BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353021
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
AT4G40080.1 | Symbols: | ENTH/ANTH/VHS superfamily protein | c... 1696 0.0
AT4G40085.1 | Symbols: | other RNA | chr4:18579242-18580377 RE... 586 1e-166
> AT4G40080.1 | Symbols: | ENTH/ANTH/VHS superfamily protein |
chr4:18579314-18580717 FORWARD LENGTH=1330
Length=1330
Score = 1696 bits (918), Expect = 0.0
Identities = 1030/1085 (95%), Gaps = 4/1085 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAGAATTACGAGTTTTGCAGATCTAATGGGTATG-ATCAAAGACAAAGCTTCTCA 59
||||||||||| || ||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct 58 ATGGGAAGAATAACAAGTTTTGCAGATCTAATAGGTA-GAATCAAAGACAAAGCTTCTCA 116
Query 60 AGGCAAAGCTGCTTTAGTTTCATCACACACTAAAAGCAAAACTGTTTCTTTCCATCTCTC 119
| |||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||
Sbjct 117 AAGCAAAGCTGCTTTAGTATCATCAAACACTAAAAGCAAAACTCTCTCTTTCCATCTCTC 176
Query 120 TGTCCTCCGTGCCACTACTCATGACCCTTCAACGCCGCCGGGAAATCGTCACCTCGCTGT 179
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 177 TGTCCTCCGTGCCACTACTCATGACCCTTCAACGCCGCCGGGGAATCGTCACCTCGCCGT 236
Query 180 TCTTCTCTCCGCCGGTACTGGCTCACGAGCCACCGCTGCTTCAGCTGTCGAATCTATAAT 239
| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 237 TATTCTCTCCGCCGGTACTGGCTCACGAGCCACCGCTTCTTCAGCTGTCGAATCCATAAT 296
Query 240 GGAACGTCTTCACACAAGCAGAGATGCTTGCGTAGCTCTCAAATCTTTGATCATTATCCA 299
||||||||||||||| | | |||||||||||||||||||||| |||||||||||||||||
Sbjct 297 GGAACGTCTTCACACCACCGGAGATGCTTGCGTAGCTCTCAAGTCTTTGATCATTATCCA 356
Query 300 TCACATCGTCAAACACGGTCGTTTCATACTCCAAGATCAGCTCTCTGTTTTTCCGGCTTC 359
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 357 TCACATCGTCAAACACGGTCGTTTCATCCTCCAAGATCAGCTCTCTGTATTTCCAGCTTC 416
Query 360 CGGTGGCCGGAATTATCTGAAACTTTCTGGTTTTAGAGATGAGAAATCTCCTTTGATGTG 419
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 417 CGGTGGTCGGAATTATCTGAAACTTTCTGCTTTTAGAGATGAGAAATCTCCTTTGATGTG 476
Query 420 GGAGCTTTCTTCTTGGGTCCGATGGTACGCTTTATATCTTGAGCATCTATTATCAACTTC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGAGCTTTCTTCTTGGGTCCGATGGTACGCTTTATATCTTGAGCATCTATTATCAACTTC 536
Query 480 AAGAATCATGGGATTTTTCATATCTTCAACATCGAGCACAATTCACAAAGAGGAATACGA 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 537 AAGAATCATGGGATTTTTCATATCTTCAACATCGAGTACAATTCACAAAGAGGAATACGA 596
Query 540 AGAAATGGTTTCTTCTCTTACCAACGCTGA-CTTGCTTCGTGAGATCGATGCGCTCGTTG 598
||||||||||||||||||||||||| |||| || |||||||||||||||||| |||||||
Sbjct 597 AGAAATGGTTTCTTCTCTTACCAACTCTGATCT-GCTTCGTGAGATCGATGCTCTCGTTG 655
Query 599 GTCTACTAGAAGAAGCATGTAAAATTCCGGATCTACCCTTCTCCGGTGGCAAATCTCTTG 658
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 656 GTCTACTAGAAGAAGCATGTAAAATTCCGGATCTACCCTTCTCCGGTGGGAAATCCCTCG 715
Query 659 CAGACAAAATCACCCATTTGGTCGGAGAAGACTACGTGTCTTCGATCAACGAGCTTTACA 718
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 716 CAGACAAAATCACTCAGTTGGTAGGAGAAGACTACGTGTCTTCGATCAACGAGCTTTACA 775
Query 719 CGAGACTCAACGAGTTTAAAGAACGATCCAACACTTTGAGCTTTGGAGATATGATTGAGC 778
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 776 CGAGATTCAACGAGTTTAAAGAACGATCCAACACTTTGAGCTTTGGAGATACGATCGAGC 835
Query 779 TTGTCTGTGCTTTGAAGCGGCTCGAGAGTTGTAAAGAGAGATTGTCTGAAATCTGCCATG 838
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 836 TTGTCTGTGCTTTGAAGCGGCTCGAGAGTTGTAAAGAGAGGTTGTCTGAAATCTGCCATG 895
Query 839 GGAACTGGAAGAGAGGTTGGATCGATGGGTTCTGGGGTTTGGTTCTGGAGGTCAAGGGTA 898
|||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 896 GGAATTGGAAGAGAGGTTGGATTGATGGGTTCTGGGGTTTGGTTCTTGAGGTCAAGGGTA 955
Query 899 TAATTGGTAATTTAGAGGATAACTATGGGCAGATTGAGAAATCGATTGTTGGGTTTGGGA 958
