BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg353057

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37810.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   621    1e-177


> AT4G37810.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G10310.1); Has 
149 Blast hits to 149 proteins in 15 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17780970-17781745 
FORWARD LENGTH=588
Length=588

 Score =  621 bits (336),  Expect = 1e-177
 Identities = 371/387 (96%), Gaps = 6/387 (2%)
 Strand=Plus/Plus

Query  1    ATGGTGTGGAGCAGCAAAATGTCAAGCTTTCTACTGATTTTGCTCATTCTTAATTCGACC  60
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGTGGAGCAGCAACATGTCAAGCTTTCTACTGATTTTGCTCATTCTTAATTCGACC  60

Query  61   CATTTCAGTCTAATGGCTAATGGTAGACCAGAGCCAAACTCAGTCGAATTCACCAAGAGT  120
            |||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||
Sbjct  61   CATTTCAGTCTAATGGCTAATGGTAGACCAGAGCCTGACTCTGTCGAATTCACCAAGAGT  120

Query  121  GGAGATCAAGATGAGAAGATGATGATGAGAGGTCTAATAGGATCAAGACCACCAAGATGT  180
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGAGATCAAGATGTGAAGATGATGATGAGAGGTCTAATAGGATCAAGACCACCAAGATGT  180

Query  181  GAGAGAGTGAGATGTCGTTCTTGTGGTCATTGTGAAGCAATTCAAGTTCCTACAAATCCT  240
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GAGAGAGTAAGATGTCGTTCTTGTGGTCATTGTGAAGCAATTCAAGTTCCTACAAATCCT  240

Query  241  CAAACAAAGCTTCACTCTCCTTT---TAC--CA-CTTCTTCTTCCTCTGAGATTATTCAT  294
            |||||||||||||||||||||||   |||  |  |||||||||||||||||| |||||||
Sbjct  241  CAAACAAAGCTTCACTCTCCTTTAACTACTTCTTCTTCTTCTTCCTCTGAGACTATTCAT  300

Query  295  CTTGATTACACTAGAGGAGATGATAGTACTAATTACAAACCCATGAGCTGGAAATGCAAA  354
            ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CTTGACTACACCAGAGGAGATGATAGTACTAATTACAAACCCATGAGCTGGAAATGCAAA  360

Query  355  TGTGGTAACTCTATCTACAACCCTTGA  381
            |||||||||||||||||||||||||||
Sbjct  361  TGTGGTAACTCTATCTACAACCCTTGA  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17945586393


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5