BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg353023 Length=930 Score E Sequences producing significant alignments: (Bits) Value AT2G22475.1 | Symbols: GEM | GRAM domain family protein | chr2:... 785 0.0 AT4G40100.1 | Symbols: | GRAM domain family protein | chr4:185... 651 0.0 AT1G81020.1 | Symbols: | pseudogene, similar to Putative FH pr... 414 6e-115 > AT2G22475.1 | Symbols: GEM | GRAM domain family protein | chr2:9541401-9545010 FORWARD LENGTH=1254 Length=1254 Score = 785 bits (425), Expect = 0.0 Identities = 635/737 (86%), Gaps = 11/737 (1%) Strand=Plus/Plus Query 198 AGCACCGACTCGAACAGCGTCTGGATCGAGGAAATCGGTCCATTGGAATCCTGAATTGGT 257 ||| |||| ||||||| |||||||||||| |||||| || ||||||| || |||||||| Sbjct 293 AGCTCCGAGTCGAACATCGTCTGGATCGAAGAAATCTGTACATTGGAGCCCCGAATTGGT 352 Query 258 TTCTGAATCTCCGGCACCGGATCAGAAATCCT-TATCGTCGTCTTCCGCCGCGGGATCTA 316 |||| ||||| || ||||||||||||| || |||||| |||| || || ||||||| Sbjct 353 GTCTGGATCTCAGGAACCGGATCAGAAA-GCTGCATCGTCTTCTT-CG--GCTGGATCTA 408 Query 317 ATCCGTACGTCGCTCGTGCTCCTGCTGAAACTTCGGATGCCTCGTTGAAAGAAACGATGG 376 ||||||| | |||||| |||| ||||| ||||| ||||| ||||||||||| ||||||| Sbjct 409 ATCCGTATATTGCTCGTTCTCCAGCTGAGACTTCAGATGCTTCGTTGAAAGATACGATGG 468 Query 377 AAACTGTGAAAGGTGTGCTTGGGAGATGGGGAAGGAGGGTTGGAGAAGCTGCAATGAAGG 436 | ||||||||||| |||||||| |||||||||| |||||||| |||||| |||| |||| Sbjct 469 AGACTGTGAAAGGAGTGCTTGGTAGATGGGGAAAGAGGGTTGCAGAAGCAGCAAAGAAGA 528 Query 437 CGGAGAGCCTTGCCGGTAACACGTGGCAACACCTGAAAACTGCTCCGAGTTTTGCGGATG 496 |||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 529 CGGAGAGCCTTGCCGGGAACACATGGCAACACCTGAGAACTGCTCCGAGTTTTGCGGATG 588 Query 497 CTGCAATGGGAAGAATTGCACAGAGTACAAAGGT-TCTGGCAGAAGGAGGGTATGAGAAA 555 |||||||||||||||||||||||||||||||||| | || |||||||||| |||||||| Sbjct 589 CTGCAATGGGAAGAATTGCACAGAGTACAAAGGTCTTTG-CAGAAGGAGGATATGAGAAG 647 Query 556 ATTTTCAGGCAAACCTTTGAAACAGTTCCAGAGGAGCAGCTGCAAAATTCATTTGCGTGC 615 || ||| | ||||||||||| |||| ||| || || ||| ||| |||||| ||||| || Sbjct 648 ATATTCCGACAAACCTTTGAGACAGATCCCGAAGAACAGTTGCTAAATTCTTTTGCATGT 707 Query 616 TACTTGTCAACATCAGCTGGTCCAGTCATGGGAGTTCTTTACATATCCACTGCTAAACTT 675 |||||||||||||||||||| ||||| ||||||||||| || ||||||| ||| |||||| Sbjct 708 TACTTGTCAACATCAGCTGGCCCAGTTATGGGAGTTCTATATATATCCAGTGCCAAACTT 767 Query 676 GCCTACTGTAGCGATAACCCTCTCTCGTATAAAAATTCTGGTCAAACTGAATGGAGCTAT 735 || |||||||| || ||||||||||| |||||||| || |||||| |||||||||||| Sbjct 768 GCTTACTGTAGTGACAACCCTCTCTCCTATAAAAACGGTGATCAAACCGAATGGAGCTAT 827 Query 736 TATAAGGTAGTAATTCCATTACATCAGCTTAAATCGGTTAACCCCTCGGCAAGCATAGTC 795 || ||||||||||||||||||||||| |||||| | || || || || || ||||||||| Sbjct 828 TACAAGGTAGTAATTCCATTACATCAACTTAAAGCAGTGAATCCATCAGCGAGCATAGTC 