BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352843
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38360.2 | Symbols: LAZ1 | Protein of unknown function (DUF3... 2394 0.0
> AT4G38360.2 | Symbols: LAZ1 | Protein of unknown function (DUF300)
| chr4:17967107-17969958 FORWARD LENGTH=1900
Length=1900
Score = 2394 bits (1296), Expect = 0.0
Identities = 1411/1464 (96%), Gaps = 18/1464 (1%)
Strand=Plus/Plus
Query 1 ATGGATATTATATCAAAGTCTTACCATCT-C---CT--TGCTTACTCGGCTCCTGCTTGG 54
||||||| ||| | ||||||||||||||| | || |||||||||||||||||| |||
Sbjct 283 ATGGATA-TAT-T-AAAGTCTTACCATCTCCTAGCTGCTGCTTACTCGGCTCCTGCGTGG 339
Query 55 GCAAGCTTTATGGCCGGTGCTTTTTTGGTTCTCACGCTCTCCCTTTCCTTGTTTCTTGTC 114
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 340 GCAAGCTTTATGGCCGGTGCTTTTTTGGTTCTCACCCTCTCCCTTTCCTTGTTTCTTGTC 399
Query 115 TTCGATCACCTTTCTACTTACAAGAACCCTGAGGAGCAAAAGTTTTTGATCGGAGTCATC 174
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 400 TTCGATCACCTTTCTACTTACAAGAACCCTGAGGAGCAAAAGTTTTTGATTGGAGTCATC 459
Query 175 CTCATGGTCCCTTGCTATTCAATTGAATCGTTTGCATCACTTGTCAAACCATCCATCAGT 234
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 460 CTCATGGTCCCTTGCTATTCTATTGAATCGTTTGCATCACTTGTTAAACCATCCATCAGT 519
Query 235 GTTGATTGTGGGATCCTTCGAGACTGCTATGAATCCTTTGCCATGTACTGTTTTGGTAGA 294
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 GTTGACTGTGGGATTCTTCGAGACTGCTATGAATCCTTTGCCATGTACTGTTTTGGTAGA 579
Query 295 TACCTTGTTGCCTGC-TTAGGTGGGGAAGAAAGGACTATTGAGTTTATGGAAAGACAAGG 353
||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 580 TACCTTGTTGCCTGCATT-GGTGGGGAAGAAAGGACTATCGAGTTTATGGAAAGACAAGG 638
Query 354 GCGTAAGAGCTTTAAGACGCCACTGTTAGATCAGAAGGATGAAAAGGGAA-CAATCAAAC 412
|||||||||||||||||||||||| |||||||| |||||||||||||||| | |||||||
Sbjct 639 GCGTAAGAGCTTTAAGACGCCACTCTTAGATCACAAGGATGAAAAGGGAATC-ATCAAAC 697
Query 413 ATCCTTTTCCTATGAATTTATTCTTAAAACCGTGGAGGCTCAGTCCCTGGTTTTATCAAG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 ATCCTTTTCCTATGAATTTATTCTTAAAACCGTGGAGGCTCAGTCCCTGGTTTTATCAAG 757
Query 473 TTGTTAAGTTTGGTATTGTTCAATATATGATAATAAAGTCTTTAACTGCCCTCACAGCTC 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TTGTTAAGTTTGGTATTGTTCAATATATGATAATAAAGTCTTTAACTGCCCTCACAGCTC 817
Query 533 TGATTCTTGAAGCGTTCGGTGTGTACTGTGAAGGAGAGTTTAAATGGGGATGTGGGTACC 592
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 TGATTCTTGAAGCCTTCGGTGTGTACTGTGAAGGAGAGTTTAAATGGGGATGTGGGTACC 877
Query 593 CTTATTTGGCAGTTGTTCTAAATTTTAGTCAGTCATGGGCATTATACTGTCTGGTTCAGT 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 CTTATTTGGCAGTTGTTCTAAATTTTAGTCAGTCATGGGCATTATACTGTCTGGTTCAGT 937
Query 653 TCTATGGTGCAACGAAAGATGAGCTTGCACACATA-AAGCCGCTGGCTAAATTTCTAACA 711
