BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg353047 Length=2364 Score E Sequences producing significant alignments: (Bits) Value AT4G37900.1 | Symbols: | Protein of unknown function (duplicat... 3779 0.0 AT1G78030.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 128 2e-28 > AT4G37900.1 | Symbols: | Protein of unknown function (duplicated DUF1399) | chr4:17821737-17824627 REVERSE LENGTH=2428 Length=2428 Score = 3779 bits (2046), Expect = 0.0 Identities = 2261/2367 (96%), Gaps = 6/2367 (0%) Strand=Plus/Plus Query 1 ATGGACAAGGAAAAGGAGCAAACTTTGGAGTGGAACGAAGCTCAGAAGATAGAGATAAGC 60 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 65 ATGGACAAGGAAAAGGAGCAAACTTTGGAGTGGAACGAAGCACAGAAGATAGATATAAGC 124 Query 61 GTTGACCTCTTT-GCTGCAGCCAAAAAACAGCTTCTCTTCCTCGGAGCTGTTGATCGGAA 119 |||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 125 GTTGACCT-TTTGGCTGCAGCCAAGAAACACCTTCTCTTCCTCGGAGCTGTTGATCGGAA 183 Query 120 CCGTTGTCTCTACGATGGCCCTGCACTCGACAGAGCCATCTACAGATACAATGCTTATTG 179 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 184 CCGTTGTCTCTACGATGGCCCTGCACTCCAAAGAGCCATCTACAGATACAATGCTTATTG 243 Query 180 GCTTCCCTTGCTTGCTAAATACACCGAGTCTTCTTCGATCTGTGAAGGACCATTAGTCCC 239 |||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| Sbjct 244 GCTTCCCTTGCTTGCTCAATACACCGAGTCTTCTTCTATCTGTCAAGGACCATTAGTCCC 303 Query 240 TCCTCTTGACTGTGAATGGGTTTGGCATTGCCACAGGCTTACTCCGGTGAGGTATAAGAC 299 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 304 TCCTCTTGACTGTGAATGGGTTTGGCATTGCCACAGGCTTAATCCGGTGAGGTATAAGAC 363 Query 300 TGATTGTGAGCAATTCTATGGGAGAGTTCTTGACAATTCTGGCGTTATATCTTCCGTGAA 359 |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| || Sbjct 364 TGATTGTGAGCAATTCTATGGGAGAGTTCTGGACAATTCTGGCGTTGTATCTTCCGTAAA 423 Query 360 TGGAAACTACAAATCACAAACTGAGACTCTATGGAGAAGATTGTATCCTATGGAGCCTTA 419 |||||||| ||||||||||||||| |||||||||| |||||||||||||| ||||||||| Sbjct 424 TGGAAACTGCAAATCACAAACTGAAACTCTATGGAAAAGATTGTATCCTACGGAGCCTTA 483 Query 420 TGACCTTGATTTTGGCAAGGCAATCTCAGAGCCAGCAGATATCTCAGCTCTTGAGAAATG 479 |||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 484 TGACCTTGATTTTGCCAATGCAATCTCAGAGCCAGCAGATGTCTCAGCTCTTGAGAAATG 543 Query 480 TACCACTTATGATCTTGTTTCAGCTGTCAAGAGACAAAGCCCGTTTTACTACCAGATTTC 539 |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||| Sbjct 544 TACCACTTATGATCTTGTTTTAGCTGTCAAGAGACAAAGCCCATTTTTCTACCAGGTTTC 603 Query 540 AAGAGCTCATGTAGATAATGATGTCTTTCTACAAGAAGCTGTGGCTAGATACAAGGCATT 599 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| Sbjct 604 AAGAGCTCATGTAGATAATGACGTCTTTCTGCAAGAAGCTGTGGCTAGATACAAAGCATT 663 Query 600 TCTCTACTTGATCAAGGGTAACCGAGAAAGGTCGATTAAACTTTTCTGTGTCCCGACTTA 659 |||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| Sbjct 664 TCTCTACTTGATCAAGGGTAACCGAGAAAGATCGATCAAACTTTTCTGTGTTCCGACTTA 723 Query 660 CGATATTGATCTTATCTGGCACACACATCAGCTTCATGCTCTCTCTTATTGCAATGATTT 719 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 724 CGATATTGATCTTATCTGGCACACACATCAGCTTCATGCTATCTCTTATTGCAATGATTT 783 Query 720 GACTAAGATGATTGGTAAGGTCTTGGAGCATGATGATACAGACTCTGACCGTAGTAAAGG 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 784 