | Symbols: AtIDD7, IDD7 | indeterminate(ID)-domain
7 | chr1:20560284-20563171 REVERSE LENGTH=1580
Length=1580
Score = 377 bits (204), Expect = 1e-103
Identities = 389/478 (81%), Gaps = 14/478 (3%)
Strand=Plus/Plus
Query 184 GGAAATCCTGATCCAGATGCAGAGGTGATCGCATTATCACCAAAGACACTTCTTGCAACA 243
|||||||| || ||||| ||||| ||||| || ||||||||||||||||| | || |||
Sbjct 298 GGAAATCCAGACCCAGAAGCAGAAGTGATGGCCTTATCACCAAAGACACTAATGGCGACA 357
Query 244 AACAGATTCGTTTGTGAGATATGCAACAAAGGGTTCCAAAGAGATCAGAATC-TACAGCT 302
||||||||| | |||||| | ||||||||||| || |||||||| || || | | || ||
Sbjct 358 AACAGATTCATATGTGAGGTCTGCAACAAAGGTTTTCAAAGAGACCA-AAACTTGCAACT 416
Query 303 TCACAGGAGAGGCCACAATCTTCCATGGAAGCTGAAACAGAAGAAC-AGCAAAGAACAAC 361
||||| |||||| || ||||| || |||||||| ||||| |||| | | ||||||
Sbjct 417 TCACAAGAGAGGACATAATCTACCGTGGAAGCTTAAACA-AAGATCAAACAAAGATGTGG 475
Query 362 AAAAGAAGAAAGTTTATGTGTGCCCAGAGACAAACTGTGTTCATCATCATCCATCTAGAG 421
| ||||||||||||||| || |||||| || |||||| ||||| |||||||| ||||
Sbjct 476 TTAGGAAGAAAGTTTATGTTTGTCCAGAGCCAGGCTGTGTCCATCACCATCCATCGAGAG 535
Query 422 CTCTTGGTGATC-TCACAGGGATCAAGAAACACTTT-TGCAGGAAACATGGAGAGAAGAA 479
|||||||||| | | || || |||||||| || ||| | ||| |||||||| ||||||||
Sbjct 536 CTCTTGGTGA-CTTAACCGGAATCAAGAAGCA-TTTCTTCAGAAAACATGGCGAGAAGAA 593
Query 480 ATGGAAATGTGAAAAGTGTTCAAAGTTCTATGCTGTTCAATCTGATTGGAAAGCTCATAC 539
||||||||||||||||||||| ||| ||||| || ||||| |||||||| |||||| |
Sbjct 594 ATGGAAATGTGAAAAGTGTTCCAAGAAATATGCGGTGCAATCAGATTGGAAGGCTCATGC 653
Query 540 CAAGATCT-GTGGTAC-AAGAGATTATAGATGTGACTGTGGCACTCT-TTTCTCGAGGAA 596
|||| || |||| || || ||| || | ||| |||||||| ||||| ||| || ||||
Sbjct 654 TAAGA-CTTGTGGCACTAA-AGAATACAAATGCGACTGTGGAACTCTCTTT-TCTAGGAG 710
Query 597 AGACAGTTTCATAACGCATAGAGCGTTTTGTGATGCATTAGCAGAAGAAAGTGCAAGA 654
|| ||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 711 GGATAGTTTCATAACTCATAGAGCATTTTGCGATGCATTAGCAGAAGAGAGTGCAAGA 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5