BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352812
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73440.1 | Symbols: | calmodulin-related | chr1:27611363-27... 438 3e-122
> AT1G73440.1 | Symbols: | calmodulin-related | chr1:27611363-27612815
FORWARD LENGTH=1453
Length=1453
Score = 438 bits (237), Expect = 3e-122
Identities = 275/293 (94%), Gaps = 3/293 (1%)
Strand=Plus/Plus
Query 452 GAAACGATAAAGAGGCTGCAACTTTGAAGAAGAAGAAAACACCGGATTTGATGAGCAAGA 511
||| |||||||||||||||||| | | ||||||||||| |||||| |||||||||||||
Sbjct 531 GAAGCGATAAAGAGGCTGCAAC--T-ATGAAGAAGAAAAGACCGGAATTGATGAGCAAGA 587
Query 512 TGCAGATGACACAGGATGAATTGGTCATATACTTCTGTCTGTTTGATGAAGCTGGAAAAG 571
||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||
Sbjct 588 CGCAGATGACACAGGATGAATTGGTCATGTACTTCTGTCAGTTTGATGAAGGTGGAAAAG 647
Query 572 GATTCATTACTCTGAGAGATGTGGCGAAAATGGCGACGGTGCATGACTTCACATGGACAC 631
| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 648 GGTTCATTACTCTGAGAGATGTGGCGAAAATGGCAACTGTGCATGACTTCACATGGACAG 707
Query 632 AAGAGGAATTACAAGACATGATTCGTTGCTTTGACATGGACAAGGACGGAAAGCTAAGCT 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 AAGAGGAATTACAAGACATGATTCGTTGCTTTGACATGGACAAGGACGGAAAGCTAAGCT 767
Query 692 TGGATGAGTTCAGGAAGATTGTTTCGCGATGTCGCATGTTGAAAGAATCTTGA 744
|||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 768 TGGATGAGTTCAGGAAGATTGTGTCGCGATGTCGCATGTTGAAAGGTTCTTGA 820
Score = 337 bits (182), Expect = 1e-91
Identities = 360/437 (82%), Gaps = 48/437 (11%)
Strand=Plus/Plus
Query 23 GAGAGAGCTC-AG-T-AAGTTCCGGCGAA-GAATCGGAG-C--CAAAGGGGAAGATCTCG 75
||||||| || || | ||||||||| || ||||||||| | ||||||||| |||||||
Sbjct 99 GAGAGAGTTCGAGCTCGAGTTCCGGC-AACGAATCGGAGCCAACAAAGGGGACGATCTCG 157
Query 76 GAATATGAGAAGCAGAGGTTCTCAAGGATCGCTGAGAACAAAGCGAGGTTGGATGCCCTC 135
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 158 AAATATGAGAAGCAGAGGTTGTCAAGGATCGCTGAGAACAAAGCGAGATTGGATGCACTC 217
Query 136 GGCATCTCTAAAGCCGCCAAGGCTCTTGTGGCTCCATCTCCAATTTCGAAAAAACGTAGA 195
||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||||
Sbjct 218 GGCATCTCTAAAGCCGCCAAGGCTCTTCTGTCACCATCTCCAGTTTCGAAAAAACGTAGA 277
Query 196 GTAAAGCGGAATTCCGGTGAAGAAGACGATGATTATACTCCCGCAAACGCCGA---TGAT 252
|| ||||||||||||||||||||||||||||||||||| |||| || |||||| ||||
Sbjct 278 GTTAAGCGGAATTCCGGTGAAGAAGACGATGATTATACACCCGTAATCGCCGACGGTGAT 337
Query 253 G---ATGACGA--A-GACGA-G--GA-GTT-T---CT--G--G-GTAATTCAACT-TGTA 292
| |||| || | ||||| | || | | | | | | | || || ||||
Sbjct 338 GGTGATGAGGACGATGACGAAGTAGAAGAAATAGACGAAGACGAGGAGTTT--CTGTGTA 395
Query 293 AAAGAAAG-----G-CCTCTGCATCCAAGAGAAAAGTCTTATCTAAGAAGATTGTGAATA 346
|||||||| | |||||||||||||||||||||||| ||||| ||||||| ||||||
Sbjct 396 AAAGAAAGAACAAGTCCTCTGCATCCAAGAGAAAAGTCTCATCTAGGAAGATTTTGAATA 455
Query 347 CATCAGAT------GATGAG--T-ACGATGACTTAGACAAGGCAATAGCGCTTTCTCTAC 397
|||||| | | |||| | | ||||||||||||||||||||||||||||||||||
Sbjct 456 CATCAGTTTCCCTTGGTGAGGATGATGATGACTTAGACAAGGCAATAGCGCTTTCTCTAC 515
Query 398 AGGACTCTGTTGCAGGA 414
||| |||||||||||||
Sbjct 516 AGGGCTCTGTTGCAGGA 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5