BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353053
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37860.1 | Symbols: | SPT2 chromatin protein | chr4:1780032... 579 2e-164
> AT4G37860.1 | Symbols: | SPT2 chromatin protein | chr4:17800326-17801907
REVERSE LENGTH=1328
Length=1328
Score = 579 bits (313), Expect = 2e-164
Identities = 487/564 (86%), Gaps = 40/564 (7%)
Strand=Plus/Plus
Query 472 AGCCAAATGCTGCCAAGACCAGGTTCATCAACTAATGTTGAAGCGCACATGAGCGG-GGA 530
|||||||||| |||||||||||||||||||| |||||| |||| |||| ||| || |||
Sbjct 472 AGCCAAATGCAGCCAAGACCAGGTTCATCAAATAATGTACAAGCTCACACGAG-GGAGGA 530
Query 531 TTCTGCAAGAAAGTACTCTCGAAAGCAGAAATCGATTAGCAAGAATGGCCAACCAAGTTC 590
||| |||| | |||||| ||||| |||||| || | |||||| ||||||||||||||
Sbjct 531 TTCGGCAA-TTA--ACTCTCAAAAGCGGAAATCAATGAACAAGAAGGGCCAACCAAGTTC 587
Query 591 TAAATTAGGGCC-TCAGAGACAACTGTCCTCATCAAAGCCTTTGACATATGATCCTAAAC 649
|||||| |||| |||||||| |||||||||| ||||||| |||| | ||||| ||||||
Sbjct 588 CAAATTA-GGCCATCAGAGACCACTGTCCTCAACAAAGCCATTGAGACATGATTCTAAAC 646
Query 650 AACAAAGGGTAAAACAGAGGAATGTTTCCTTGGAACTCACAAGGTCGCAACTGCCTCCTG 709
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 647 AACAAAGGGTAGAACAGAGAAATGTTTCCTTGGAACTCACAAGGTCGCAACTGCCTCCTG 706
Query 710 CCAAACACCAGTCGATTAGCGAACCACCATTGAAGCGAGCTCTTCAACTgaagaagaaga 769
| |||||||||| ||||||| |||||||||||||||||| | ||
Sbjct 707 CGAAACACCAGTTGATTAGCAAACCACCATTGAAGCGAG---------T---------GA 748
Query 770 agaagaagaagCCAGTGAAAATGTCAGAAGATGATTTGGTGGCCTTGCAAATGGTTAGAC 829
|| | || ||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 749 AG-A-AA-AAGCCTGTGAAAATGTCAGAAGATGA-TT--TGGCCTTGCAAATGGTTAGAA 802
Query 830 AGATGTGCAAGACTGATCGTTTTGCGGGGCGTGATCTCGACGAAGACTATGATGATAGGT 889
||||||||||||||||||||||||| |||| | | ||||||||||||||||||||||
Sbjct 803 AGATGTGCAAGACTGATCGTTTTGCAGGGC--G---T-GACGAAGACTATGATGATAGGT 856
Query 890 GCATGGAAGCTAACTTTGATGATATCATGAGGGAAGAGAAACGAAGTGAGAAACTTGCGA 949
|||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 857 GCATGGAAGCCAACTTTGATGATATCATGAGGGAAGAGAAACGGAGTGAGAGACTTGCGA 916
Query 950 AGAAAGAAGACGCGGAACAACTGCGGTTGATAGAGGAAGAAGAAAGAGTGAGAAAGCAGA 1009
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 917 AGAAAGAAGACGCGGAACAACTGCGGTTGGTAGAGGAAGAAGAAAGAGTGAGAAGGCAGA 976
Query 1010 TCAAGAAGCAGAAGCTAAGCCATT 1033
| ||||||||| || |||||||
Sbjct 977 --A-GAAGCAGAAACTTAGCCATT 997
Score = 303 bits (164), Expect = 2e-81
Identities = 224/251 (89%), Gaps = 11/251 (4%)
Strand=Plus/Plus
Query 38 AATCAGAGTTTCTTGAATTCCGTCAACGGATTAAAGAGTCGATTAGGAAGAAGATGCAAA 97
||||||||||||||||||| |||||||||||||| || |||||||||| |||||||||||
Sbjct 5 AATCAGAGTTTCTTGAATTGCGTCAACGGATTAAGGAATCGATTAGGACGAAGATGCAAA 64
Query 98 ACGGAAACACTATTATAGCTCCAACATCACAG--AC----ACATGAGAGCAAAAGTAATC 151
|||| | |||||||| |||||||| |||||| || |||| |||||||||||||||
Sbjct 65 GCGGAGATACTATTATTGCTCCAACCTCACAGACACAGTTACATCAGAGCAAAAGTAATC 124
Query 152 TTCCTTATAACGACTTTGGTTCCTTTTTTGGTCCTTCTCAGACTGTTATTGCTTCAAGAG 211
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 TTCC--GT-ACGACTTTGGTTCCTTTTTTGGTCCTTCTCAGACTGTTATTGCTTCAAGAG 181
Query 212 TCTTACAAGAAAGCAAAGCG-CTTTTAGAAAACAAGACATCGGCTGCTAAAATGTTAAAC 270
|||||||||||||||| || |||||||||||| ||||||| || |||||||||||||||
Sbjct 182 TCTTACAAGAAAGCAA-GCCTCTTTTAGAAAACGAGACATCAGCAGCTAAAATGTTAAAC 240
Query 271 TCGATTCAAAA 281
|| ||||||||
Sbjct 241 TCTATTCAAAA 251
Score = 189 bits (102), Expect = 5e-47
Identities = 129/142 (91%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 304 AATGCGAATGAGGTGAAAAGAAAAGCTGAGAAACTTAGGGATGCAAGAGACTACTCTTTC 363
|||||||||||||| ||| |||||||||| ||||||| ||||| |||||||||||| |||
Sbjct 340 AATGCGAATGAGGTCAAACGAAAAGCTGAAAAACTTAAGGATGGAAGAGACTACTCATTC 399
Query 364 CTTTTCTCTGATGATGCTCAGCTTCCTGTTTCCATCAAGCAACCACCTAAGTT-TAGACC 422
||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 400 CTTTTCTCTGATGATGCTCAGCTTCCTGTTTCCATCAAGGAACCACCTAC-TTCTAGACC 458
Query 423 AAGTTCCAGAGAAATCCAAATG 444
|||||||| ||| | |||||||
Sbjct 459 AAGTTCCACAGAGAGCCAAATG 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5