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 956 TTATTGGTAATTTAGAGGATAATTATGGGCAGATTGAGAAATCGATTGTTGGGTTTGGGA 1015
Query 959 CGAGAGAAAAACGATACGAATCGGCTCGGTTTACCGATCGATTAATTATCGGTTATGGTG 1018
||| || ||| |||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct 1016 AGAGGGATAAAGGATACGAATCGGCTCGGTTTACTGATCGGTTAATTATCGGTTATAGTA 1075
Query 1019 ATGCTGTTCGGTTTTCTTCAGGTAGATTTTCGAATGTTGATCGGTTTAATTTCCCGGTTT 1078
|| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1076 ATCCTGTTCGGTTTTCTTCGGGTAGATTTTCGAATGTTGATCGGTTTAATTTTCCGGTTT 1135
Query 1079 CTGGT 1083
|||||
Sbjct 1136 CTGGT 1140
> AT4G40085.1 | Symbols: | other RNA | chr4:18579242-18580377
REVERSE LENGTH=887
Length=887
Score = 586 bits (317), Expect = 1e-166
Identities = 364/387 (94%), Gaps = 2/387 (1%)
Strand=Plus/Minus
Query 1 ATGGGAAGAATTACGAGTTTTGCAGATCTAATGGGTATG-ATCAAAGACAAAGCTTCTCA 59
||||||||||| || ||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct 758 ATGGGAAGAATAACAAGTTTTGCAGATCTAATAGGTA-GAATCAAAGACAAAGCTTCTCA 700
Query 60 AGGCAAAGCTGCTTTAGTTTCATCACACACTAAAAGCAAAACTGTTTCTTTCCATCTCTC 119
| |||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||
Sbjct 699 AAGCAAAGCTGCTTTAGTATCATCAAACACTAAAAGCAAAACTCTCTCTTTCCATCTCTC 640
Query 120 TGTCCTCCGTGCCACTACTCATGACCCTTCAACGCCGCCGGGAAATCGTCACCTCGCTGT 179
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 639 TGTCCTCCGTGCCACTACTCATGACCCTTCAACGCCGCCGGGGAATCGTCACCTCGCCGT 580
Query 180 TCTTCTCTCCGCCGGTACTGGCTCACGAGCCACCGCTGCTTCAGCTGTCGAATCTATAAT 239
| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 579 TATTCTCTCCGCCGGTACTGGCTCACGAGCCACCGCTTCTTCAGCTGTCGAATCCATAAT 520
Query 240 GGAACGTCTTCACACAAGCAGAGATGCTTGCGTAGCTCTCAAATCTTTGATCATTATCCA 299
||||||||||||||| | | |||||||||||||||||||||| |||||||||||||||||
Sbjct 519 GGAACGTCTTCACACCACCGGAGATGCTTGCGTAGCTCTCAAGTCTTTGATCATTATCCA 460
Query 300 TCACATCGTCAAACACGGTCGTTTCATACTCCAAGATCAGCTCTCTGTTTTTCCGGCTTC 359
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 459 TCACATCGTCAAACACGGTCGTTTCATCCTCCAAGATCAGCTCTCTGTATTTCCAGCTTC 400
Query 360 CGGTGGCCGGAATTATCTGAAACTTTC 386
|||||| ||||||||||||||||||||
Sbjct 399 CGGTGGTCGGAATTATCTGAAACTTTC 373
Score = 584 bits (316), Expect = 5e-166
Identities = 355/374 (95%), Gaps = 2/374 (1%)
Strand=Plus/Minus
Query 561 CAACGCTGACT-TGCTTCGTGAGATCGATGCGCTCGTTGGTCTACTAGAAGAAGCATGTA 619
|||| |||| | ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 373 CAACTCTGA-TCTGCTTCGTGAGATCGATGCTCTCGTTGGTCTACTAGAAGAAGCATGTA 315
Query 620 AAATTCCGGATCTACCCTTCTCCGGTGGCAAATCTCTTGCAGACAAAATCACCCATTTGG 679
|||||||||||||||||||||||||||| ||||| || |||||||||||||| || ||||
Sbjct 314 AAATTCCGGATCTACCCTTCTCCGGTGGGAAATCCCTCGCAGACAAAATCACTCAGTTGG 255
Query 680 TCGGAGAAGACTACGTGTCTTCGATCAACGAGCTTTACACGAGACTCAACGAGTTTAAAG 739
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 254 TAGGAGAAGACTACGTGTCTTCGATCAACGAGCTTTACACGAGATTCAACGAGTTTAAAG 195
Query 740 AACGATCCAACACTTTGAGCTTTGGAGATATGATTGAGCTTGTCTGTGCTTTGAAGCGGC 799
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 194 AACGATCCAACACTTTGAGCTTTGGAGATACGATCGAGCTTGTCTGTGCTTTGAAGCGGC 135
Query 800 TCGAGAGTTGTAAAGAGAGATTGTCTGAAATCTGCCATGGGAACTGGAAGAGAGGTTGGA 859
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 134 TCGAGAGTTGTAAAGAGAGGTTGTCTGAAATCTGCCATGGGAATTGGAAGAGAGGTTGGA 75
Query 860 TCGATGGGTTCTGGGGTTTGGTTCTGGAGGTCAAGGGTATAATTGGTAATTTAGAGGATA 919
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 74 TTGATGGGTTCTGGGGTTTGGTTCTTGAGGTCAAGGGTATTATTGGTAATTTAGAGGATA 15
Query 920 ACTATGGGCAGATT 933
| ||||||||||||
Sbjct 14 ATTATGGGCAGATT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53664382605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5