BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352841
Length=2082
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38340.1 | Symbols: | Plant regulator RWP-RK family protein... 3271 0.0
AT4G24020.1 | Symbols: NLP7 | NIN like protein 7 | chr4:1247975... 76.8 8e-13
> AT4G38340.1 | Symbols: | Plant regulator RWP-RK family protein
| chr4:17954710-17957828 FORWARD LENGTH=2304
Length=2304
Score = 3271 bits (1771), Expect = 0.0
Identities = 1991/2096 (95%), Gaps = 19/2096 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAAAGCAACAACTCGGCCGTTGTGGATTTCCCTGACAACTTTATGGACCAACTC 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 214 ATGGAAGAAAGCAACAACTCGGCCGTTGTGGATTTTCCTGACAACTTTATGGACCAGCTC 273
Query 61 TTGTGGGAGGAGTGCAGCTGGGAAGAAGAGGCAACGCAGAATGACCAGGCA-T-T-AT-- 115
||||||||||||| ||||||||||||||||||||||| ||||||||||| | | ||
Sbjct 274 TTGTGGGAGGAGT---GCTGGGAAGAAGAGGCAACGCAGCATGACCAGGCATTATCATCA 330
Query 116 -CATCAGGGTTGAAGGAGAGGGTGGCTTGCGCCATGGGGCACCTGCAAGAGGTGATGGGA 174
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 CCATCAGGGCTGAAGGAGAGGGTGGCTTGCGCCATGGGGCACCTGCAAGAGGTGATGGGA 390
Query 175 GAGAGGGAGTTGCTGATCCAGCTGTGGGTGCCTGTTGAGACAAGGAGCGGACGAGTGCTG 234
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 391 GAGAGGGAGTTGCTGATCCAGCTGTGGGTGCCTGTTGAGACAAGGAGCGGCCGAGTGCTG 450
Query 235 AGCACGGAGGAGCAGCCTTACTCTATCAACACCTTCTCCCAGAGCCAGAGCCTGGGCCTC 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 451 AGCACGGAGGAGCAGCCTTACTCTATCAACACCTTCTCCCAGAGCCAGAGCCTGGCCCTC 510
Query 295 TACAGAGACGCCTCAGCTGGCTACAGCTTCGCAGCAGAGGTTGGGTCGGAGCAGCTGGTG 354
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 511 TACCGAGACGCCTCAGCTGGCTACAGCTTCGCAGCAGAAGTTGGGTCGGAGCAGCTGGTG 570
Query 355 GGGCTGCCTGGGCGTGTGTTCCTGAGGAGGATGCCTGAGTGGACCCCAGACGTTCGGTTT 414
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 571 GGGCTGCCTGGGCGTGTGTTCCTGAGGAGAATGCCTGAGTGGACCCCAGACGTTCGGTTT 630
Query 415 TTCAGGAGGGAGGAGTACCCTCGCATAAGATACGCCCGCAGGTACCAGGTTCGAGCCTCC 474
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 631 TTCAGGAAGGAGGAGTACCCTCGCATTGGATACGCCCGCAGGTACCAGGTTCGAGCCACC 690
Query 475 CTCGCTCTCCCACTCTTCCAAGGGACATCCGGGAACTGCGTGGCCGTGATGGAAATGGTC 534
||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 691 CTCGCCCTCCCACTCTTCCAAGGAACGTCCGGGAACTGCGTGGCCGTGATGGAGATGGTC 750
Query 535 ACCACTCACCGCAACTTGGAGTATGCCTCCCAGCTCCA-CACCATCTGCCACACCCTTGA 593
|||||||||||||||||||||||||||||||| ||| | |||||||||||| |||||||
Sbjct 751 ACCACTCACCGCAACTTGGAGTATGCCTCCCAACTC-AGCACCATCTGCCATGCCCTTGA 809
Query 594 GGCCTTTGATCTCCGGACTTCTCAAGCCTCCATCGTTCCAGCCTCTCTCAAGGTCAC-T- 651
||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| |
Sbjct 810 GGCCTTTGATCTCAGGACTTCACAAACCTCCATCGTTCCAGCCTCTCTCAAGGTCACCTC 869
