BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353036
Length=2001
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38030.1 | Symbols: | Rhamnogalacturonate lyase family prot... 3249 0.0
AT1G65210.1 | Symbols: | Galactose-binding protein | chr1:2422... 647 0.0
> AT4G38030.1 | Symbols: | Rhamnogalacturonate lyase family protein
| chr4:17863073-17866730 REVERSE LENGTH=2137
Length=2137
Score = 3249 bits (1759), Expect = 0.0
Identities = 1927/2008 (96%), Gaps = 11/2008 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTTGCAGAAGAAGATAGCTTCGTTAATTATTTGTTTCCTTCTGTTGCTTCTTCTT 60
||||| | |||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGTATCGCAGAAGAAGATCGCTTCGTTATTTATTTGTTTCCTTCTGTTGCTTCTTCTT 60
Query 61 CCACTCTCCTTTTCTAAGCCGACAAGAAACTTAGATGGAATAAGTGCAAGAGCTCCAACA 120
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CCACTCTCCTTTTCCAAGCCGACAAGGAACTTAGATGGAATAAGTGCAAGAGCTCCAACA 120
Query 121 GTGCAGCAGATAAGAAACAGACATCATGGGACTAGAGAGGTGATAGTGGACAATGGGATT 180
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGCAGCAGATAAGAAGCAGACATCATGGGACTAGAGAGGTGATAGTGGACAATGGGATA 180
Query 181 ATCAGAGTCAGTTTCTCGAATCCTCAAGGACTTGTAACTGGGATCAAATACAAAGGAATT 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 ATCAGAGTCAGTTTCTCGAATCCTCAAGGACTTATAACTGGGATCAAATACAAAGGAATT 240
Query 241 GATAATGTTCTTCATCCACATCTCCGAGCTCGAGGGTACTGGGACATAACATGGCAAGGA 300
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 241 GATAATGTTCTTCATCCACATCTCCGAGATAGAGGGTACTGGGACATAACATGGCAAGGA 300
Query 301 ACAAACATTCGTCAGGGCGGCTTAGATCGAATCGAAGGAACCAAA-TTTAGAATCATCAC 359
||||||||||| || ||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 301 ACAAACATTCGCCAAGGCGGCTTAGATCGAATCGAAGGAA-CAAATTTTAGAATCATCAC 359
Query 360 TCAAACCCAAGAACAAGTGGAGATATCGTTCTCTAGAACATGGGAGGATGGTCATATTCC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCAAACCCAAGAACAAGTGGAGATATCGTTCTCTAGAACATGGGAGGATGGTCATATTCC 419
Query 420 ATTAAACGTAGACAAGAGGTATATTATACGTAGAAATACTTCAGGAATCTACATGTACGG 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 ATTAAACGTAGACAAGAGGTATATCATACGTAGAAATACTTCAGGAATCTACATGTACGG 479
Query 480 AATCTTCGAGAGACTTCCCGAATGGCCAGAACTCGACATGGGTTTAATCCGAATCGCTTT 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 AATCTTCGAGAGACTTCCCGAATGGCCAGAACTCGACATGGGTTTAATTCGAATCGCTTT 539
Query 540 CAAACTCAACCCTGACAGATTTCATTACATGGCGGTGGCGGATAATCGACAAAGAGAAAT 599
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAAACTCAACCCTGAGAGATTTCATTACATGGCGGTGGCGGATAATCGACAAAGAGAAAT 599
Query 600 GCCAACGGAAGATGACCGTGACATCGAACGTGGTCATGCCAAGGTTCTTGGTTATAAAGA 659
