BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352898
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39000.1 | Symbols: AtGH9B17, GH9B17 | glycosyl hydrolase 9B... 2239 0.0
AT4G38990.1 | Symbols: AtGH9B16, GH9B16 | glycosyl hydrolase 9B... 431 1e-119
> AT4G39000.1 | Symbols: AtGH9B17, GH9B17 | glycosyl hydrolase
9B17 | chr4:18171722-18173797 REVERSE LENGTH=1482
Length=1482
Score = 2239 bits (1212), Expect = 0.0
Identities = 1398/1487 (94%), Gaps = 16/1487 (1%)
Strand=Plus/Plus
Query 1 ATGAAACCTTCGATTTACTTTGTAACCGTTTTCATACTTCTA------CTTCTACCAACG 54
|||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAAAGCTTCGATTTACCTTGTAACCGTTTTCATACTTCTACTTCTGCTTCTACCAACG 60
Query 55 GCGATCCCTCACGACTACTCCGACGCTCTTAGAAAGTCAATACTCTTTTTCGAAGGTCAA 114
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 61 GCGATCCCTCACGACTATTCCGATGCTCTTAGAAAGTCAATCCTCTTTTTCGAAGGTCAA 120
Query 115 CGCTCTGGTCGTCTTCCAAAACAACAAAGGATGACGTGGCGTAGTAATTCTGCACTCAAC 174
||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||
Sbjct 121 CGCTCTGGTCGTCTTCCAAAACAACAAAGGATGGCGTGGCGTAGAAACTCTGCACTCAAC 180
Query 175 GACGGCCGAAATCTCAAAACTGACCTCGTTGGTGGTTACTACGACGCCGGAGACAACGTT 234
||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GACGGAAAAAACCTCAAAACCGACCTCGTTGGTGGTTACTACGACGCCGGGGACAACGTT 240
Query 235 AAGTTTCATTTTCCTATGGCTTTTACGGCCACGATGCTTGCTTGGAGTTCTATTGACTTC 294
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 AAGTTTCATTTTCCGATGGCTTTTACGGCCACGATGCTTGCTTGGAGTTCTGTTGACTTC 300
Query 295 GGACGCTATATGTCTCAGAATGATTTCAGACATAATCTCGTAGCCCTCAAGTGGGCCACT 354
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GGACGCTATATGTCTCAGCATGATTTCAGACATAATCTCGTAGCCGTCAAGTGGGCCACT 360
Query 355 GATTATCTCCTTAAGACCGTTTCACAACTCCCTGATCGCATTTTCGTCCAAGTAGGTGAA 414
||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct 361 GATTATCTCCTTAAGACCGTTTCACAACTCCCTAATCGCATTTTCGTCCACGTCGGTGAA 420
Query 415 GCACAAGCAGACCATGATTGTTGGGAAAGACCGGAAGATATGGACACGCCACGAACTGCT 474
| |||| | ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 GTACAACCGGACCACGATTGTTGGGAAAGACCGGAAGATATGGACACGCCACGAACCGCT 480
Query 475 TTCGCCTTAGATGCACCATATCCAGCCTCCGATTTAGCGGGAGAAATTGCAGCAGCTTTG 534
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 TTCGCCTTAGATGCACCATATCCAGCCTCCGATTTAGCGGGAGAAATCGCAGCAGCTTTA 540
Query 535 GCAGCCGCTTCAATTGCATTCAAACAAGCAAATCCTAAGTATTCCACAATATTACTCAAT 594
