BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353023
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22475.1 | Symbols: GEM | GRAM domain family protein | chr2:... 785 0.0
AT4G40100.1 | Symbols: | GRAM domain family protein | chr4:185... 651 0.0
AT1G81020.1 | Symbols: | pseudogene, similar to Putative FH pr... 414 6e-115
> AT2G22475.1 | Symbols: GEM | GRAM domain family protein | chr2:9541401-9545010
FORWARD LENGTH=1254
Length=1254
Score = 785 bits (425), Expect = 0.0
Identities = 635/737 (86%), Gaps = 11/737 (1%)
Strand=Plus/Plus
Query 198 AGCACCGACTCGAACAGCGTCTGGATCGAGGAAATCGGTCCATTGGAATCCTGAATTGGT 257
||| |||| ||||||| |||||||||||| |||||| || ||||||| || ||||||||
Sbjct 293 AGCTCCGAGTCGAACATCGTCTGGATCGAAGAAATCTGTACATTGGAGCCCCGAATTGGT 352
Query 258 TTCTGAATCTCCGGCACCGGATCAGAAATCCT-TATCGTCGTCTTCCGCCGCGGGATCTA 316
|||| ||||| || ||||||||||||| || |||||| |||| || || |||||||
Sbjct 353 GTCTGGATCTCAGGAACCGGATCAGAAA-GCTGCATCGTCTTCTT-CG--GCTGGATCTA 408
Query 317 ATCCGTACGTCGCTCGTGCTCCTGCTGAAACTTCGGATGCCTCGTTGAAAGAAACGATGG 376
||||||| | |||||| |||| ||||| ||||| ||||| ||||||||||| |||||||
Sbjct 409 ATCCGTATATTGCTCGTTCTCCAGCTGAGACTTCAGATGCTTCGTTGAAAGATACGATGG 468
Query 377 AAACTGTGAAAGGTGTGCTTGGGAGATGGGGAAGGAGGGTTGGAGAAGCTGCAATGAAGG 436
| ||||||||||| |||||||| |||||||||| |||||||| |||||| |||| ||||
Sbjct 469 AGACTGTGAAAGGAGTGCTTGGTAGATGGGGAAAGAGGGTTGCAGAAGCAGCAAAGAAGA 528
Query 437 CGGAGAGCCTTGCCGGTAACACGTGGCAACACCTGAAAACTGCTCCGAGTTTTGCGGATG 496
|||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 529 CGGAGAGCCTTGCCGGGAACACATGGCAACACCTGAGAACTGCTCCGAGTTTTGCGGATG 588
Query 497 CTGCAATGGGAAGAATTGCACAGAGTACAAAGGT-TCTGGCAGAAGGAGGGTATGAGAAA 555
|||||||||||||||||||||||||||||||||| | || |||||||||| ||||||||
Sbjct 589 CTGCAATGGGAAGAATTGCACAGAGTACAAAGGTCTTTG-CAGAAGGAGGATATGAGAAG 647
Query 556 ATTTTCAGGCAAACCTTTGAAACAGTTCCAGAGGAGCAGCTGCAAAATTCATTTGCGTGC 615
|| ||| | ||||||||||| |||| ||| || || ||| ||| |||||| ||||| ||
Sbjct 648 ATATTCCGACAAACCTTTGAGACAGATCCCGAAGAACAGTTGCTAAATTCTTTTGCATGT 707
Query 616 TACTTGTCAACATCAGCTGGTCCAGTCATGGGAGTTCTTTACATATCCACTGCTAAACTT 675
|||||||||||||||||||| ||||| ||||||||||| || ||||||| ||| ||||||
Sbjct 708 TACTTGTCAACATCAGCTGGCCCAGTTATGGGAGTTCTATATATATCCAGTGCCAAACTT 767
Query 676 GCCTACTGTAGCGATAACCCTCTCTCGTATAAAAATTCTGGTCAAACTGAATGGAGCTAT 735
|| |||||||| || ||||||||||| |||||||| || |||||| ||||||||||||
Sbjct 768 GCTTACTGTAGTGACAACCCTCTCTCCTATAAAAACGGTGATCAAACCGAATGGAGCTAT 827
Query 736 TATAAGGTAGTAATTCCATTACATCAGCTTAAATCGGTTAACCCCTCGGCAAGCATAGTC 795
|| ||||||||||||||||||||||| |||||| | || || || || || |||||||||
Sbjct 828 TACAAGGTAGTAATTCCATTACATCAACTTAAAGCAGTGAATCCATCAGCGAGCATAGTC 887