887 Query 796 AATCCTGCAGAAAAGTACATCCAGGTAATCTCGGTCGACGACCATGAGTTTTGGTTCATG 855 ||||||||||| |||||||| ||||| || ||||| ||| | |||||||||||||||||| Sbjct 888 AATCCTGCAGAGAAGTACATACAGGTGATTTCGGTAGACAATCATGAGTTTTGGTTCATG 947 Query 856 GGTTTCTTAAACTACGAAGGCGCTGTTACAG-CTCTGCAAGATACATTGCAAGCCGGTGC 914 ||||| ||||||||||| |||||||| || | ||||||||||| | |||||||||||||| Sbjct 948 GGTTTTTTAAACTACGACGGCGCTGTCAC-GTCTCTGCAAGATTCTTTGCAAGCCGGTGC 1006 Query 915 CTTACAG-TCTGTGTGA 930 ||| || || |||||| Sbjct 1007 TTTA-AGGTCGGTGTGA 1022 > AT4G40100.1 | Symbols: | GRAM domain family protein | chr4:18583244-18584524 FORWARD LENGTH=678 Length=678 Score = 651 bits (352), Expect = 0.0 Identities = 452/497 (91%), Gaps = 20/497 (4%) Strand=Plus/Plus Query 161 CTACGCTACAAGTCGAAATCGAAACAAAAGGCGATCGAGCACCGACTCGAACAGCGTCTG 220 |||||||||| ||||||||||| ||||||||||||||||||||| ||||||| |||| | Sbjct 10 CTACGCTACACGTCGAAATCGATTCAAAAGGCGATCGAGCACCGAATCGAACATCGTCCG 69 Query 221 GATCGAGGAAATCGGTCCATTGGAATCCTGAATTGGTTTCTGAATCTCCGGCACCGGATC 280 ||||||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 70 GATCGAGAAAATC--TCCATTGGAATCCCGAATTGGTTTCTGAATCTCCCGCACCGGATG 127 Query 281 AGAAATCCTTATCGTCGTCTTCCGCCGCGGGATCTAATCCGTACGTCGCTCGTGCTCCTG 340 |||| ||||||| || ||||| |||||| ||||||||||||||||||||||||||||| Sbjct 128 AGAAGGCCTTATCCTCATCTTCTGCCGCGAGATCTAATCCGTACGTCGCTCGTGCTCCTA 187 Query 341 CTGAAACTTCGGATGCCTCGTTGAAAGAAACGATGGAAACTGTGAAAGGTGTGCTTGGGA 400 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 188 CTGAAACTTCGGATGCCTCGTTGAAAGAAACGATGGAATCTGTGAAAGGTGTGCTTGGGA 247 Query 401 GATGGGGAAGGAGGGTTGGAGAAGCTGCAATGAAGGCGGAGAGCCTTGCCGGTAACACGT 460 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 248 GATGGGGAAGGAGGGTTGGAGAAGCTGCAATGAAGGCAGAGAGCCTTGCCGGGAACACGT 307 Query 461 GGCAACACCTGAAAACTGCTCCGAGTTTTGCGGATGCTGCAATGGGAAGAATTGCACAGA 520 ||||||||| || | | ||| |||||||||||||||||||||||| | Sbjct 308 GGCAACACC------CT--T-----T---GCG--TGCTGCAATGGGAAGAATTGCACAAA 349 Query 521 GTACAAAGGTTCTGGCAGAAGGAGGGTATGAGAAAATTTTCAGGCAAACCTTTGAAACAG 580 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 350 GTACAAAGGTTCTGGCAGAAGGAGGATATGAGAAAATTTTCAGGCAAACCTTTGAAACTG 409 Query 581 TTCCAGAGGAGCAGCTGCAAAATTCATTTGCGTGCTACTTGTCAACATCAGCTGGTCCAG 640 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 410 TTCCAGAGGAGCAACTGCAAAATTCATTTGCGTGCTACTTATCAACATCAGCTGGTCCAG 469 Query 641 TCATGGGAGTTCTTTAC 657 ||||||||||||||||| Sbjct 470 TCATGGGAGTTCTTTAC 486 Score = 292 bits (158), Expect = 3e-78 Identities = 179/189 (95%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 742 GTAGTAATTCCATTACATCAGCTTAAATCGGTTAACCCCTCGGCAAGCATAGTCAATCCT 801 |||||||| ||||||||||||||||||||||||||||| ||| ||||| ||| |||||| Sbjct 