BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg353053 Length=1035 Score E Sequences producing significant alignments: (Bits) Value AT4G37860.1 | Symbols: | SPT2 chromatin protein | chr4:1780032... 579 2e-164 > AT4G37860.1 | Symbols: | SPT2 chromatin protein | chr4:17800326-17801907 REVERSE LENGTH=1328 Length=1328 Score = 579 bits (313), Expect = 2e-164 Identities = 487/564 (86%), Gaps = 40/564 (7%) Strand=Plus/Plus Query 472 AGCCAAATGCTGCCAAGACCAGGTTCATCAACTAATGTTGAAGCGCACATGAGCGG-GGA 530 |||||||||| |||||||||||||||||||| |||||| |||| |||| ||| || ||| Sbjct 472 AGCCAAATGCAGCCAAGACCAGGTTCATCAAATAATGTACAAGCTCACACGAG-GGAGGA 530 Query 531 TTCTGCAAGAAAGTACTCTCGAAAGCAGAAATCGATTAGCAAGAATGGCCAACCAAGTTC 590 ||| |||| | |||||| ||||| |||||| || | |||||| |||||||||||||| Sbjct 531 TTCGGCAA-TTA--ACTCTCAAAAGCGGAAATCAATGAACAAGAAGGGCCAACCAAGTTC 587 Query 591 TAAATTAGGGCC-TCAGAGACAACTGTCCTCATCAAAGCCTTTGACATATGATCCTAAAC 649 |||||| |||| |||||||| |||||||||| ||||||| |||| | ||||| |||||| Sbjct 588 CAAATTA-GGCCATCAGAGACCACTGTCCTCAACAAAGCCATTGAGACATGATTCTAAAC 646 Query 650 AACAAAGGGTAAAACAGAGGAATGTTTCCTTGGAACTCACAAGGTCGCAACTGCCTCCTG 709 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 647 AACAAAGGGTAGAACAGAGAAATGTTTCCTTGGAACTCACAAGGTCGCAACTGCCTCCTG 706 Query 710 CCAAACACCAGTCGATTAGCGAACCACCATTGAAGCGAGCTCTTCAACTgaagaagaaga 769 | |||||||||| ||||||| |||||||||||||||||| | || Sbjct 707 CGAAACACCAGTTGATTAGCAAACCACCATTGAAGCGAG---------T---------GA 748 Query 770 agaagaagaagCCAGTGAAAATGTCAGAAGATGATTTGGTGGCCTTGCAAATGGTTAGAC 829 || | || ||||| |||||||||||||||||||| || |||||||||||||||||||| Sbjct 749 AG-A-AA-AAGCCTGTGAAAATGTCAGAAGATGA-TT--TGGCCTTGCAAATGGTTAGAA 802 Query 830 AGATGTGCAAGACTGATCGTTTTGCGGGGCGTGATCTCGACGAAGACTATGATGATAGGT 889 ||||||||||||||||||||||||| |||| | | |||||||||||||||||||||| Sbjct 803 AGATGTGCAAGACTGATCGTTTTGCAGGGC--G---T-GACGAAGACTATGATGATAGGT 856 Query 890 GCATGGAAGCTAACTTTGATGATATCATGAGGGAAGAGAAACGAAGTGAGAAACTTGCGA 949 |||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 857 GCATGGAAGCCAACTTTGATGATATCATGAGGGAAGAGAAACGGAGTGAGAGACTTGCGA 916 Query 950 AGAAAGAAGACGCGGAACAACTGCGGTTGATAGAGGAAGAAGAAAGAGTGAGAAAGCAGA 1009 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 917 AGAAAGAAGACGCGGAACAACTGCGGTTGGTAGAGGAAGAAGAAAGAGTGAGAAGGCAGA 976 Query 1010 TCAAGAAGCAGAAGCTAAGCCATT 1033 | ||||||||| || ||||||| Sbjct 977 --A-GAAGCAGAAACTTAGCCATT 997 Score = 303 bits (164), Expect = 2e-81 Identities = 224/251 (89%), Gaps = 11/251 (4%) Strand=Plus/Plus Query 38 AATCAGAGTTTCTTGAATTCCGTCAACGGATTAAAGAGTCGATTAGGAAGAAGATGCAAA 97 ||||||||||||||||||| |||||||||||||| || |||||||||| ||||||||||| Sbjct 5 AATCAGAGTTTCTTGAATTGCGTCAACGGATTAAGGAATCGATTAGGACGAAGATGCAAA 64 Query 98 ACGGAAACACTATTATAGCTCCAACATCACAG--AC----ACATGAGAGCAAAAGTAATC 151 |||| | |||||||| |||||||| |||||| || |||| ||||||||||||||| Sbjct 65 GCGGAGATACTATTATTGCTCCAACCTCACAGACACAGTTACATCAGAGCAAAAGTAATC 124 Query 152 TTCCTTATAACGACTTTGGTTCCTTTTTTGGTCCTTCTCAGACTGTTATTGCTTCAAGAG 211 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 TTCC--GT-ACGACTTTGGTTCCTTTTTTGGTCCTTCTCAGACTGTTATTGCTTCAAGAG 181 Query 212 TCTTACAAGAAAGCAAAGCG-CTTTTAGAAAACAAGACATCGGCTGCTAAAATGTTAAAC 270 |||||||||||||||| || |||||||||||| ||||||| || ||||||||||||||| Sbjct 182 TCTTACAAGAAAGCAA-GCCTCTTTTAGAAAACGAGACATCAGCAGCTAAAATGTTAAAC 240 Query 271 TCGATTCAAAA 281 || |||||||| Sbjct 241 TCTATTCAAAA 251 Score = 189 bits (102), Expect = 5e-47 Identities = 129/142 (91%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 304 AATGCGAATGAGGTGAAAAGAAAAGCTGAGAAACTTAGGGATGCAAGAGACTACTCTTTC 363 |||||||||||||| ||| |||||||||| ||||||| ||||| |||||||||||| ||| Sbjct 340 AATGCGAATGAGGTCAAACGAAAAGCTGAAAAACTTAAGGATGGAAGAGACTACTCATTC 399 Query 364 CTTTTCTCTGATGATGCTCAGCTTCCTGTTTCCATCAAGCAACCACCTAAGTT-TAGACC 422 ||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| Sbjct 400 CTTTTCTCTGATGATGCTCAGCTTCCTGTTTCCATCAAGGAACCACCTAC-TTCTAGACC 458 Query 423 AAGTTCCAGAGAAATCCAAATG 444 |||||||| ||| | ||||||| Sbjct 459 AAGTTCCACAGAGAGCCAAATG 480 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50736488470 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5