Query 652 T-CTTCTTCTTCTTCATCAAGAACAGAGGTGGCCTCTATTCTCCAAGGCATCTGCAGTTC 710
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 TTCTTCTTCTTCTTCTTCAAGAACAGAGGTGGCCTCTATTCTCCAAGGCATCTGCAGTTC 929
Query 711 ACACCGACTCCCTCTAGCCGTCACGTGGGCTCACCAAGACTCCCCATCCTGCCTTTCGGC 770
|||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 930 ACACGGACTCCCTCTAGCCGTCACGTGGGGTCACCAAGACTCCTCATCCTGCCTTTCGGC 989
Query 771 TCTGATCTCCGCCTCTTACGCCGCTGACCAAGACAGCCGCTGCTTCCTGGCCGCCTGCTC 830
||| || || |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 990 TCTAATATCGGCCTCTTACGCCGCTGACCACGGCAGCCGCTGCTTCCTGGCCGCCTGCTC 1049
Query 831 TGAGCACCATCTACTCGTGGGCGAAGGAATCGCTGGAAGAGCTTTCGCTACCAAGAAACA 890
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1050 AGAGCACCATCTACTCGGGGGCGAAGGAATCGCTGGAAGAGCTTTTGCTACCAAGAAACA 1109
Query 891 GTGTTTCGCAACAGATGTGGCCATCTTCAGCAAGTGGAGCTACCCTCTCTCCCACTACGC 950
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 GTGTTTCGCAACAGATGTTGCCATCTTCAGCAAGTGGAGCTACCCTCTCTCCCACTACGC 1169
Query 951 CAGGATGTTCCATCTCCACGCTGCTCTTGCCGTCCCTATCCTGACCAGAGGCAACCGCAC 1010
|| ||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1170 CAAGATGTTCGACCTCCACGCTGCTCTTGCCGTCCCTATCCTGACAAGAGGCAACCGCAC 1229
Query 1011 TGTCCAATTTGTTGTCGAGCTCTTCTTCCCGAGAGACTGTCTTGACATCCAAACTCAGAG 1070
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1230 CGTCCAATTTGTTCTCGAGCTCTTCTTCCCGAGAGACTGTCTTGACATCCAAACTCATAG 1289
Query 1071 CCTGACCCTCGCCTCCCAACTCAACCTACGCTTCCAGAGCTCACCACATCTGATGGTAGA 1130
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1290 TCTGACCCTCGCCTCCCAACTCAAGCTACGCTTCCAGAGCTCACCACATCTGATGGTAGA 1349
Query 1131 CGACAACCAAATTGCACAACAAGTGAGAGACGCAGCCACACCACCCCTGACACAAGAGGA 1190
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 CGACAACCAAATTGCAGAGGAAGTGAGAGACGCAGCCACACCACCCCTGACACAAGAGGA 1409
Query 1191 TCCCAAGGGCAAACAAGTGTCGTTTTCCTTTTCTTCTTCTTCCTCTCTGGAGAACCGAAA 1250
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1410 TCCCAAGGGCAAACAAGTGTCGTTTTCCTTTTCTTCTGCTTCCTCTCTCGAGAACCGAAA 1469
Query 1251 ACGCAAGACAAAGGCTGAAAAGGATATCACTTTGGACACTCTCCGACAACACTTTGCTGG 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 ACGCAAGACAAAGGCTGAAAAGGATATCACTTTGGACACTCTCCGACAACACTTTGCTGG 1529
Query 1311 CAGCCTTAAGGACGCCGCTAAAAACATTGGTGTATGTCCCACAACCTTGAAGAGGGTCTG 1370
|||||| |||||||||||||||||||||||||||||||| || |||||||||||| | ||
Sbjct 1530 CAGCCTAAAGGACGCCGCTAAAAACATTGGTGTATGTCCGACGACCTTGAAGAGGATATG 1589
Query 1371 CAGACAACACGGAATCTCAAGGTGGCCATCGAGGAAGATCAAGAAAGTAGGACATTCTCT 1430
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1590 CAGACAAAACGGAATCTCAAGGTGGCCATCGAGGAAGATCAAGAAAGTTGGACATTCTCT 1649
Query 1431 TCGGAAACTGCAGGTGGTGATGGACTCTGTTGAAGGAGTTCAAGGctctctccatctcgc 1490
