BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353119
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH) DNA-... 1568 0.0
> AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:17414127-17416294 FORWARD
LENGTH=1511
Length=1511
Score = 1568 bits (849), Expect = 0.0
Identities = 1013/1087 (93%), Gaps = 32/1087 (3%)
Strand=Plus/Plus
Query 1 ATGGGAGATAAGAAATTGA-TT--TCTTCTTCTTCTTCCTCGGTTTACGATACTACTCGT 57
||||||||||||||||||| || ||||||||||||||||||||||||| | |||||||
Sbjct 86 ATGGGAGATAAGAAATTGATTTCATCTTCTTCTTCTTCCTCGGTTTACG--A-TACTCGT 142
Query 58 ATCAATCATCA---TCATCATCCTCCGTCTTCTTCCGACGAAATCTCTCAGTTTCTCCGG 114
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 ATCAATCATCATCTTCATCATCCTCCGTCTTCTTCCGACGAAATCTCTCAGTTTCTCCGG 202
Query 115 CATATTTTCGACCGTTCTTCTCCTTTACCTTCTTACTATTCTCCGGCGACGACGACGACA 174
|||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 203 CATATTTTCGACCGTTCTTCTCCTTTACCTTCTTACTACTCCCCGGCGACGACTACAACG 262
Query 175 ACGACTTCAATGATTGGTGTGCAAGTTCA-CGGTGACCCACATGCAGATAACTCGACAAG 233
||| | || ||||||||||||| | | |||||||||||||||||||||||||| |||
Sbjct 263 ACGGCGTCTTTGATTGGTGTGCACG-GGAGCGGTGACCCACATGCAGATAACTCGAGAAG 321
Query 234 TCTCGTTTCTCATCATCCACCGTCGGATTCTGTGCTCATGTCGAAACGTGTCGGAGATTT 293
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 322 TCTCGTTTCTCATCATCCACCGTCAGATTCTGTGCTTATGTCGAAACGTGTCGGAGATTT 381
Query 294 CTCTGAGGTTTTAAT---C---GG--C-GG---AG--G-CGCGTGTTTTGGTTTCTCCGG 338
||||||||||||||| | || | || || | |||||||||||||||||||||
Sbjct 382 CTCTGAGGTTTTAATCGGCGGAGGATCAGGCTCAGCCGCCGCGTGTTTTGGTTTCTCCGG 441
Query 339 TGGTGGTAATAATAATAACGCTCAGGGAAATAGCTCTGGGACTCGAGTATCGTCTTCTTC 398
||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 442 TGGTGGTAATAATAACAACGTTCAAGGAAATAGCTCTGGGACTCGAGTATCGTCTTCTTC 501
Query 399 TGTTGGAGCTAGTGGAAACGAGACCGATGAGTATGACTGCGAAAGCGAGGAAGGAGGAGA 458
|||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 502 CGTTGGAGCTAGTGGCAACGAGACAGATGAGTATGACTGTGAAAGCGAGGAAGGAGGAGA 561
Query 459 AGCTGTAGTTGATGAAGCTCCCTCTTCCAAGTCAGGTCCTTCTTCTCGTAGTTCATCTAA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 AGCTGTAGTTGATGAAGCTCCCTCTTCCAAGTCAGGTCCTTCTTCTCGTAGTTCATCTAA 621
Query 519 GAGATGCAGAGCTGCTGAAGTTCATAATCTCTCTGAGAAGAGGAGGAGAAGTAGAATCAA 578
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 622 AAGATGCAGAGCTGCTGAAGTTCATAATCTCTCTGAGAAGAGGAGGAGAAGTAGAATTAA 681
Query 579 TGAAAAAATGAAAGCTTTGCAGAGTCTCATCCCTAATTCAAATAAGACGGATAAGGCTTC 638
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 682 TGAAAAAATGAAAGCTTTACAAAGTCTCATCCCTAATTCAAATAAGACGGATAAGGCTTC 741
Query 639 AATGCTTGATGAAGCCATTGAATATCTGAAACAGCTTCAGCTCCAAGTTCAGATGTTGAC 698
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 742 AATGCTTGATGAAGCCATTGAGTATCTGAAACAGCTTCAGCTCCAAGTTCAGATGTTGAC 801
Query 699 AATGAGAAATGGGATAAACTTACATCATCCTTTGTGCTTACCTGGAACTACATTACATCC 758
||||||||||| |||||||| |||| | |||||| |||||||||||||||||||| ||
Sbjct 802 TATGAGAAATGGAATAAACTTGCATC--C-TTTGTGTTTACCTGGAACTACATTACACCC 858
Query 759 ATTGCAACTCTCTCAGATTCGACCCCCAGAAGCAACCAATGATCCTCTGCTCAATCATAC 818
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 859 ATTGCAACTCTCTCAGATTCGACCCCCTGAAGCAACCAATGATCCTCTGCTTAATCATAC 918
Query 819 CAATCAGTTTGCTTCGACTTCTAATGCACCGGAAATGATCAATACCGTGGCTTCTTCATA 878
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 919 CAATCAGTTTGCTTCGACTTCTAATGCACCGGAAATGATCAATACTGTGGCTTCTTCATA 978
Query 879 CGCATTGGAACCTTCCATTCGCAGTCACTTTGGACCTTTCCCTCCTCTCCTTAATTCACC 938
||| ||||||||||| |||||||||||||||||||||||||||| || | ||| ||||||
Sbjct 979 CGCTTTGGAACCTTCTATTCGCAGTCACTTTGGACCTTTCCCTC-TC-C-TTACTTCACC 1035
Query 939 CGCGGAGATGAGTCGGGAAGGAGGGTTAACTCATCAAAGGTTGAACATTGGTCATTCCAA 998
|| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1036 CGTGGAGATGAGTCGGGAAGGTGGGTTAACTCATCCAAGGTTGAACATTGGTCATTCCAA 1095
Query 999 CGCAAACTTAACCGGGGAACAAGCTCTGTTTGATGGACAACCTGACCTAAAAGATCGAAT 1058
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 CGCAAACATAACCGGGGAACAAGCTCTGTTTGATGGACAACCTGACCTAAAAGATCGAAT 1155
Query 1059 TACTTGA 1065
|||||||
Sbjct 1156 TACTTGA 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5