|||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 938 TCTATGGTGCAACGAAAGATGAGCTTGCACACATCCAA-CCACTGGCTAAATTTCTAACA 996
Query 712 TTTAAGTCGATTGTGTTTCTCACTTGGTGGCAAGGTGTTGCCATTGCTCTTCTCTCTTCC 771
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 997 TTTAAGTCGATTGTGTTTCTCACTTGGTGGCAAGGTGTTGCCATTGCTCTCCTCTCTTCC 1056
Query 772 CTCGGTTTGTTCAAAAGTTCAATTGCACAAAGCTTGCAGTTGAAGACTAGTGTTCAAGAT 831
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1057 CTCGGCTTGTTCAAAAGTTCAATTGCACAAAGCTTGCAGTTGAAGACTAGCGTGCAAGAT 1116
Query 832 TTCATCATTTGCATAGAGATGGGTATTGCTTCCGTTGTTCACCTGTACGTATTCCCAGCA 891
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1117 TTCATCATTTGCATAGAGATGGGTATTGCTTCCGTTGTTCACCTGTATGTATTCCCAGCA 1176
Query 892 AAACCTTACGGTCTAATGGGAGACCGCTTTACAGGATCCGTTTCAGTTCTTGGTGACTAT 951
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1177 AAGCCTTATGGTCTAATGGGAGACCGCTTTACTGGATCCGTTTCAGTTCTTGGTGACTAT 1236
Query 952 GCATCTGTTGACTGTCCTATTGATCCAGATGAGATTAGGGACAGTGAGAGGCCAACAAAG 1011
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1237 GCATCTGTTGACTGTCCTATTGATCCAGATGAGATTAGGGACAGTGAGAGACCAACAAAA 1296
Query 1012 GTCCGCCTACCACATCCTGATGTTGATATCAGAAGTGGTATGACCATCAAAGAAAGCATG 1071
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1297 GTCCGTCTACCACATCCTGACGTTGATATCAGAAGTGGTATGACCATCAAAGAAAGTATG 1356
Query 1072 AGAGATGTTTTCGTTGGTGGTGGTGAATATATTGTTAAAGACGTGAGATTCACAGTGACT 1131
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1357 CGAGATGTTTTCGTTGGTGGTGGTGAATACATTGTTAAAGACGTGAGATTCACAGTGACT 1416
Query 1132 CAAGCGGTGGAGCCTATGGAGAAGAGCATCACAAAGTTCAATGAGAAACTGCACAAGATC 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 CAAGCGGTGGAGCCTATGGAGAAGAGCATCACAAAGTTCAATGAGAAACTGCACAAGATC 1476
Query 1192 TCCCAGAACATAAAGAAACACGACAAGGAAAAGAGAAGAGTTAAGGACGATAGTTGCATG 1251
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1477 TCCCAGAACATTAAGAAACACGACAAGGAAAAGAGAAGAGTGAAGGACGATAGTTGCATG 1536
Query 1252 TCATCATC-C--AGTCGGAGAGTGATTCGCGGGATCGATGATCCGCTTCTAAATGGGAGT 1308
|||||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1537 TCATCATCACCCAGTCGGAGAGTGATTCGAGGGATTGATGATCCGCTTCTAAATGGGAGT 1596
Query 1309 TTTAGCGATAGTGGAGTTACAAGAACCAAAAAGCACAGGCGTAAATCAGGATACACTAGC 1368
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1597 TTTAGCGATAGTGGAGTTACAAGAACCAAAAAGCACAGGCGTAAATCGGGATACACTAGC 1656
Query 1369 GCAGAGAGCGGAGGAGAGAGCAGTAGTGATCAAGCTTATGGTGGATTTGAAGTGAGGGGC 1428
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1657 GCAGAGAGCGGGGGAGAGAGCAGTAGTGATCAAGCTTATGGTGGATTTGAAGTCAGGGGC 1716
Query 1429 CGCAGATGGATCACCAAAGATTAA 1452
||||||||||||||||||||||||
Sbjct 1717 CGCAGATGGATCACCAAAGATTAA 1740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71585977170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5