GACTAAGATGATTGGTAAGGTCTTGGAGCATGATGATACAGACTCTGACCGTAGCAAAGG 843 Query 780 TAAGAAGCTTGATACTGGTTTCTCTGGAACTACTGCTCAATGGGAAGAAACATTTGGTCG 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 844 TAAGAAGCTTGATACTGGTTTCTCTGGAACTACTGCTCAATGGGAAGAAACATTTGGTCG 903 Query 840 AAGGTATTGGAAAGCCGGTGCTATGAACCGAGGTAATACCCCAAAGCCAGTCACAACTTC 899 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 904 AAGGTATTGGAAAGCCGGTGCTATGAACCGTGGTAATACCCCAAAGCCAGTCACAACTTC 963 Query 900 TCCTTATGTTTGGTCGGGCAAGAAATCAACTGTGAAAGAGGAAGAGTCCCAGAATGTAAT 959 |||||||||||| || || |||||||||| || ||||||||||||||||||||||||||| Sbjct 964 TCCTTATGTTTGTTCTGGAAAGAAATCAATTGCGAAAGAGGAAGAGTCCCAGAATGTAAT 1023 Query 960 CCAATTTTCAGAGGTGAAAGTCATTGAAGTTATCTTGGAGATTGTTGGGGTTGAGAATTT 1019 ||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 1024 CCAATATCCAGAGGTGAAAGTCATTGAAGTTATCTTGGAGATTGTTGGGGTTAAGAACTT 1083 Query 1020 ACCAGATGCACACAAAGGAAAGGTCTTTGTTCTGTTCAGCAAAACTCAACCCGATTCTCT 1079 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1084 ACCAGATGCTCACAAAGGAAAGGTCTTTGTTCTGTTCAGCAAAACTCAACCAGATTCTCT 1143 Query 1080 GTTTAACGCTGAGCGTAGGCTTACCGTTTTATCTGAGTCTTGTGGGGAAAAGCAAGTTGC 1139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1144 GTTTAACGCTGAGCGTAGGCTTACCGTTTTATCTGAGTCTTGTGGGGAAAAGCAAGTTGC 1203 Query 1140 TTTGTTTCAGTGTGAGCCTACAGGAGAGCTTAGTTTCCAACTAATGTCTTCCAAGTCTAA 1199 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1204 TTTGTTCCAGTGTGAGCCTACAGGAGAGCTTAGTTTCCAACTAATGTCTTCCAAGTCTAA 1263 Query 1200 GAGCTTAGGTTTCACTTCTTTATCGCTTTCGGAGTTTCTGTT-TCCAGTTACTAAACTCT 1258 ||||||||||||||||||||||||| ||||||||||||| || |||||| |||||||||| Sbjct 1264 GAGCTTAGGTTTCACTTCTTTATCGTTTTCGGAGTTTCT-TTCTCCAGTAACTAAACTCT 1322 Query 1259 CTGTTGAGAAGTGGTTGGAGATAACACCAACTAAAAGGGGAAAGGCAGATGATCCGAATC 1318 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1323 CTGTTGAGAAGTGGTTGGAGTTAACACCAACTAAAAGGGGAAAGGCAGATGATCCGAATC 1382 Query 1319 CCATCTCTCTGCGAGTTGCTGTCTCTTTCACCCCGCCAACTCGAAGTCCAACTGTTCTAC 1378 |||||||| || |||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1383 CCATCTCTTTGAGAGTCGCTGTCTCGTTCACCCCGCCAACTCGAAGTCCAACTGTTCTAC 1442 Query 1379 ATTTGGTTCAAGCAAGACCATCACTGAAAGGCTCTTGTTTC-TTGCCTATGATCAGAAAG 1437 ||||||||||||||||||||||||||||||||||||||||| || |||||| || ||||| Sbjct 1443 ATTTGGTTCAAGCAAGACCATCACTGAAAGGCTCTTGTTTCCTT-CCTATGCTCCGAAAG 1501 Query 1438 GTACGTCTTGCAAAGAGTTTTACACGCGTTGTTGATGAAACTGAAACAGAGGTGATCAAC 1497 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1502 GTACGTCTTGCTAAGAGTTTTACACGCGTTGTTGATGAAACCGAAACAGAGGTGATCAAC 1561 Query 1498 CTCCAAATGAGAAACTCCAACGACACAGCACCCAAAGCTGATAGAAGACAAGTGATTGGT 1557 ||||||||||| |||||||| ||| ||||||| |||| ||||||||||||||| |||||| Sbjct 1562 CTCCAAATGAGGAACTCCAATGACGCAGCACCAAAAGGTGATAGAAGACAAGTTATTGGT 1621 Query 1558 GTAAAAGAGTGTGGTGAAACTTATGTTTTGGCAGAGTATGATGGCAATTTCTGGTCTCTG 1617 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1622 GTAAAAGAGTGTGGTGAAACTTATGTTTTGGCAGAGTATGATGGCACTTTCTGGTCTCTG 1681 Query 1618 CTTGATTCAAAATGGTCACTTAAGCAGACAAGCAATCCTGCAACAGATGGTCCTCTGTTT 1677 || || |||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 1682 