BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg352604

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G04140.2 | Symbols: GLU1, GLS1, GLUS, FD-GOGAT | glutamate s...   327    3e-89


> AT5G04140.2 | Symbols: GLU1, GLS1, GLUS, FD-GOGAT | glutamate 
synthase 1 | chr5:1130031-1138438 FORWARD LENGTH=5199
Length=5199

 Score =  327 bits (177),  Expect = 3e-89
 Identities = 189/195 (97%), Gaps = 0/195 (0%)
 Strand=Plus/Plus

Query  109   CTTATCGAAAATGGACTCAGAGAAAGAGTCATTTTAAGAGTTGATGGAGGCTTAAAGAGT  168
             ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct  3649  CTTATCGCAAATGGACTAAGAGAAAGAGTCATTTTAAGAGTCGATGGAGGCTTAAAGAGT  3708

Query  169   GGTGTTGATGTTCTAATGGCTGCAGCTATGGGTGCTGATGAATACGGATTTGGTTCCTTG  228
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  3709  GGTGTTGATGTTCTAATGGCTGCAGCTATGGGTGCTGATGAATACGGATTCGGTTCCTTG  3768

Query  229   GCAATGATTGCTACTGGTTGTCTTATGGCTCGTATTTGCCACACTAATAATTGTCCAGTG  288
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct  3769  GCAATGATTGCTACTGGTTGTGTTATGGCTCGTATTTGCCACACTAATAATTGCCCAGTG  3828

Query  289   GGTGTAGCAAGTCAG  303
             |||||||||||||||
Sbjct  3829  GGTGTAGCAAGTCAG  3843



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14326308465


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5