BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352687
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01540.1 | Symbols: ANAC068, NTM1 | NAC with transmembrane m... 625 5e-178
AT4G01520.1 | Symbols: anac067, NAC067 | NAC domain containing ... 431 1e-119
> AT4G01540.1 | Symbols: ANAC068, NTM1 | NAC with transmembrane
motif1 | chr4:670483-672789 REVERSE LENGTH=1582
Length=1582
Score = 625 bits (338), Expect = 5e-178
Identities = 536/626 (86%), Gaps = 35/626 (6%)
Strand=Plus/Plus
Query 462 AGTAAAGTATAAGGGTGAAGCTGCAGACATTTCATATGAGCCAAG----TC----G-CTC 512
||||||||||||||||||||||||||| ||||||||||||||||| || | ||
Sbjct 610 AGTAAAGTATAAGGGTGAAGCTGCAGAAATTTCATATGAGCCAAGTCCCTCTTTGGTATC 669
Query 513 CGATTCGAATACTACCAGAGCGATTAACAGAGCGGCTGAGCCTGAGCTTCAGGTTGAGCA 572
||||||| |||| || |||||||| | ||| | || ||||||||||||||||||||
Sbjct 670 CGATTCGCATACCGTCATAGCGATTACCGGAGAACCGGAACCTGAGCTTCAGGTTGAGCA 729
Query 573 GCCAGGTAGAGAAAATTTCTTGGGTATGTCTTTAGATGATTTG---GAACAAGAGGATCC 629
|||||||| ||||||| |||||||||||||| ||||||||||| |||| | | || ||
Sbjct 730 GCCAGGTAAAGAAAATCTCTTGGGTATGTCTGTAGATGATTTGATAGAACCA-ATGAACC 788
Query 630 AAAAACTTGCTTGCAGCCACAAGGTCCTCACTTAGCCT-TGAATGATGATGAGTTTATCC 688
|| || | | ||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 789 AACAA---G--AGGAGCCACAAGGTCCTCACTTAG-CTCCGAATGATGATGAGTTTATAC 842
Query 689 GTGGATTGAGGCATGTTGATCGA-GAACAAGTTGAATATTTGTTCGCCAATGAAGAAAAC 747
||||||||||||||||||||||| | || |||||||||||||| |||||||||||||||
Sbjct 843 GTGGATTGAGGCATGTTGATCGAGGGAC-GGTTGAATATTTGTTTGCCAATGAAGAAAAC 901
Query 748 ATTGATGGTTTGTCTATGAATGACTTGAGAATCCCAATGATCGTCCAACAAGAGGATCTC 807
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 ATGGATGGTTTGTCTATGAATGACTTGAGAATCCCAATGATCGTCCAACAAGAGGATCTC 961
Query 808 TCTGAGTGGGATGGATTTAATGCAGACACGTTTTTCAGCGACAACAACAATAACAACAAC 867
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct 962 TCTGAGTGGGAGGGATTTAACGCAGACACCTTTTTCAGCGACAACAACAATAACTATAAC 1021
Query 868 CTTAACGTGCATCA--A-CTAACGCGTTACGGAGATGATTATCGGAATGCAGGTTATAAC 924
|||||||||||||| | ||||||| |||||| |||| ||| ||||||| || | |
Sbjct 1022 CTTAACGTGCATCATCAACTAACGCCTTACGGCGATGGCTATTTGAATGCAT-TT-T--C 1077
Query 925 GGAGGGAATTTTGAAGGCG--TGCATCCCTATCAAGAATTAATAATGCAAGAGAACCGCA 982
|| | | | ||||| | | | |||| |||| |||||| | ||||||||||||||||
Sbjct 1078 GG-GTTA-TAACGAAGG-GAATCC-TCCCGATCACGAATTAGTGATGCAAGAGAACCGCA 1133
Query 983 ACGATCACATGCCAAAGAAACCTTTGACAGGGACCATTGATTATAGCAGCGATAGTAGCA 1042
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1134 ACGATCACATGCCAAGGAAACCTGTGACAGGGACCATTGATTATAGCAGCGATAGTGGCA 1193
Query 1043 GTGATGCTGGATCGATATCTACAACG 1068
||||||||||||| ||||||||||||
Sbjct 1194 GTGATGCTGGATCCATATCTACAACG 1219
> AT4G01520.1 | Symbols: anac067, NAC067 | NAC domain containing
protein 67 | chr4:656407-659178 REVERSE LENGTH=909
Length=909
Score = 431 bits (233), Expect = 1e-119
Identities = 383/450 (85%), Gaps = 31/450 (7%)
Strand=Plus/Plus
Query 462 AGTAAAGTATAAGGGTGAAGCTGCAGACATTTCATATGAGCCAAG----TC----G-CTC 512
||||||||||||||||||||||||||| ||||||||||||||||| || | ||
Sbjct 450 AGTAAAGTATAAGGGTGAAGCTGCAGAAATTTCATATGAGCCAAGTCCCTCTTTGGTATC 509
Query 513 CGATTCGAATACTACCAGAGCGATTAACAGAGCGGCTGAGCCTGAGCTTCAGGTTGAGCA 572
||||||| |||| || |||||||||| ||| | || ||||||||||||||||||||
Sbjct 510 CGATTCGCATACCGTCATAGCGATTAACGGAGAACCGGAACCTGAGCTTCAGGTTGAGCA 569
Query 573 GCCAGGTAGAGAAAATTTCTTGGGTATGTCTTTAGATGATTTG---GAACAAGAGGATCC 629
|||||||| ||||||| |||||||||||||| ||||||||||| |||| | | || ||
Sbjct 570 GCCAGGTAAAGAAAATCTCTTGGGTATGTCTGTAGATGATTTGATAGAACCA-ATGAACC 628
Query 630 AAAAACTTGCTTGCAGCCACAAGGTCCTCACTTAGC-CTTGAATGATGATGAGTTTATCC 688
|| || | | |||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 629 AACAAGA-G---G-AGCCACAAGGTCCTCACTTAGCTCC-GAATGATGATGAGTTTATAC 682
Query 689 GTGGATTGAGGCATGTTGATCGAGAACAAGTTGAATATTTGTTCGCCAATGAAGAAAACA 748
|||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 683 GTGGATTGAGACATGTTGATCGAGAGCCGGTTGAATATTTGTTTGCCAATGAAGAAAACA 742
Query 749 TTGATGGTTTGTCTAT---GAATGACTTGAGAATCCCAATGATCGTCCAACAAGAGGATC 805
| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 743 TGGATGGTTTGTCTATTATGAATGACTTGACAATCCCAATGATCGCCCAACAAGAGGATC 802
Query 806 TC-T-CT----GAGTGGGATGGATTTAAT-GCAGACACGTTTTTCAGCGACAACAACAAT 858
|| | || |||||||| ||||||| | |||| ||| |||||||||||||||||||||
Sbjct 803 TCATTCTCTCTGAGTGGGAGGGATTTA-TCGCAGCCACCTTTTTCAGCGACAACAACAAT 861
Query 859 AACAACAACCTTAACGTGCATCAACTAACG 888
||||| ||||||||||||||||||||||||
Sbjct 862 AACAATAACCTTAACGTGCATCAACTAACG 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5