BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353031
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38070.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 593 5e-169
> AT4G38070.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:17876535-17882569 FORWARD
LENGTH=4542
Length=4542
Score = 593 bits (321), Expect = 5e-169
Identities = 464/527 (88%), Gaps = 34/527 (6%)
Strand=Plus/Plus
Query 97 GAGAAGGTACTTCGCACAACCGCACATC-CCTCGAC--AAGAGACCGATCGAAACGTGCC 153
|||||||| ||||||| ||||||||| | || |||| || | |||||||||||||||||
Sbjct 3125 GAGAAGGTGCTTCGCAGAACCGCACAGCACC-CGACTTAA-A-ACCGATCGAAACGTGCC 3181
Query 154 ATAAAGAT--T---ATCAGCGTTCG-GTATATCAGCGTTCGGTATATCATTCAAATGAAT 207
|||| | | |||| || | | || | ||||||||||||||||||||||| |||||
Sbjct 3182 GTAAA-CTCCTCAAATCA-CG-T-GAGTTTCTCAGCGTTCGGTATATCATTCAAGTGAAT 3237
Query 208 CAGTTGGTAAGAAGTAAACGG--T-ATGATGATGATCAGTTTGAGCAAGTGGAAGCCATC 264
||| || ||| |||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 3238 CAGCTGCTAAAAAGTAAACGGCATGATGATGATGATCAGTTTGAGCAAGTGGAAGCCATC 3297
Query 265 TGCGACGTTCTCATCGCCGCAGAGAACCGGCTTCCAAACGGGTTAAAGGATTATTACGGC 324
|||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 3298 TGCGACCTTCTCATCGCCGCAGAAAACCGGCTTCCAAACGGTTTAAAGGATTATTACGGC 3357
Query 325 ATGATTAGGGCGAACCGATTCGGACCGGTTTTATTGGAGGACTTCGAGAAATTGATGAAG 384
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 3358 ATGATTCGGGCGAACCGATTCGGACCAGTTTTATTGGAGGACTTCGAGAAATTGACGAAA 3417
Query 385 CTTCTTGATAAGACGCATAACCATTTCCCATTTAGCCAAGAAGCTGCTGATAAAGCCTCG 444
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3418 CTTCTTGATAAGAAGCATAACTATTTCCCATTTAGCCAAGAAGCTGCTGATAAAGCCTCG 3477
Query 445 CTAGCTTGGTCTTTGCTGTCTAAGCCACCCATCAAGGCCCATTACGATCTCGCTATCTTC 504
|||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||| |
Sbjct 3478 CTAGCTTGGTCTCTGCTGTCTAAGCCACCCATCAAAGCCCATTACGATCTTGCTATCTCC 3537
Query 505 GCATTTTGCGGAGAGTGTAGCAAAGGAAAACGAAAGATGGGTTTTCATGAATCCTTTATC 564
||||||| ||||||||||||||||| |||||||||||| | | | | |||
Sbjct 3538 GCATTTTTCGGAGAGTGTAGCAAAGTAAAACGAAAGAT-------C-T---T--T--ATC 3582
Query 565 CCCAAGAAACAAATTGAGGTGGTGGTTATTTCTGATGACGATGACGA 611
|||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 3583 CCCAAGAAACAAATTGAGGTAGTGGTTATTTCCGATGACGACGACGA 3629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5