BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg352566 Length=1218 Score E Sequences producing significant alignments: (Bits) Value AT4G02670.1 | Symbols: AtIDD12, IDD12 | indeterminate(ID)-domai... 1869 0.0 AT1G55110.1 | Symbols: AtIDD7, IDD7 | indeterminate(ID)-domain ... 377 1e-103 > AT4G02670.1 | Symbols: AtIDD12, IDD12 | indeterminate(ID)-domain 12 | chr4:1176190-1178489 REVERSE LENGTH=1209 Length=1209 Score = 1869 bits (1012), Expect = 0.0 Identities = 1150/1216 (95%), Gaps = 11/1216 (1%) Strand=Plus/Plus Query 7 ATGTTTTCATCTCATTCCTTGTCCTATAAACTAAGCTCTTTGTCTAGC-GAAGCAAGTGC 65 |||||||| |||||||||||||||||||| |||||||||||||||| | ||||||||||| Sbjct 1 ATGTTTTCTTCTCATTCCTTGTCCTATAAGCTAAGCTCTTTGTCTA-CTGAAGCAAGTGC 59 Query 66 TTCTTCTGGTAACAACACACTCAGTACCATCCAAGAATTCAGTGGCTTTAACAATGTGAT 125 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 60 CTCTTCTGGTAACAACACACTCAGTACCATCCAAGAATTCAGTGGCTTTCACAATGTGAT 119 Query 126 TTCTAGTGTTTGTACACACACAGAGACTCACAAGACTAAGAAAAGGAGAGGCCTTCCTGG 185 |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 120 TTCTAGTGTTTGTACACACACAGAGACTCACAAGCCTAAGAAAAAGAGAGGCCTTCCTGG 179 Query 186 AAATCCTGATCCAGATGCAGAGGTGATCGCATTATCACCAAAGACACTTCTTGCAACAAA 245 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 180 AAATCCTGATCCAGATGCAGAAGTGATCGCATTATCACCAAAGACACTTCTTGCAACAAA 239 Query 246 CAGATTCGTTTGTGAGATATGCAACAAAGGGTTCCAAAGAGATCAGAATCTACAGCTTCA 305 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 240 CAGATTCGTTTGTGAGATATGCAACAAAGGGTTTCAAAGAGATCAGAATCTACAGCTTCA 299 Query 306 CAGGAGAGGCCACAATCTTCCATGGAAGCTGAAACAGAAGAACAGCAAAGAACAACAAAA 365 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 300 CAGGAGAGGCCACAATCTTCCATGGAAGCTGAAACAGAAGAACACCAAAGAACAACAAAA 359 Query 366 GAAGAAAGTTTATGTGTGCCCAGAGACAAACTGTGTTCATCATCATCCATCTAGAGCTCT 425 ||||||||| || |||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 360 GAAGAAAGTCTACGTGTGCCCAGAGACAAACTGTGCTCATCACCATCCATCTAGAGCTCT 419 Query 426 TGGTGATCTCACAGGGATCAAGAAACACTTTTGCAGGAAACATGGAGAGAAGAAATGGAA 485 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TGGGGATCTCACAGGGATCAAGAAACACTTTTGCAGGAAACATGGAGAGAAGAAATGGAA 479 Query 486 ATGTGAAAAGTGTTCAAAGTTCTATGCTGTTCAATCTGATTGGAAAGCTCATACCAAGAT 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 ATGTGAAAAGTGTTCAAAGTTCTATGCTGTTCAATCTGATTGGAAAGCTCATACCAAGAT 539 Query 546 CTGTGGTACAAGAGATTATAGATGTGACTGTGGCACTCTTTTCTCGAGGAAAGACAGTTT 605 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 540 CTGTGGTACTAGAGATTATAGATGTGACTGCGGCACTCTTTTCTCGAGGAAAGACACTTT 599 Query 606 CATAACGCATAGAGCGTTTTGTGATGCATTAGCAGAAGAAAGTGCAAGAATCCACTCAAC 665 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 600 CATAACGCATAGAGCGTTTTGTGATGCATTAGCAGAAGAAAGTGCAAGACTCCACTCAAC 659 Query 666 TTCTTCCTCCAATCTCACAAACCCTAACCCTATTTTCCACGACCATCATCACTTTATGGT 725 |||||||||||||||||||||||||||||||| |||||| | ||||||| |||||| | Sbjct 660 TTCTTCCTCCAATCTCACAAACCCTAACCCTAATTTCCAAGGCCATCAT---TTTATGTT 716 Query 726 CAACAAATCTTCTTCCTTACTCTTCACGTCATCACCTCTTTACAACGAACCATCACATTC 785 ||| |||||||| ||||| |||||||||||||||||||||| || ||||||||||| ||| Sbjct 717 CAATAAATCTTCCTCCTTGCTCTTCACGTCATCACCTCTTTTCATCGAACCATCACTTTC 776 Query 786 CACGGCCGCTCTTTCGACGTCTTCCA-CGGCAGCTCTTTCCGCGACGGCTCTCCTCCAAA 844 ||| ||||||||||| ||| || ||| ||||||||||||||||||||||||| ||||||| Sbjct 777 CACCGCCGCTCTTTCAACGCCT-CCAACGGCAGCTCTTTCCGCGACGGCTCTTCTCCAAA 835 