487 GTAGTAATCCCATTACATCAGCTTAAATCGGTTAACCCTTCGATAAGCACAGTTAATCCT 546 Query 802 GCAGAAAAGTACATCCAGGTAATCTCGGTCGACGACCATGAGTTTTGGTTCATGGGTTTC 861 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 547 GCAGAAAAGTACATCCAGGTAATCTCGGTCGACGACCATGAGTTTTGGTTCATGGGTTTC 606 Query 862 TTAAACTACGAAGGCGCTGTTACAGCTCTGCAAGATACATTGCAAGCCGGTGCCTTACAG 921 |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| Sbjct 607 TTAAACTACGAAGGCGCTGTTACATCTCTACAAGATACATTGCAAGCCGGTGCCT--CAG 664 Query 922 TCTGTGTGA 930 ||||||||| Sbjct 665 TCTGTGTGA 673 > AT1G81020.1 | Symbols: | pseudogene, similar to Putative FH protein interacting protein FIP1, blastp match of 61% identity and 2.3e-42 P-value to GP|24756872|gb|AAN64136.1||AC121489 Putative FH protein interacting protein FIP1 {Oryza sativa (japonica cultivar-group)} | chr1:30426839-30427577 FORWARD LENGTH=739 Length=739 Score = 414 bits (224), Expect = 6e-115 Identities = 257/273 (94%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 470 TGAAAACTGCTCCGAGTTTTGCGGATGCTGCAATGGGAAGAATTGCACAGAGTACAAAGG 529 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TGAAAACTGCTTCGAGTTTTGCGGATGCTGCAATGGGAAGAATTGCACAGAGTACAAAGG 179 Query 530 TTCTGGCAGAAGGAGGGTATGAGAAAATTTTCAGGCAAACCTTTGAAAC-AGTTCCAGAG 588 ||||| || ||||||| ||||||||||||||||| |||||||||||||| | ||| |||| Sbjct 180 TTCTGACAAAAGGAGGATATGAGAAAATTTTCAGACAAACCTTTGAAACTA-TTCTAGAG 238 Query 589 GAGCAGCTGCAAAATTCATTTGCGTGCTACTTGTCAACATCAGCTGGTCCAGTCATGGGA 648 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 239 GAGCAGCTGCAGAATTCATTTGCGTGCTACTTATCAACATCAGCTGGTCCAGTCATGGGA 298 Query 649 GTTCTTTACATATCCACTGCTAAACTTGCCTACTGTAGCGATAACCCTCTCTCGTATAAA 708 ||||||||| |||||||| |||||||||| |||| |||||||||||||||||||| ||| Sbjct 299 GTTCTTTACGTATCCACTACTAAACTTGCTTACTCAAGCGATAACCCTCTCTCGTACAAA 358 Query 709 AATTCTGGTCAAACTGAATGGAGCTATTATAAG 741 ||||||||||||||||||||||||||||||||| Sbjct 359 AATTCTGGTCAAACTGAATGGAGCTATTATAAG 391 Score = 183 bits (99), Expect = 2e-45 Identities = 119/129 (92%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 742 GTAGTAATTCCATTACATCAGCTTAAATCGGTTAACCCCTCGGCAAGCATAGTCAATCCT 801 |||||||| ||||||||||||||||||||||||||||| || ||| || |||||||||| Sbjct 564 GTAGTAATCCCATTACATCAGCTTAAATCGGTTAACCCTTCTACAAACACAGTCAATCCT 623 Query 802 GCAGAAAAGTACATCCAGGTAATCTCGGTCGACGACCATGAGTTTTGGTTCATGGGTTTC 861 ||||||| |||||||||| ||||||| ||||||||||||||||||||||||||| ||||| Sbjct 624 GCAGAAAGGTACATCCAGATAATCTCAGTCGACGACCATGAGTTTTGGTTCATGTGTTTC 683 Query 862 TTAAACTAC 870 ||||||||| Sbjct 684 TTAAACTAC 692 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45461903035 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5