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 541 GCAGCCGCTTCAATTGCATTCAAACAAGCAAATCCTAAGTATTCCGCAATATTACTCAAT 600
Query 595 AAAGCCGTACAAACGTTTCAGTATGCAGATTCACATCGAGGTTCTTATACCGAAAATCCG 654
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 601 AAAGCCGTACAAACGTTTCAGTACGCAGATTCACATCGAGGTTCTTACACCGATAATCCG 660
Query 655 GGAGTCAAACAAGCCGTTTGCCCGTTTTACTGTAGTGTTAATGGATATAAGGACGAGTTG 714
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGAATCAAGCAAGCCGTTTGCCCGTTTTACTGTAGTGTTAATGGATATAAGGACGAGTTG 720
Query 715 CTATGGGGAGCTGCGTGGCTGAGACGAGCAACCGGCGAAGATTATTATCTGACATACTTA 774
|||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||
Sbjct 721 CTATGGGGAGCTGCGTGGTTGAGACGAGCAACCGGCGAAGATTCTTATCTGAGATACTTA 780
Query 775 GT-GACCAATGGTCAAGTTTTCGGTGCAAA-TTTCAATTACTTCGAGTTTGGCTGGGACA 832
|| || ||||||||||| |||||||| ||| || ||||||||| ||||||||||||||||
Sbjct 781 GTGGA-CAATGGTCAAGCTTTCGGTG-AAAGTTCCAATTACTTTGAGTTTGGCTGGGACA 838
Query 833 ACAAGGTTGGGGGTGTTAATGTTCTCATTGCCAAGGAAGTATTTGAGAAGAATGTGACTG 892
|||| ||||||||||||||||||||| |||||||||||||| || |||| |||||||| |
Sbjct 839 ACAAAGTTGGGGGTGTTAATGTTCTCGTTGCCAAGGAAGTACTTCAGAATAATGTGACCG 898
Query 893 CGTTAGCAGCATATAAAGATACCGCAGAGAAAATGATGTGTGCATTTTTGCCGGAAACCA 952
|| |||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 899 CGATAGCCGCATATAAAGATACCGCGGAGAAAATGATGTGTTCATTTTTGCCGGAAACCA 958
Query 953 ATGGTCCACATATGACTTACACTCCCGGCGGTCTCCTTTACAAACAC-GGAAGCAGTCAG 1011
|||||||||||||| |||||||||||||||||||| ||||||||| | ||||||| ||||
Sbjct 959 ATGGTCCACATATGTCTTACACTCCCGGCGGTCTCATTTACAAAC-CTGGAAGCACTCAG 1017
Query 1012 CTACAGAACACGGCCGCACTATCTTTCCTTCTCCTTACCTATGCAGATTACCTCACTACA 1071
|| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1018 CTCCAGAACACGGCCGCACTATCTTTCCTTCTCCTTACCTACGCAGATTACCTCTCTACA 1077
Query 1072 TCCTCTCAACCA-CTCAATTGCGGTAACCTCAAGTTTCAACCGGATTCTCTTCGCCGCAT 1130
|| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TCTTCTCAA-CAGCTCAATTGCGGTAACCTCAAGTTTCAACCGGATTCTCTTCGCCGCAT 1136
Query 1131 AGTCAAACGACAGGTAGACTACGTTTTGGGAGATAATCCAATGAAGTTGTCATACATGAT 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AGTCAAACGACAGGTAGACTACGTTTTGGGAGATAATCCAATGAAGTTGTCATACATGAT 1196
Query 1191 TGGGTATGGTGAGCAGTACCCGCGACTGATCCACCACCGTGGCTCGTCTATTCCGTCTTT 1250