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 TCGAAAACTGCAGGTGGTGATGGACTCTGTTGAAGGAGTTCAAGGCTCTCTCCATCTCGC 1709
Query 1491 ctccttctactcaagcttccctcaacttcaatcttcttcttcttcttcttTTCCTTTGAT 1550
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1710 CTCCTTCTACTCAAGTTTCCCTCAACTACAATCTTCTTCTTCTTCTTCTTTTCCTTTCAT 1769
Query 1551 TAATCCAACCCAAACTGTCCATGTGCCTCCAAAGTCACCACCTTCGTCATCTGGCAGCCA 1610
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1770 TAACCCAACCCAAACTGTCCATGTGCCTCCAAAGTCACCACCTTCGTCATCTGGCAGCCA 1829
Query 1611 GGGCTCTTCAGGTTCAAGCACTTGTTGCTCCTCCGAAGAGCAACAACTTGGTGGCTTCGA 1670
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1830 GAGCTCGTCAGGTTCAAGCACTTGTTGCTCCTCCGAAGAGCAACAACTTGGTGGCTTCCA 1889
Query 1671 AAACCCATCTCTCAGTCATCCACAGCTGCTTACTCTAAGCAGCCTGCACGAGGACCAGAG 1730
||| ||| |||||||||||||||| |||||||||||||||||| ||||||||||||| ||
Sbjct 1890 AAAACCAGCTCTCAGTCATCCACAACTGCTTACTCTAAGCAGCATGCACGAGGACCAAAG 1949
Query 1731 GGCAGTTCGTGTAACCTCATCCCTACCCCCATTGCCATCCTCAAC-AGCTCCAAGGAAAG 1789
| | |||||||| |||||||||||||||||| |||||||| |||| | ||||||||||||
Sbjct 1950 GCCTGTTCGTGTGACCTCATCCCTACCCCCACTGCCATCCGCAACTA-CTCCAAGGAAAG 2008
Query 1790 CAAAAGACGGGATGAAAGTGAAAGCTATGTTTGGAGATTCGATGCTGAGGATGAGCCTGC 1849
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 2009 CAAAGGACGGGATGAAAGTGAAGGCTATGTTTGGAGATTCGATGCTGAGAATGAGCCTGC 2068
Query 1850 AGCCCCACTCACGTCTCACAGACCTCAGAAGAGAGATCGCAAAGCGGTTTGGGATGGACG 1909
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2069 TTCCACACTCTCGTCTCACAGACCTCAGAAGAGAGATCGCAAAGCGGTTTGGGATGGATG 2128
Query 1910 ATGTTTTGACAAGTAACTTCAGTCTCAAGTATCTAGACGATGATCAAGAATGGGTTCTCT 1969
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2129 ATGTTTTGAGAAGTAACTTCAGTCTCAAGTATCTAGACGATGATCAAGAATGGGTTCTCT 2188
Query 1970 TGACGTGCGATGCTGATCTTGAGGAGTGCATACAAGTCTACAAGTCCTC-TCT-T-AAAG 2026
||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 2189 TGACGTGCGATGCTGATCTTGAGGAGTGCATACAAGTCTACAAGTCCTCCTCTCTTAAAG 2248
Query 2027 AAACTATCAGAATATTGGTTCACCGTCCTCTTTCTCTTCCTTCCTTTGGTTCTTAA 2082
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2249 AAACTATCAGAATATTGGTTCACCATCCTCTTTCTCGTCCTTCCTTTGGTTCTTAA 2304
> AT4G24020.1 | Symbols: NLP7 | NIN like protein 7 | chr4:12479752-12483993
FORWARD LENGTH=3203
Length=3203
Score = 76.8 bits (41), Expect = 8e-13
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 1369 TGCAGACAACACGGAATCTCAAGGTGGCCATCGAGGAAGATCAAGAAAGT 1418
||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2019 TGCAGGCAACACGGAATCTCGCGGTGGCCATCGAGGAAGATCAAGAAAGT 2068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103212320520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5