BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg353015

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G40042.1 | Symbols:  | Microsomal signal peptidase 12 kDa su...   431    2e-120


> AT4G40042.1 | Symbols:  | Microsomal signal peptidase 12 kDa 
subunit (SPC12) | chr4:18559103-18559844 FORWARD LENGTH=651
Length=651

 Score =  431 bits (233),  Expect = 2e-120
 Identities = 269/286 (94%), Gaps = 3/286 (1%)
 Strand=Plus/Plus

Query  45   AGATATGGATTGGCAAGGACAGAAATTGGCGGAGCAGTTAATGCAGATCCTGCTTTTGAT  104
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct  92   AGATATGGATTGGCAAGGGCAGAAATTGGCGGAGCAGTTAATGCAGATCCTGCTTCTGAT  151

Query  105  CGCCGCCGTTGTGGCGTTCGTTGTTGGTTACGCAACGGCGTCGTTTAGGACGATGATGTT  164
            ||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct  152  CGCCGCCGTTGTGTCGTTCGTTGTTGGTTACACAACGGCGTCGTTTAGGATGATGATGTT  211

Query  165  GATCTACGCCGGAGGTGTTGTCCTCACGACTCTGATCACTATACCTAATTGGCCTTGCTT  224
            ||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct  212  GATTTACGCCGGAGGTGTTGTTCTGACGACTCTGATCACAATACCTAATTGGCCTTGCTT  271

Query  225  TAATCGTCATCCTCTTAAGTGGTTAGATCCAAGTGAAGCTGAGAAGCATCCAAAACCTCA  284
            ||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct  272  TAATCGTCATCATCTTAAGTGGTTAGATCCAAGTGAAGCAGAGAAACATCCTAAACCTCA  331

Query  285  AGTTGTTGTTGTTAGCTCGAAGAAGAAATCCTC-T--AAAAAGTAG  327
            |||||||||||||||||| |||||||||||||| |  |||||||||
Sbjct  332  AGTTGTTGTTGTTAGCTCCAAGAAGAAATCCTCCTCTAAAAAGTAG  377



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15231127947


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5