BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352740
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00910.1 | Symbols: | Aluminium activated malate transporte... 2322 0.0
> AT4G00910.1 | Symbols: | Aluminium activated malate transporter
family protein | chr4:389370-391287 REVERSE LENGTH=1494
Length=1494
Score = 2322 bits (1257), Expect = 0.0
Identities = 1422/1502 (95%), Gaps = 10/1502 (1%)
Strand=Plus/Plus
Query 1 ATGGCATCACAAGAAGCTGGGAAGCTAGAGTGGAGGATAAGTGTAGACAATGGGACAACA 60
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAACACAAGAAGCAGGGAAGCTAGAGTGGAGGATAAGTGTAGACAATGGGACAACA 60
Query 61 GAGAGATTGGTTCCTAGAGCGGGACTAAGTAAAAGGATCTTTCTTTGGCTAAAGGATTTG 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGAGATTGGTTCCTAGATCGGGACTAAGTAAAAGGATCTTTCTTTGGCTAAAGGATTTG 120
Query 121 GTAATGAAGGTGATCGTGGAGCGAATGGC-AGAGTTTATGATGAAAGCTTGGAGGATTGG 179
||||||||||||||| ||||||| | || | ||||||||| ||||||||||||||||||
Sbjct 121 GTAATGAAGGTGATCATGGAGCGGGTAGCTA-AGTTTATGAGGAAAGCTTGGAGGATTGG 179
Query 180 GGCAGATGATCCGGCCAAAGTGGTACATTGTCTTAAAGTAGGACTTGCACTTTCATTAGT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGCAGATGATCCGGCCAAAGTGGTACATTGTCTTAAAGTAGGACTTGCACTTTCATTAGT 239
Query 240 CTCAATCTTTTATTACATGAGACCTTTGTATGATGGTGTTGGAGGAAATGCTATGTGGGC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTCAATCTTTTATTACATGAGACCTTTGTATGATGGTGTTGGAGGAAATGCTATGTGGGC 299
Query 300 TATCATGACTGTTGTCGTCGTCTTCGAGTCCAATGTTGGAGCAACATTCTGCAAATGTGT 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TATCATGACTGTTGTGGTCGTCTTCGAGTCCAATGTTGGAGCAACATTCTGCAAATGTGT 359
Query 360 AAACAGAGTTGTGGCAACTATATTAGCTGGATCACTAGGCATTGCTGTTCATTGGGTCGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAACAGAGTTGTGGCAACTATATTAGCTGGATCACTAGGCATTGCTGTTCATTGGGTCGC 419
Query 420 CACTCAATCAGGAAAAGCTGAGGTTTTTGTGATTGGATGCTCTGTTTTTCTTTTTGCTTT 479
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 420 CACACAATCAGGAAAAGCTGAGGTTTTTGTGATTGGATGCTCTGTTTTTCTCTTTGCCTT 479
Query 480 CGCAGCTACTTACTCGCGGTTTGTGCCATCATTCAAAGCCAGATTCGACTATGGAGCAAT 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 CGCAGCTACTTACTCGCGGTTTGTGCCGTCATTCAAAGCCAGATTCGACTATGGAGCAAT 539
Query 540 GATCTTTATCCTCACATTTAGCCTTGTCTCAGTAGGCGGTTACCGAGTTGATAAGCTGGT 599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 540 GATCTTTATCCTCACATTTAGCCTTGTCTCAGTAGGCGGTTACCGAGTAGATAAGCTTGT 599
Query 600 GGAATTGGCTCAGCAAAGAGTATCAACTATTGCAATTGGAACATCAATCTGCATTATCAT 659
||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 600 TGAATTGGCTCAGCAAAGAGTATCAACTATTGCAATAGGAACATCTATTTGCATTATCAT 659
Query 660 TACTGTCTTCTTCTGTCCCATCTGGGCAGGATCTCAGCTTCACCGTCTTATCGAACGTAA 719
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 660 TACTGTCTTCTTCTGTCCGATTTGGGCAGGATCTCAGCTTCACCGTCTTATTGAACGTAA 719