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 600 GCCAACGGAAGATGACCGTGACATCAAACGTGGTCATGCCAAGGCTCTTGGTTATAAAGA 659
Query 660 GGCTGTACAATTGACTCATCCTCATAACTCCATGTTCAAAAACCAGGTGGATGATAAGTA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGCTGTACAATTGACTCATCCTCATAACTCCATGTTCAAAAACCAGGTGGATGATAAGTA 719
Query 720 CCAGTACACATGTGAGATCAAAGACAACAAAGTGCACGGTTGGATCTCAACTAAGTCCCG 779
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 CCAGTACACATGTGAGATCAAAGACAACAAAGTGCACGGTTGGATCTCAACCAAGTCCCG 779
Query 780 TGTCGGCTTTTGGATCATCTCACCAAGCGGTGAATATCGCTCTGGTGGACCAATCAAACA 839
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 780 TGTCGGCTTTTGGATCATCTCACCAAGCGGTGAATATCGCTCCGGTGGACCGATCAAACA 839
Query 840 GGAGCTCACGTCTCACGTCGGTCCCACGGCCATCACGACTTTTATAAGTGGACATTATGT 899
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 840 AGAGCTCACGTCTCACGTCGGACCCACGGCCATCACGACTTTTATAAGCGGACATTATGT 899
Query 900 TGGTGCGGACATGGAGGCACATTACCGACCTGGTGAAGCATGGAAAAAGGTCTTGGGACC 959
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 900 TGGTGCGGACATGGAGGCACATTACAGACCTGGTGAAGCGTGGAAAAAGGTCTTGGGACC 959
Query 960 TGTTTTTATTTACTTAAACTCTGATTCTACCGGCAACAATCCTCCTCAAGATTTGTTATG 1019
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 960 TGTTTTTATTTACTTAAACTCTGATTCTACCAGCAACAATAAGCCTCAAGATTTGTTATG 1019
Query 1020 GGAAGATGCTAAACAACAGACCGAAAAAGAAGTCAAAGCATGGCCGTACGAATTTGTAGC 1079
||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1020 GGAAGATGCTAAACAACAGTCCGAAAAAGAAGTCAAAGCCTGGCCGTACGATTTTGTAGC 1079
Query 1080 ATCCTCTGACTTTCTTTCTCGTCGAGAAAGAGGAATCGTCACCGGTCGTCT-CTTAGTCA 1138
||||||||||| ||||||||||||||||||||||| |||||| |||||||| || |||||
Sbjct 1080 ATCCTCTGACTATCTTTCTCGTCGAGAAAGAGGAAGCGTCACTGGTCGTCTACT-AGTCA 1138
Query 1139 ACGACAGATTCTTGACGCCGGGAAAATCTGCTTATGTCGGTTTAGCACCGCCGGGAGAAG 1198
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1139 ACGACAGATTCTTGACGCCGGGAAAATCTGCATATGTCGGTTTAGCACCGCCGGGAGAAG 1198
Query 1199 CTGGTTCGTGGCAGACAAATACTAAGGGATATCAGTTTTGGACCAAGACAAACGAAACCG 1258
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1199 CTGGTTCGTGGCAGACAAATACTAAGGGATATCAGTTTTGGACCAAGACGAACGAAACCG 1258
Query 1259 GTTATTTCACGATAGAAAACGTTAGACCGGGAACTTACAATCTGTATGGGTGGGTTCCTG 1318
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1259 GTTACTTCACGATAGAAAACGTTAGACCGGGAACTTACAATCTGTATGGATGGGTTCCTG 1318
Query 1319 GTTTTATCGGAGACTTTCGATACCAAAACCGTGTTAACGTAGCTGCAGGTTCACAT-ATT 1377
|||||||||| ||||||||||||||||||| |||||||||||||||||||||| | |||
Sbjct 1319 GTTTTATCGGGGACTTTCGATACCAAAACCTTGTTAACGTAGCTGCAGGTTCAG-TGATT 1377
Query 1378 ACTCTTGGTAGAGTCGTGTACCAGCCACCTAGGAATGGTCCAACGCTATGGGAGATTGGT 1437
