BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg353016

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G40045.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   475    1e-133


> AT4G40045.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:18559784-18560657 
REVERSE LENGTH=725
Length=725

 Score =  475 bits (257),  Expect = 1e-133
 Identities = 300/319 (94%), Gaps = 9/319 (3%)
 Strand=Plus/Plus

Query  12   GAGAACAAATGCTCAAAATGGCGGCAGCAGCGACTCGGCCAAGGAGTCTTCCGGTGGCGG  71
            |||||||||||||||||||   ||||  | ||||||||||||||||||||| ||||||||
Sbjct  274  GAGAACAAATGCTCAAAAT---GGCA--A-CGACTCGGCCAAGGAGTCTTCTGGTGGCGG  327

Query  72   AAACAGACCGGTTAGTAACGATGATGATGGTAATGGTACCAAGAAAGACCAATTTGCTGG  131
            ||||||||| |||| ||||   ||||||||||||||| |||||||||||||||| |||||
Sbjct  328  AAACAGACCTGTTACTAAC---GATGATGGTAATGGTTCCAAGAAAGACCAATTCGCTGG  384

Query  132  TTTTAGTTTCAAGTGGGGTGAGCTGTTGAATCCAGATCAAGATAACTTTGTGGTTGTTGG  191
            ||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct  385  TTTCAGTTTCAAGTGGGGAGAGCTGTTGAATCCAGATCAAGATAACTTTGTGGCTGTTGG  444

Query  192  ATTAGCTGGAGTATTGACTTGGGCTAGCCTTCAAGTCTTGTCTCAGCTTTTCTTCATCTC  251
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ATTAGCTGGAGTGTTGACTTGGGCTAGCCTTCAAGTCTTGTCTCAGCTTTTCTTCATCTC  504

Query  252  TTTCGCCATCCTTGTCGCTGCTCTCAAGTATTCATTTATCGCTGCACTACTCATTTTCAT  311
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  505  TTTCGCCATCCTTGTCGCTGCTCTCAAGTATTCATTTATCGCTGCTCTACTCATTTTCAT  564

Query  312  TCTCGTCACTCTCCTCTAG  330
            |||||||||||||||||||
Sbjct  565  TCTCGTCACTCTCCTCTAG  583



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15381931194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5