BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353047
Length=2364
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37900.1 | Symbols: | Protein of unknown function (duplicat... 3779 0.0
AT1G78030.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 128 2e-28
> AT4G37900.1 | Symbols: | Protein of unknown function (duplicated
DUF1399) | chr4:17821737-17824627 REVERSE LENGTH=2428
Length=2428
Score = 3779 bits (2046), Expect = 0.0
Identities = 2261/2367 (96%), Gaps = 6/2367 (0%)
Strand=Plus/Plus
Query 1 ATGGACAAGGAAAAGGAGCAAACTTTGGAGTGGAACGAAGCTCAGAAGATAGAGATAAGC 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 65 ATGGACAAGGAAAAGGAGCAAACTTTGGAGTGGAACGAAGCACAGAAGATAGATATAAGC 124
Query 61 GTTGACCTCTTT-GCTGCAGCCAAAAAACAGCTTCTCTTCCTCGGAGCTGTTGATCGGAA 119
|||||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 125 GTTGACCT-TTTGGCTGCAGCCAAGAAACACCTTCTCTTCCTCGGAGCTGTTGATCGGAA 183
Query 120 CCGTTGTCTCTACGATGGCCCTGCACTCGACAGAGCCATCTACAGATACAATGCTTATTG 179
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 184 CCGTTGTCTCTACGATGGCCCTGCACTCCAAAGAGCCATCTACAGATACAATGCTTATTG 243
Query 180 GCTTCCCTTGCTTGCTAAATACACCGAGTCTTCTTCGATCTGTGAAGGACCATTAGTCCC 239
|||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 244 GCTTCCCTTGCTTGCTCAATACACCGAGTCTTCTTCTATCTGTCAAGGACCATTAGTCCC 303
Query 240 TCCTCTTGACTGTGAATGGGTTTGGCATTGCCACAGGCTTACTCCGGTGAGGTATAAGAC 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 304 TCCTCTTGACTGTGAATGGGTTTGGCATTGCCACAGGCTTAATCCGGTGAGGTATAAGAC 363
Query 300 TGATTGTGAGCAATTCTATGGGAGAGTTCTTGACAATTCTGGCGTTATATCTTCCGTGAA 359
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||
Sbjct 364 TGATTGTGAGCAATTCTATGGGAGAGTTCTGGACAATTCTGGCGTTGTATCTTCCGTAAA 423
Query 360 TGGAAACTACAAATCACAAACTGAGACTCTATGGAGAAGATTGTATCCTATGGAGCCTTA 419
|||||||| ||||||||||||||| |||||||||| |||||||||||||| |||||||||
Sbjct 424 TGGAAACTGCAAATCACAAACTGAAACTCTATGGAAAAGATTGTATCCTACGGAGCCTTA 483
Query 420 TGACCTTGATTTTGGCAAGGCAATCTCAGAGCCAGCAGATATCTCAGCTCTTGAGAAATG 479
|||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 484 TGACCTTGATTTTGCCAATGCAATCTCAGAGCCAGCAGATGTCTCAGCTCTTGAGAAATG 543
Query 480 TACCACTTATGATCTTGTTTCAGCTGTCAAGAGACAAAGCCCGTTTTACTACCAGATTTC 539
|||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| ||||
Sbjct 544 TACCACTTATGATCTTGTTTTAGCTGTCAAGAGACAAAGCCCATTTTTCTACCAGGTTTC 603
Query 540 AAGAGCTCATGTAGATAATGATGTCTTTCTACAAGAAGCTGTGGCTAGATACAAGGCATT 599
||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 604 AAGAGCTCATGTAGATAATGACGTCTTTCTGCAAGAAGCTGTGGCTAGATACAAAGCATT 663
Query 600 TCTCTACTTGATCAAGGGTAACCGAGAAAGGTCGATTAAACTTTTCTGTGTCCCGACTTA 659
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 664 TCTCTACTTGATCAAGGGTAACCGAGAAAGATCGATCAAACTTTTCTGTGTTCCGACTTA 723
Query 660 CGATATTGATCTTATCTGGCACACACATCAGCTTCATGCTCTCTCTTATTGCAATGATTT 719
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 724 CGATATTGATCTTATCTGGCACACACATCAGCTTCATGCTATCTCTTATTGCAATGATTT 783
Query 720 GACTAAGATGATTGGTAAGGTCTTGGAGCATGATGATACAGACTCTGACCGTAGTAAAGG 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 784 GACTAAGATGATTGGTAAGGTCTTGGAGCATGATGATACAGACTCTGACCGTAGCAAAGG 843