| ||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||
Sbjct 1378 AGTCTCGGTAGAGTCGTGTACAAGCCACCTAGGAACGGTCCAACGTTATGGGAGATTGGT 1437
Query 1438 GTACCGGATCGAACCGCCCAAGAATACTTTATACCGGAGCCATACAAGAATACAATGAAT 1497
||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct 1438 GTACCGGATCGAACCGCTCGAGAATACTTTATACCGGAGCCATACAAGGATACAATGAAT 1497
Query 1498 CC-TTA--CCTAAACCACACTGACAAGTTTAGACAGTACGGATTGTGGCAACGATACACA 1554
|| ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1498 CCGTTATACCTAAACCACACCGACAAGTTTAGACAGTACGGACTGTGGCAACGATACACA 1557
Query 1555 GAGTTATATCCAACTCATGATCTCGTCTACACAGTTGGAGCTAGTAACTATAGCCAAGAC 1614
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1558 GAGTTATATCCAACTCATGATCTCGTCTACACAGTTGGAGTTAGTAACTATAGCCAAGAC 1617
Query 1615 TGGTTCTACGCCCAAGTCACAAGGAAAACCGGTGATTTAACGTACGTGCCAACAACATGG 1674
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1618 TGGTTCTACGCCCAAGTCACAAGGAAAACCGGTGATTTAACGTACGTACCAACAATATGG 1677
Query 1675 CAGATCGTGTTTCACCTTCCATACGTAAACTGGCAAGGCGGCTACACATTGCAGCTAGCT 1734
|||||||||||||| |||||||||||||||| || |||| |||||||||||||| |||||
Sbjct 1678 CAGATCGTGTTTCATCTTCCATACGTAAACTCGCGAGGCAGCTACACATTGCAGGTAGCT 1737
Query 1735 TTAGCCTCGGCTGCACGGGCTAATCTACAAGTTCGGATCAATACCCAAAACTCTTGGCCG 1794
||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1738 TTAGCCTCGGCTGCATGGGCTAATCTACAAGTTCGGATCAATAACCAAAACTCGTGGCCG 1797
Query 1795 TTTTTCTCAACGGGTAATATTGGAAAAGACAATGCTATAGCAAGACATGGAATCCATGGA 1854
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1798 TTTTTCTCAACGGGTACTATCGGAAAAGACAATGCTATAGCAAGACATGGAATCCATGGA 1857
Query 1855 ATGTACCGGCTTTATAGCATCAATGTGCCTGGAAGGTTGCTAAGAACCGGGACCAACACG 1914
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1858 ATGTACCGGCTTTATACCATCGATGTGCCTGGAAGGTTGCTAAGAACCGGGACCAACACG 1917
Query 1915 ATTTATCTTCGACAGGCTAAAGCAACA-GGACCATTTGAAGGTCTTATGTATGATTACAT 1973
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1918 ATTTATCTTCGACAGCCTAAAGCA-CAAGGACCATTTGAAGGTCTTATGTATGATTACAT 1976
Query 1974 TCGTCTAGAAGAGCCTTCTAGAGATTAG 2001
||||||||||||||||||||||| ||||
Sbjct 1977 TCGTCTAGAAGAGCCTTCTAGAGCTTAG 2004
> AT1G65210.1 | Symbols: | Galactose-binding protein | chr1:24224812-24225815
FORWARD LENGTH=747
Length=747
Score = 647 bits (350), Expect = 0.0
Identities = 487/552 (88%), Gaps = 13/552 (2%)
Strand=Plus/Plus
Query 1458 AGAATACTTTATACCGGAGCCATACAAGAATACAATGAATCC--T-TACCTAAACCACAC 1514
|||||||||| ||||||||||||||||||| |||||||| || | || |||||||||||
Sbjct 201 AGAATACTTTGTACCGGAGCCATACAAGAACACAATGAACCCTTTATATCTAAACCACAC 260
Query 1515 TGACAAGTTTAGACAGTACGGATTGTGGCAACGATACACAGAGTTATATCC-AACTCATG 1573