CTCGACTCAAAATGGTCACTTAAGCAGACATGCAATCCTGCCACAGATGGTCCTCTGTTT 1741 Query 1678 GAGCTTTCGGGTACTCGAATGGTGAAAGTTTACTCCGGGAGAAAGCTGGAATATGAGCCA 1737 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1742 GAGCTTTCCGGTACTCGAATGGTGAAAGTTTACTCCGGGAGAAAGCTGGAGTATGAGCCA 1801 Query 1738 AAACATTGCTCAAGGCTAAGAAGCGAGCAAGATTTCATGACTGCTGTTGAATTCTCAAAG 1797 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1802 AAACATTGCTCAAAGCTAAGAAGCGAGCAAGATTTCATGACTGCTGTTGAATTCTCAAAG 1861 Query 1798 CAATATCCTTATGGCAAAGCTGTGGGGTTACTTGATTTGAAGTTGGGTTCTATTGAGGCA 1857 ||| |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 1862 CAACATCCTTATGGTAAAGCTGTGGGGTTACTCGATTTGAAGTTCGGTTCTATTGAGGCA 1921 Query 1858 AATGAGAAATGGCTGGTCTTGCCAGGAATTGTATCTTCTTTCATACTCAGTGATCTTCTT 1917 ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1922 AATGAGAAATGGCTGGTTTTGCCTGGAATGGTATCTTCTTTCATACTCAGTGATCTTCTT 1981 Query 1918 AAGAAGGAAGGCTTTAGTGCAGCTGCAAAAGACACGGTGAAAGCTAATGGAATAACAGAG 1977 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1982 AAGAAGGAAGGCTTTAGTGCAGCCGCAAAAGACACGGTGAAAGCTAATGGAATAACAGAG 2041 Query 1978 GAAAATAAAGAGATTGACGTTTTGACTCAAGTGAATCAAGAAGAAGAAACAATGATGAAT 2037 |||| || |||||||| ||||||| ||||| || | ||||||||||||||||||| || Sbjct 2042 GAAAGTACGGAGATTGATGTTTTGAGTCAAGAAAAGCTAGAAGAAGAAACAATGATGGAT 2101 Query 2038 GTGGACACAACTACTCAAGTTGCTGTAGCGACCGAGAAGATCAATGGTGGTGCTAGGTGC 2097 ||||| || ||||| | ||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2102 GTGGATACGACTACACCAGTTGCTGTAGCGGCCGAGAAGATCAACGGTGGTGCTAGGTGC 2161 Query 2098 CTTTCGAAGGAGCTAAGTGGGAACATGGTTGAAGAAGAaggtggtcactgtggtggttgt 2157 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2162 TTTTCGAAGGAGCTAAGTGGGAACATGATTGAAGAAGAAGGTGGTCACTGTGGTGGTTGT 2221 Query 2158 ggaggttgtggtggatgtggaggtggaggtggatgtggtggtggcggtaggtgcggtggG 2217 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2222 GGAGGTTGTGGTGGATGTGGAGGTGGAGGTGGATGTGGTGGTGGTGGTAGGTGCGGTGGG 2281 Query 2218 ATGACAAAGATAGAAGGTTGCGGTGGCGGATCCTGCACTGGCGGTTCCACTGGCTGCGGT 2277 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 2282 ATGACAAAGATAGAAGGCTGCGGCGGCGGATCCTGCACTGGCGGTTCCACTGGCTGCGGT 2341 Query 2278 AATTGCGGTGGAGGATGTGGTAATATGATGAAGAACAATGCCAATGGAAATGCTCCATCA 2337 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2342 AATTGCGGTGGAGGATGTGGTAATATGATGAAGAACAATGCTAATGGAAATGCTCCATCA 2401 Query 2338 GTAGAAAACGACGCAGTTACAGCTTGA 2364 ||||||||||||||||||||||||||| Sbjct 2402 GTAGAAAACGACGCAGTTACAGCTTGA 2428 > AT1G78030.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT4G37900.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:29342157-29343824 FORWARD LENGTH=783 Length=783 Score = 128 bits (69), Expect = 2e-28 Identities = 77/81 (95%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 1516 AACGACACAGCACCCAAAGCTGATAGAAGACAAGTGATTGGTGTAAAAGAGTGTGGTGAA 1575 |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 469 AACGACGCAGCGCCCAAAGCTGATAGAAGACAAGTGATTGGTGTGAAAGAGTGTGGTGAA 528 Query 1576 ACTTATGTTTTGGCAGAGTAT 1596 ||||||||| ||||||||||| Sbjct 529 ACTTATGTTCTGGCAGAGTAT 549 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117368874210 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5