Query 845 AGGCCACCGCTCTCAGCTCCTCCACATTCGGCGGCGGAGGACAGACTCGATCAATTGGTC 904 |||||||| ||||||||||| | || |||||||||||||||||||||||||| ||||||| Sbjct 836 AGGCCACCTCTCTCAGCTCCACTACTTTCGGCGGCGGAGGACAGACTCGATCCATTGGTC 895 Query 905 ATCACCGACATTTAACGA-CGGTCAACGAGCTTCTTGGTGTTGATCGTGTCATGGTGACG 963 ||||||||||||| |||| || |||||||| ||||||||||||| || |||||| ||||| Sbjct 896 ATCACCGACATTTGACGAACG-TCAACGAGTTTCTTGGTGTTGACCGAGTCATGATGACG 954 Query 964 TCATCTTCTTCGTCTGAGTACGACCAGCTAGTTGTTGATGGGTTAACATCCACGTGGCAG 1023 ||| ||||||||||||||||||||||| |||||||||||||||| || |||||||||||| Sbjct 955 TCAGCTTCTTCGTCTGAGTACGACCAGTTAGTTGTTGATGGGTTTACGTCCACGTGGCAG 1014 Query 1024 AAAGCTGACCGTTTGACCAGAGACTTTCTTGGACTCACGGGTCATGGAATG-CACGTTAG 1082 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1015 AAAGCTGACCGTTTGACCAGAGACTTTCTTGGACTCACGGGTCATGGGG-GACACGTTAG 1073 Query 1083 CGTGAGACCCGGTGATATGCTAGAGTACGCAGGTGGAGTGGCGTTTCCTATGTCGGCGTA 1142 ||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1074 CGTCAGACCTGGGGATATGCTAGAGTACGCGGGTGGAGTGGCGTTTCCTATGTCGGCGTA 1133 Query 1143 CGATACCGAATCTCATCATCACTCGTTTCAGAAGGCTTACGATCATCTGGGATTCTCAGG 1202 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1134 CGATACCGAATCTCATGATCACTCGTTTCAGAAGGCTTACGATCATCTGGGATTCTCAGG 1193 Query 1203 GCCCCATCGTATCTAA 1218 | |||||||||| ||| Sbjct 1194 GGCCCATCGTATGTAA 1209 > AT1G55110.1 | Symbols: AtIDD7, IDD7 | indeterminate(ID)-domain 7 | chr1:20560284-20563171 REVERSE LENGTH=1580 Length=1580 Score = 377 bits (204), Expect = 1e-103 Identities = 389/478 (81%), Gaps = 14/478 (3%) Strand=Plus/Plus Query 184 GGAAATCCTGATCCAGATGCAGAGGTGATCGCATTATCACCAAAGACACTTCTTGCAACA 243 |||||||| || ||||| ||||| ||||| || ||||||||||||||||| | || ||| Sbjct 298 GGAAATCCAGACCCAGAAGCAGAAGTGATGGCCTTATCACCAAAGACACTAATGGCGACA 357 Query 244 AACAGATTCGTTTGTGAGATATGCAACAAAGGGTTCCAAAGAGATCAGAATC-TACAGCT 302 ||||||||| | |||||| | ||||||||||| || |||||||| || || | | || || Sbjct 358 AACAGATTCATATGTGAGGTCTGCAACAAAGGTTTTCAAAGAGACCA-AAACTTGCAACT 416 Query 303 TCACAGGAGAGGCCACAATCTTCCATGGAAGCTGAAACAGAAGAAC-AGCAAAGAACAAC 361 ||||| |||||| || ||||| || |||||||| ||||| |||| | | |||||| Sbjct 417 TCACAAGAGAGGACATAATCTACCGTGGAAGCTTAAACA-AAGATCAAACAAAGATGTGG 475 Query 362 AAAAGAAGAAAGTTTATGTGTGCCCAGAGACAAACTGTGTTCATCATCATCCATCTAGAG 421 | ||||||||||||||| || |||||| || |||||| ||||| |||||||| |||| Sbjct 476 TTAGGAAGAAAGTTTATGTTTGTCCAGAGCCAGGCTGTGTCCATCACCATCCATCGAGAG 535 Query 422 CTCTTGGTGATC-TCACAGGGATCAAGAAACACTTT-TGCAGGAAACATGGAGAGAAGAA 479 |||||||||| | | || || |||||||| || ||| | ||| |||||||| |||||||| Sbjct 536 CTCTTGGTGA-CTTAACCGGAATCAAGAAGCA-TTTCTTCAGAAAACATGGCGAGAAGAA 593 Query 480 ATGGAAATGTGAAAAGTGTTCAAAGTTCTATGCTGTTCAATCTGATTGGAAAGCTCATAC 539 ||||||||||||||||||||| ||| ||||| || ||||| |||||||| |||||| | Sbjct 594 ATGGAAATGTGAAAAGTGTTCCAAGAAATATGCGGTGCAATCAGATTGGAAGGCTCATGC 653 Query 540 CAAGATCT-GTGGTAC-AAGAGATTATAGATGTGACTGTGGCACTCT-TTTCTCGAGGAA 596 |||| || |||| || || ||| || | ||| |||||||| ||||| ||| || |||| Sbjct 654 TAAGA-CTTGTGGCACTAA-AGAATACAAATGCGACTGTGGAACTCTCTTT-TCTAGGAG 710 Query 597 AGACAGTTTCATAACGCATAGAGCGTTTTGTGATGCATTAGCAGAAGAAAGTGCAAGA 654 || ||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||| Sbjct 711 GGATAGTTTCATAACTCATAGAGCATTTTGCGATGCATTAGCAGAAGAGAGTGCAAGA 768 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59839049640 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5