||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 261 GGACAAGTTTAGGCAGTACGGATTATGGCAACGATACACAGAGTTATATCCAAAC-CATG 319
Query 1574 ATCTCGTCTACACAGTTGGAGCTAGTAACTATAGCCAAGACTGGTTCTACGCCCAAGTCA 1633
| ||| |||||||| |||||| ||||||||||||| |||||||||||||| | |||||||
Sbjct 320 ACCTCATCTACACAATTGGAGTTAGTAACTATAGCAAAGACTGGTTCTACTCTCAAGTCA 379
Query 1634 CAAGGAAAACCGGTGATTTAACGTACGTGCCAACAACATGGCAGATC-GTGTTTCACCTT 1692
|||| |||| |||||||| ||||||| ||||| |||||||||| | |||||||| |||
Sbjct 380 CAAGAAAAATCGGTGATTCAACGTACACACCAACTACATGGCAGA-CTGTGTTTCATCTT 438
Query 1693 CCATACGTAAAC-TGGCAAGGCGGCTACACATTGCAGCTAGCTTTAGCCTCGGCTGCACG 1751
||||| |||||| | || ||| ||||||||||||||||||||||||||||||||||| |
Sbjct 439 CCATATGTAAACAT-GCGAGGTAGCTACACATTGCAGCTAGCTTTAGCCTCGGCTGCATG 497
Query 1752 GGCTAATCTACAAGTTCGGATCAATACCCAAAACTCTTGGCCGTTTTTCTCAACGGG-TA 1810
||||||||||||||| || |||||| | || || | |||| |||||||||||||| ||
Sbjct 498 GGCTAATCTACAAGTACGTTTCAATAACGAATACACGAGGCCATTTTTCTCAACGGGATA 557
Query 1811 ATATTGGAAAAGACAATGCTATAGCAAGACATGGAATCCATGGAATGTACCGGCTTTATA 1870
|||||||| ||| |||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 558 -TATTGGAAGAGATAATGCTATAGCAAGACATGGAATCCATGGACTCTATCGGCTTTATA 616
Query 1871 GCATCAATGTGCCTGGAAGGTTGCTAAGAACCGGGA-CCAACACGATTTATCTTCGACAG 1929
|||||||||| ||||||||||||||| | || |||| ||||||||||||||||||||||
Sbjct 617 GCATCAATGTACCTGGAAGGTTGCTACGCAC-GGGAACCAACACGATTTATCTTCGACAA 675
Query 1930 GCTAAAGCAACAGGACCATTTGAAGGTCTTATGTATGATTACATTCGTCTAGAAGAGCCT 1989
||||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||
Sbjct 676 GCTAAAGCATCAGGACCACTTGAAGGAGTTATGTATGATTACATTCGTCTCGAAGAGCCT 735
Query 1990 TCTAGAGATTAG 2001
|||||||| |||
Sbjct 736 TCTAGAGAATAG 747
Score = 231 bits (125), Expect = 1e-59
Identities = 175/199 (88%), Gaps = 3/199 (2%)
Strand=Plus/Plus
Query 76 AAGCCGACAAGAAACTTAGATGGAATAAGTGCAAGAGCTCCAACAGTGCAGCAGATAAGA 135
||||||| |||||||||||||||| ||||| |||||||||||| || || || ||||||
Sbjct 7 AAGCCGATAAGAAACTTAGATGGACCAAGTGGAAGAGCTCCAACTGTTCAACAAATAAGA 66
Query 136 AACAGACATCATGGGACTAGAGAGGTGATAGTGGACAATGGGATTATCAGAGTCAGTTTC 195
|||| | | ||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 67 AACA-A-A-CATGGGACTAGAGAGGTGATAGTGGACAACGGGATTATTAGTGTCAGTTTC 123
Query 196 TCGAATCCTCAAGGACTTGTAACTGGGATCAAATACAAAGGAATTGATAATGTTCTTCAT 255
|||| ||| ||||||||| ||||||| ||||||||||||||| | |||||||||| |||
Sbjct 124 TCGAGTCCCCAAGGACTTATAACTGGCATCAAATACAAAGGAGTCAATAATGTTCTCCAT 183
Query 256 CCACATCTCCGAGCTCGAG 274
||||||| ||||||||||
Sbjct 184 CCACATCAACGAGCTCGAG 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99146076375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5