|||||| || |||| ||||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 1197 TGGGTACGGCGAGCGGTACCCGGGACTGATCCACCACCGTGGCTCGTCTATACCGTCTGT 1256
Query 1251 TACCGTTCATCCGACTGCATTTGGGTGC-TCAGCAGGATGGAATATTTTCGCATCACCCA 1309
||||||||||||| |||| ||||||||| | ||||||||||||||||||| |||||||||
Sbjct 1257 TACCGTTCATCCGGCTGCCTTTGGGTGCAT-AGCAGGATGGAATATTTTCTCATCACCCA 1315
Query 1310 ATCCAAACCCCAACATTCTTATTGGTGCGGTGATTGGCGGGCCTGACGCAGATGATAAAT 1369
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 1316 ATCCAAACCCCAACATTCTTATAGGTGCGGTGATTGGCGGGCCTGACGTAGATGATAGAT 1375
Query 1370 TTATTGGAGGTCGGACAAATGCTAGTGAGACTGAGCCCACAACGTACATCAATGCACCTT 1429
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1376 TTATTGGAGGTCGGACAAATGCTAGTGAGACTGAGCCCACAACCTACATCAATGCACCTT 1435
Query 1430 TTGTTGGTGTATTTGCGTACTTTAAAAGCAACCCCAAGTTCTCTTGA 1476
|||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 1436 TTGTTGGTGTCTTTGCGTACTTCAAAAGCAACCCCAACTTCTCTTGA 1482
> AT4G38990.1 | Symbols: AtGH9B16, GH9B16 | glycosyl hydrolase
9B16 | chr4:18169175-18170949 REVERSE LENGTH=1044
Length=1044
Score = 431 bits (233), Expect = 1e-119
Identities = 455/561 (81%), Gaps = 20/561 (4%)
Strand=Plus/Plus
Query 46 CTACCAACGGCGATCCCTCACGACTACTCCGACGCTCTTAGAAAGTCAATACTCTTTTTC 105
||||||||| |||| |||||||||||||||| ||||| | ||||||||| ||||| |||
Sbjct 46 CTACCAACGACGATTTCTCACGACTACTCCGATGCTCTCACAAAGTCAATCCTCTTCTTC 105
Query 106 GAAGGTCAACGCTCTGG-TCGTCTTCCAAAACAACAAAGGATGACGTGGCG-TAGTAATT 163
||||||||||| ||||| | ||| |||| | |||| |||||||||||||| | || |
Sbjct 106 GAAGGTCAACGATCTGGAT-ATCTCCCAAGAGAACAGAGGATGACGTGGCGCCA-CAACT 163
Query 164 CTGCACTCAACGACGGCCGA-AATCTCAAAACT-GACCTCGTTGGTGGTTACTACGACGC 221
| ||||||||||| || | | || ||| || | ||||||||||||||||||||||||||
Sbjct 164 CCGCACTCAACGATGG-CAAGAACCTC-AATGTCGACCTCGTTGGTGGTTACTACGACGC 221
Query 222 CGGAGACAACGTTAAGTTTCATTTTCCTATGGCTTTTACGGCCACGATGCTTGCTTGGAG 281
|||||||||| |||| || |||||||| |||||||||||| | ||||||||||| |||||
Sbjct 222 CGGAGACAACATTAAATTCCATTTTCCGATGGCTTTTACGACTACGATGCTTGCGTGGAG 281
Query 282 TTCTATTGACTTCGGACGCTATATGTCTCAGAATGATTTCAGACATAATCTCGTAGCCCT 341
|||| ||||||||| | || ||||||| | |||| || | | |||||||| || ||
Sbjct 282 CGCTATCGACTTCGGAAGTTACATGTCTCCGGCTGATCTCCGGGACAATCTCGTCGCTCT 341
Query 342 CAAGTGGGCCA-CTGATTATCTCCTTAAGACCGTTTCACAACTCCCTGATCGCATTTTCG 400
| ||||| || | |||||||||| ||||||||||| ||||||||| ||||||| ||||
Sbjct 342 CCGGTGGGGCAGCA-ATTATCTCCTCAAGACCGTTTCCCAACTCCCTAATCGCATCTTCG 400