Query 780 TAAGAAGCTTGATACTGGTTTCTCTGGAACTACTGCTCAATGGGAAGAAACATTTGGTCG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TAAGAAGCTTGATACTGGTTTCTCTGGAACTACTGCTCAATGGGAAGAAACATTTGGTCG 903
Query 840 AAGGTATTGGAAAGCCGGTGCTATGAACCGAGGTAATACCCCAAAGCCAGTCACAACTTC 899
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 904 AAGGTATTGGAAAGCCGGTGCTATGAACCGTGGTAATACCCCAAAGCCAGTCACAACTTC 963
Query 900 TCCTTATGTTTGGTCGGGCAAGAAATCAACTGTGAAAGAGGAAGAGTCCCAGAATGTAAT 959
|||||||||||| || || |||||||||| || |||||||||||||||||||||||||||
Sbjct 964 TCCTTATGTTTGTTCTGGAAAGAAATCAATTGCGAAAGAGGAAGAGTCCCAGAATGTAAT 1023
Query 960 CCAATTTTCAGAGGTGAAAGTCATTGAAGTTATCTTGGAGATTGTTGGGGTTGAGAATTT 1019
||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1024 CCAATATCCAGAGGTGAAAGTCATTGAAGTTATCTTGGAGATTGTTGGGGTTAAGAACTT 1083
Query 1020 ACCAGATGCACACAAAGGAAAGGTCTTTGTTCTGTTCAGCAAAACTCAACCCGATTCTCT 1079
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1084 ACCAGATGCTCACAAAGGAAAGGTCTTTGTTCTGTTCAGCAAAACTCAACCAGATTCTCT 1143
Query 1080 GTTTAACGCTGAGCGTAGGCTTACCGTTTTATCTGAGTCTTGTGGGGAAAAGCAAGTTGC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 GTTTAACGCTGAGCGTAGGCTTACCGTTTTATCTGAGTCTTGTGGGGAAAAGCAAGTTGC 1203
Query 1140 TTTGTTTCAGTGTGAGCCTACAGGAGAGCTTAGTTTCCAACTAATGTCTTCCAAGTCTAA 1199
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TTTGTTCCAGTGTGAGCCTACAGGAGAGCTTAGTTTCCAACTAATGTCTTCCAAGTCTAA 1263
Query 1200 GAGCTTAGGTTTCACTTCTTTATCGCTTTCGGAGTTTCTGTT-TCCAGTTACTAAACTCT 1258
||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||
Sbjct 1264 GAGCTTAGGTTTCACTTCTTTATCGTTTTCGGAGTTTCT-TTCTCCAGTAACTAAACTCT 1322
Query 1259 CTGTTGAGAAGTGGTTGGAGATAACACCAACTAAAAGGGGAAAGGCAGATGATCCGAATC 1318
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1323 CTGTTGAGAAGTGGTTGGAGTTAACACCAACTAAAAGGGGAAAGGCAGATGATCCGAATC 1382
Query 1319 CCATCTCTCTGCGAGTTGCTGTCTCTTTCACCCCGCCAACTCGAAGTCCAACTGTTCTAC 1378
|||||||| || |||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1383 CCATCTCTTTGAGAGTCGCTGTCTCGTTCACCCCGCCAACTCGAAGTCCAACTGTTCTAC 1442
Query 1379 ATTTGGTTCAAGCAAGACCATCACTGAAAGGCTCTTGTTTC-TTGCCTATGATCAGAAAG 1437
||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||
Sbjct 1443 ATTTGGTTCAAGCAAGACCATCACTGAAAGGCTCTTGTTTCCTT-CCTATGCTCCGAAAG 1501
Query 1438 GTACGTCTTGCAAAGAGTTTTACACGCGTTGTTGATGAAACTGAAACAGAGGTGATCAAC 1497
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1502 GTACGTCTTGCTAAGAGTTTTACACGCGTTGTTGATGAAACCGAAACAGAGGTGATCAAC 1561
Query 1498 CTCCAAATGAGAAACTCCAACGACACAGCACCCAAAGCTGATAGAAGACAAGTGATTGGT 1557
||||||||||| |||||||| ||| ||||||| |||| ||||||||||||||| ||||||
Sbjct 1562 CTCCAAATGAGGAACTCCAATGACGCAGCACCAAAAGGTGATAGAAGACAAGTTATTGGT 1621
Query 1558 GTAAAAGAGTGTGGTGAAACTTATGTTTTGGCAGAGTATGATGGCAATTTCTGGTCTCTG 1617
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1622 GTAAAAGAGTGTGGTGAAACTTATGTTTTGGCAGAGTATGATGGCACTTTCTGGTCTCTG 1681
Query 1618 CTTGATTCAAAATGGTCACTTAAGCAGACAAGCAATCCTGCAACAGATGGTCCTCTGTTT 1677
|| || |||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1682 CTCGACTCAAAATGGTCACTTAAGCAGACATGCAATCCTGCCACAGATGGTCCTCTGTTT 1741
Query 1678 GAGCTTTCGGGTACTCGAATGGTGAAAGTTTACTCCGGGAGAAAGCTGGAATATGAGCCA 1737