Query 796 AATCCTGCAGAAAAGTACATCCAGGTAATCTCGGTCGACGACCATGAGTTTTGGTTCATG 855
||||||||||| |||||||| ||||| || ||||| ||| | ||||||||||||||||||
Sbjct 888 AATCCTGCAGAGAAGTACATACAGGTGATTTCGGTAGACAATCATGAGTTTTGGTTCATG 947
Query 856 GGTTTCTTAAACTACGAAGGCGCTGTTACAG-CTCTGCAAGATACATTGCAAGCCGGTGC 914
||||| ||||||||||| |||||||| || | ||||||||||| | ||||||||||||||
Sbjct 948 GGTTTTTTAAACTACGACGGCGCTGTCAC-GTCTCTGCAAGATTCTTTGCAAGCCGGTGC 1006
Query 915 CTTACAG-TCTGTGTGA 930
||| || || ||||||
Sbjct 1007 TTTA-AGGTCGGTGTGA 1022
> AT4G40100.1 | Symbols: | GRAM domain family protein | chr4:18583244-18584524
FORWARD LENGTH=678
Length=678
Score = 651 bits (352), Expect = 0.0
Identities = 452/497 (91%), Gaps = 20/497 (4%)
Strand=Plus/Plus
Query 161 CTACGCTACAAGTCGAAATCGAAACAAAAGGCGATCGAGCACCGACTCGAACAGCGTCTG 220
|||||||||| ||||||||||| ||||||||||||||||||||| ||||||| |||| |
Sbjct 10 CTACGCTACACGTCGAAATCGATTCAAAAGGCGATCGAGCACCGAATCGAACATCGTCCG 69
Query 221 GATCGAGGAAATCGGTCCATTGGAATCCTGAATTGGTTTCTGAATCTCCGGCACCGGATC 280
||||||| ||||| ||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 70 GATCGAGAAAATC--TCCATTGGAATCCCGAATTGGTTTCTGAATCTCCCGCACCGGATG 127
Query 281 AGAAATCCTTATCGTCGTCTTCCGCCGCGGGATCTAATCCGTACGTCGCTCGTGCTCCTG 340
|||| ||||||| || ||||| |||||| |||||||||||||||||||||||||||||
Sbjct 128 AGAAGGCCTTATCCTCATCTTCTGCCGCGAGATCTAATCCGTACGTCGCTCGTGCTCCTA 187
Query 341 CTGAAACTTCGGATGCCTCGTTGAAAGAAACGATGGAAACTGTGAAAGGTGTGCTTGGGA 400
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 188 CTGAAACTTCGGATGCCTCGTTGAAAGAAACGATGGAATCTGTGAAAGGTGTGCTTGGGA 247
Query 401 GATGGGGAAGGAGGGTTGGAGAAGCTGCAATGAAGGCGGAGAGCCTTGCCGGTAACACGT 460
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 248 GATGGGGAAGGAGGGTTGGAGAAGCTGCAATGAAGGCAGAGAGCCTTGCCGGGAACACGT 307
Query 461 GGCAACACCTGAAAACTGCTCCGAGTTTTGCGGATGCTGCAATGGGAAGAATTGCACAGA 520
||||||||| || | | ||| |||||||||||||||||||||||| |
Sbjct 308 GGCAACACC------CT--T-----T---GCG--TGCTGCAATGGGAAGAATTGCACAAA 349
Query 521 GTACAAAGGTTCTGGCAGAAGGAGGGTATGAGAAAATTTTCAGGCAAACCTTTGAAACAG 580
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 350 GTACAAAGGTTCTGGCAGAAGGAGGATATGAGAAAATTTTCAGGCAAACCTTTGAAACTG 409
Query 581 TTCCAGAGGAGCAGCTGCAAAATTCATTTGCGTGCTACTTGTCAACATCAGCTGGTCCAG 640
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 410 TTCCAGAGGAGCAACTGCAAAATTCATTTGCGTGCTACTTATCAACATCAGCTGGTCCAG 469
Query 641 TCATGGGAGTTCTTTAC 657
|||||||||||||||||
Sbjct 470 TCATGGGAGTTCTTTAC 486
Score = 292 bits (158), Expect = 3e-78
Identities = 179/189 (95%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 742 GTAGTAATTCCATTACATCAGCTTAAATCGGTTAACCCCTCGGCAAGCATAGTCAATCCT 801