Query 720 CCTCGAAAAACTTGCCGATTCACTAGACGGCTGTGTAGCAGAGTACTTCAAGGAGAACGA 779
||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 720 CCTCGAAAAACTTGCTGATTCGTTAGACGGCTGTGTAGCAGAGTACTTTAAGGAGAACGA 779
Query 780 AGTCTCGACGAATCGAAATGAAGATGAAGACACTAGCATGAAATTGCAAGGATTCAAATG 839
|||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 780 AGTCTCAACGAATCGAAATGAAGATGAAAACACTAACATGAAATTGCAAGGATTCAAATG 839
Query 840 TGTGCTAAACTCTAAAGGAACAGAGGAAGCCATGCCGCTTATTCACTTTGCGGGGTTTTC 899
||| || |||||||| |||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 840 TGTACTCAACTCTAAGGGAACAGAGGAAGCCATGCCGCTTATTCGGTTTTCGGGTTTTTC 899
Query 900 TTTAATCTCTCAGGCGAATCTAGCCAGATGGGAACCTGCACATGGAAGCTTTAACTTCCG 959
||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 900 TTT---CTCTCAGGCGAATCTAGCGAGATGGGAACCTGCACATGGAAGCTTTAACTTTCG 956
Query 960 ACATCCTTGGAAGTTATACGTAAAGATAGGTGCTGCTATGCGCAGATGTGCTTATTGTCT 1019
||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 957 GCATCCATGGAAGCTATACGTAAAGATAGGGGCTGCTATGCGCAGATGTGCTTATTGCCT 1016
Query 1020 TGAGAATCTCAGTATCTGCGTTAGCTATGAAACAGAGACACCAGACCAGGTCAAGAAGCA 1079
||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||| ||
Sbjct 1017 TGAGAATCTCAGTATCTGCATCAACTATGAAACAGAGGCACCAGACCAGGTCAAGAACCA 1076
Query 1080 TTTTGGAGAAGCTTGTATGAAATTGAGCTCAGCTTCTTCAAAAATCTTAAGAGAATTAAT 1139
||| || || || ||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1077 TTTCGGGGAGGCATGTATGAAACTGAGCTCAGCTTCTTCAAAAATCCTAAGAGAATTAGC 1136
Query 1140 GGAAATGATGAAGAACACGAGAAAATCATCGAAGATGGATTTCCTGGTGTTTGATATGAA 1199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GGATATGATGAAGAACACGAGAAAATCATCGAAGATGGATTTCCTGGTGTTTGATATGAA 1196
Query 1200 CTCTGCAGTACAAGAGCTTCAAGAAACCTTAAAAACTGTTCCAATTGAAACAAAGAAGAA 1259
||||||||||||||||||||||||||| ||||||| ||||||||||||||| || |||
Sbjct 1197 CTCTGCAGTACAAGAGCTTCAAGAAACTTTAAAAAATGTTCCAATTGAAACCAATAAG-- 1254
Query 1260 GCCTGAAGAAGTTCCATCTGAAGAGGAGAACAAAGTAGACAATGAAGAGAGAAACACGTT 1319
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1255 -CCTGAAGAAGTTCCATCTGAAGAGGAGAACAAAGTAGACAGCGAAGAGAGAACCACGTC 1313
Query 1320 GATGAGCCTGCATGAAGTCCTTCCAGTTGCCACTTTGGTTTCGTTGTTAATCGAAAACGC 1379
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CATGAGCCTACATGAAGTCCTTCCAGTTGCCACTTTGGTTTCGTTGTTAATCGAAAACGC 1373
Query 1380 AGCTAGAATTCAAACAGCCGTTGAAGCAGTCGATGAACTGGCAAATCTTGCAGACTTT-G 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1374 AGCTAGAATTCAAACAGCCGTTGAAGCAGTCGATGAACTGGCAAATCTTGCAGA-TTTCG 1432
Query 1439 AACAAGATTCAAAAAAGAAAACCGGAGACAACAACACTAAACAACCACCACGAAGCTCCT 1498
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1433 AACAAGATTCGAAAAAGAAAACCGGAGACAACAACACTAAACAACCACCACTAAGTTCCT 1492
Query 1499 AA 1500
||
Sbjct 1493 AA 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73995603330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5