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1742 GAGCTTTCCGGTACTCGAATGGTGAAAGTTTACTCCGGGAGAAAGCTGGAGTATGAGCCA 1801
Query 1738 AAACATTGCTCAAGGCTAAGAAGCGAGCAAGATTTCATGACTGCTGTTGAATTCTCAAAG 1797
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 AAACATTGCTCAAAGCTAAGAAGCGAGCAAGATTTCATGACTGCTGTTGAATTCTCAAAG 1861
Query 1798 CAATATCCTTATGGCAAAGCTGTGGGGTTACTTGATTTGAAGTTGGGTTCTATTGAGGCA 1857
||| |||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1862 CAACATCCTTATGGTAAAGCTGTGGGGTTACTCGATTTGAAGTTCGGTTCTATTGAGGCA 1921
Query 1858 AATGAGAAATGGCTGGTCTTGCCAGGAATTGTATCTTCTTTCATACTCAGTGATCTTCTT 1917
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1922 AATGAGAAATGGCTGGTTTTGCCTGGAATGGTATCTTCTTTCATACTCAGTGATCTTCTT 1981
Query 1918 AAGAAGGAAGGCTTTAGTGCAGCTGCAAAAGACACGGTGAAAGCTAATGGAATAACAGAG 1977
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1982 AAGAAGGAAGGCTTTAGTGCAGCCGCAAAAGACACGGTGAAAGCTAATGGAATAACAGAG 2041
Query 1978 GAAAATAAAGAGATTGACGTTTTGACTCAAGTGAATCAAGAAGAAGAAACAATGATGAAT 2037
|||| || |||||||| ||||||| ||||| || | ||||||||||||||||||| ||
Sbjct 2042 GAAAGTACGGAGATTGATGTTTTGAGTCAAGAAAAGCTAGAAGAAGAAACAATGATGGAT 2101
Query 2038 GTGGACACAACTACTCAAGTTGCTGTAGCGACCGAGAAGATCAATGGTGGTGCTAGGTGC 2097
||||| || ||||| | ||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 2102 GTGGATACGACTACACCAGTTGCTGTAGCGGCCGAGAAGATCAACGGTGGTGCTAGGTGC 2161
Query 2098 CTTTCGAAGGAGCTAAGTGGGAACATGGTTGAAGAAGAaggtggtcactgtggtggttgt 2157
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2162 TTTTCGAAGGAGCTAAGTGGGAACATGATTGAAGAAGAAGGTGGTCACTGTGGTGGTTGT 2221
Query 2158 ggaggttgtggtggatgtggaggtggaggtggatgtggtggtggcggtaggtgcggtggG 2217
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2222 GGAGGTTGTGGTGGATGTGGAGGTGGAGGTGGATGTGGTGGTGGTGGTAGGTGCGGTGGG 2281
Query 2218 ATGACAAAGATAGAAGGTTGCGGTGGCGGATCCTGCACTGGCGGTTCCACTGGCTGCGGT 2277
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2282 ATGACAAAGATAGAAGGCTGCGGCGGCGGATCCTGCACTGGCGGTTCCACTGGCTGCGGT 2341
Query 2278 AATTGCGGTGGAGGATGTGGTAATATGATGAAGAACAATGCCAATGGAAATGCTCCATCA 2337
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2342 AATTGCGGTGGAGGATGTGGTAATATGATGAAGAACAATGCTAATGGAAATGCTCCATCA 2401
Query 2338 GTAGAAAACGACGCAGTTACAGCTTGA 2364
|||||||||||||||||||||||||||
Sbjct 2402 GTAGAAAACGACGCAGTTACAGCTTGA 2428
> AT1G78030.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: Protein of unknown function (duplicated
DUF1399) (TAIR:AT4G37900.1); Has 6 Blast hits to 6 proteins
in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr1:29342157-29343824 FORWARD LENGTH=783
Length=783
Score = 128 bits (69), Expect = 2e-28
Identities = 77/81 (95%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 1516 AACGACACAGCACCCAAAGCTGATAGAAGACAAGTGATTGGTGTAAAAGAGTGTGGTGAA 1575
|||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 469 AACGACGCAGCGCCCAAAGCTGATAGAAGACAAGTGATTGGTGTGAAAGAGTGTGGTGAA 528
Query 1576 ACTTATGTTTTGGCAGAGTAT 1596
||||||||| |||||||||||
Sbjct 529 ACTTATGTTCTGGCAGAGTAT 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117368874210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5