|||||||| ||||||||||||||||||||||||||||| ||| ||||| ||| ||||||
Sbjct 487 GTAGTAATCCCATTACATCAGCTTAAATCGGTTAACCCTTCGATAAGCACAGTTAATCCT 546
Query 802 GCAGAAAAGTACATCCAGGTAATCTCGGTCGACGACCATGAGTTTTGGTTCATGGGTTTC 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GCAGAAAAGTACATCCAGGTAATCTCGGTCGACGACCATGAGTTTTGGTTCATGGGTTTC 606
Query 862 TTAAACTACGAAGGCGCTGTTACAGCTCTGCAAGATACATTGCAAGCCGGTGCCTTACAG 921
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||
Sbjct 607 TTAAACTACGAAGGCGCTGTTACATCTCTACAAGATACATTGCAAGCCGGTGCCT--CAG 664
Query 922 TCTGTGTGA 930
|||||||||
Sbjct 665 TCTGTGTGA 673
> AT1G81020.1 | Symbols: | pseudogene, similar to Putative FH
protein interacting protein FIP1, blastp match of 61% identity
and 2.3e-42 P-value to GP|24756872|gb|AAN64136.1||AC121489
Putative FH protein interacting protein FIP1 {Oryza sativa
(japonica cultivar-group)} | chr1:30426839-30427577 FORWARD
LENGTH=739
Length=739
Score = 414 bits (224), Expect = 6e-115
Identities = 257/273 (94%), Gaps = 2/273 (1%)
Strand=Plus/Plus
Query 470 TGAAAACTGCTCCGAGTTTTGCGGATGCTGCAATGGGAAGAATTGCACAGAGTACAAAGG 529
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGAAAACTGCTTCGAGTTTTGCGGATGCTGCAATGGGAAGAATTGCACAGAGTACAAAGG 179
Query 530 TTCTGGCAGAAGGAGGGTATGAGAAAATTTTCAGGCAAACCTTTGAAAC-AGTTCCAGAG 588
||||| || ||||||| ||||||||||||||||| |||||||||||||| | ||| ||||
Sbjct 180 TTCTGACAAAAGGAGGATATGAGAAAATTTTCAGACAAACCTTTGAAACTA-TTCTAGAG 238
Query 589 GAGCAGCTGCAAAATTCATTTGCGTGCTACTTGTCAACATCAGCTGGTCCAGTCATGGGA 648
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 239 GAGCAGCTGCAGAATTCATTTGCGTGCTACTTATCAACATCAGCTGGTCCAGTCATGGGA 298
Query 649 GTTCTTTACATATCCACTGCTAAACTTGCCTACTGTAGCGATAACCCTCTCTCGTATAAA 708
||||||||| |||||||| |||||||||| |||| |||||||||||||||||||| |||
Sbjct 299 GTTCTTTACGTATCCACTACTAAACTTGCTTACTCAAGCGATAACCCTCTCTCGTACAAA 358
Query 709 AATTCTGGTCAAACTGAATGGAGCTATTATAAG 741
|||||||||||||||||||||||||||||||||
Sbjct 359 AATTCTGGTCAAACTGAATGGAGCTATTATAAG 391
Score = 183 bits (99), Expect = 2e-45
Identities = 119/129 (92%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 742 GTAGTAATTCCATTACATCAGCTTAAATCGGTTAACCCCTCGGCAAGCATAGTCAATCCT 801
|||||||| ||||||||||||||||||||||||||||| || ||| || ||||||||||
Sbjct 564 GTAGTAATCCCATTACATCAGCTTAAATCGGTTAACCCTTCTACAAACACAGTCAATCCT 623
Query 802 GCAGAAAAGTACATCCAGGTAATCTCGGTCGACGACCATGAGTTTTGGTTCATGGGTTTC 861
||||||| |||||||||| ||||||| ||||||||||||||||||||||||||| |||||
Sbjct 624 GCAGAAAGGTACATCCAGATAATCTCAGTCGACGACCATGAGTTTTGGTTCATGTGTTTC 683
Query 862 TTAAACTAC 870
|||||||||
Sbjct 684 TTAAACTAC 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5