Query 401 TCCAAGTAGGTGAAGCA-CAAGCAGACCATGATTGTTGGGAAAGACCGGAAGATATGGAC 459
|||||||||||||| || || | || ||| | |||||||| ||||| || || ||||||
Sbjct 401 TCCAAGTAGGTGAACCAACAC-CGGATCATCAGTGTTGGGAGAGACCAGAGGACATGGAC 459
Query 460 ACGCCACGAACTGCTTTCGC-CTTAGATGCACC-ATATCCAGCCTCCGATTTAGCGGGAG 517
|| ||||| || |||| ||| || || ||||| | | |||||||| |||||||| ||||
Sbjct 460 ACACCACGGACCGCTTACGCACTG-GAAGCACCGAAA-CCAGCCTCTGATTTAGCTGGAG 517
Query 518 AAATTGCAGCAGCTTTGGCAGCCGCTTCAATTGCATTCAAACAAGCAAATCCTA-AGTAT 576
|||| ||||| || ||||||||||| ||||| |||||||||| | |||||| | |||
Sbjct 518 AAATCGCAGCTGCGTTGGCAGCCGCCTCAATCGCATTCAAACGATTTGATCCTAGA-TAT 576
Query 577 TCCACAA-TATTACTCAATAA 596
|| | || |||| ||| ||||
Sbjct 577 TCTA-AACTATTGCTCGATAA 596
Score = 303 bits (164), Expect = 2e-81
Identities = 324/400 (81%), Gaps = 16/400 (4%)
Strand=Plus/Plus
Query 690 TGTTAATGGATATAAGGACGAGTTGCTATGGGGAGCTGCGTGGCTGAGACGAGCAACCGG 749
||| || |||||| |||| || || ||||||||||||| ||||||||| |||| |||||
Sbjct 615 TGTAAACGGATATGAGGATGAATTATTATGGGGAGCTGCATGGCTGAGAAGAGCGACCGG 674
Query 750 CGAAGATTATTATC-TGACATACTTAGT-GACCAATGGTCAA-GTTTTCGGTGCAAATTT 806
|||||| ||| | | | ||||||||| || ||| ||||| |||| ||| || |||
Sbjct 675 TAAAGATTCTTA-CATTAAATACTTAGTGGA-GAATCGTCAATCTTTTGGGT-CAGATTC 731
Query 807 CAATTACTTCGAGTTTGGCTGGGACAACAAGGTTGGGGGTGTTAATGTTCTCATTGCCAA 866
|||||||||||||||||| ||||| ||||| |||||||| || ||||| ||| |||||||
Sbjct 732 CAATTACTTCGAGTTTGGATGGGATAACAAAGTTGGGGGCGTCAATGTCCTCGTTGCCAA 791
Query 867 GGAAGTATTTGAGAAGAATGT-GACTGCG-TTAGCAGCATATAAAGATACCGCAGAGAAA 924
||||||||||||||||||||| | ||||| || ||| | ||||| ||||| || || |||
Sbjct 792 GGAAGTATTTGAGAAGAATGTTG-CTGCGATT-GCACCGTATAAGGATACAGCGGA-AAA 848
Query 925 AT-GATGTGTGCATTTTTGCCGGAAAC-CAATGGTCCACATATGACTTACACTCCCGGCG 982
|| ||||||| | ||||| | |||||| | |||| ||||||||| |||| ||||||| |
Sbjct 849 ATTGATGTGTTCGTTTTTTCTGGAAACTCC-TGGTGCACATATGAGTTACTCTCCCGGTG 907
Query 983 GTCTCCTTTACAAACACGGAAGCAGTCAGCTACAGAACACGGCCGCACTATCTTTCCTTC 1042
|||| |||||||||| ||||||||| ||||| || ||||| | |||| | ||||| || |
Sbjct 908 GTCTTCTTTACAAACCCGGAAGCAGCCAGCTCCAAAACACCGTCGCATTGTCTTTTCTCC 967
Query 1043 TCCTTACCTATGC-AGATTACCTCACTACATCCTCTCAAC 1081
| || || || || | |||||||| | | |||||||||||
Sbjct 968 TTCTCACTTACGCCA-ATTACCTCTCCAAATCCTCTCAAC 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5