BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353127
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37000.1 | Symbols: ACD2, ATRCCR | accelerated cell death 2 ... 1415 0.0
> AT4G37000.1 | Symbols: ACD2, ATRCCR | accelerated cell death
2 (ACD2) | chr4:17442612-17443855 FORWARD LENGTH=1068
Length=1068
Score = 1415 bits (766), Expect = 0.0
Identities = 908/975 (93%), Gaps = 15/975 (2%)
Strand=Plus/Plus
Query 1 ATGGCGATGATATTTTGCAACActctctactcttcttcttctccatcatctctctcGCCG 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 16 ATGGCGATGATATTTTGCAACACTCTCTACTCTTCTTCTTCTCCATCATATCTCTCGCCG 75
Query 61 TTAACATTAACTTCAACTCCAACAAAACCGTCGCGATTCCCAAAGAATCTCAAAGCTCGA 120
||||| | | ||||||||||||||||| |||||||||||| | |||||
Sbjct 76 ------TTAAC-T----T----CAAAACCGTCGCGATTCTCAAAGAATCTCAGACCTCGA 120
Query 121 GCTCAATTCCAGTCCATGGAAGATCACGACGACCATCTCCGCCGCAAATTCATGGAGTTC 180
||||||||||||||||||||||| |||||||| || |||||||| ||||| |||||||||
Sbjct 121 GCTCAATTCCAGTCCATGGAAGACCACGACGATCACCTCCGCCGAAAATTTATGGAGTTC 180
Query 181 CCGTACGTGTCACCCATGCGCAAGCAGCTTATGGTTGATCTCATGTCGACGGTGGAGAAT 240
||||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 181 CCGTATGTGTCACCCACGCGGAAGCAGCTCATGGTTGATCTCATGTCGACGGTGGAGAAT 240
Query 241 CGCCTCCAATCGCAACTCCTTCCCTGTAACCTCCCGCCAGATGTACGAAACTTTAAGAAC 300
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 241 CGCCTCCAATCACAACTCCTTCCCTGTAACCTCCCTCCAGATGTACGAAACTTCAATAAC 300
Query 301 CCTAACGGTTCCGCCGAAGCATCTCTTCACATCAGATCCGGCCAGAAATCATCTCCGATT 360
||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||||||
Sbjct 301 CCTAACGGTTCCGCCGAAGCATCTCTTCATATCAGATCCGGCGACAAATCTTCTCCGATT 360
Query 361 GATTTTGTTATAGGAAGTTGGATACATTGCAAGATCCCAACAGGAGTATCTCTGAATATA 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 GATTTTGTTATAGGAAGTTGGATACATTGCAAGATCCCAACAGGAGTATCTTTGAATATA 420
Query 421 ACAAGTATCTCTGCATTCTTAAACTCGTCAACAAAAGCTCCAAACTTTGTTGTCGAACTA 480
||||| ||||||| |||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 421 ACAAGCATCTCTGGATTCTTAAACTCATCAACAAAAGCTCCAAACTTTGTGGTCGAACTA 480
Query 481 ATACAGAGCAGTCCCTCGTCGCTCGTGCTAATCCTTGACCTCCCACATCGTAAAGATCTC 540
|||||||||||| || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 ATACAGAGCAGTTCCAAGTCGCTTGTGCTAATCCTTGACCTCCCACATCGTAAAGATCTT 540
Query 541 GTTCTTAACCCGGATTATCTCAAGGAGTATTACCAAGACACTGCTCTTGATTCTCATCGC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTCTTAACCCGGATTATCTCAAGGAGTATTACCAAGACACTGCTCTTGATTCTCATCGA 600
Query 601 CAATCTCTCCTTAAGCTACCTGAAGTCAAACCTTATGTGTCTCCTTCTCTATTTGTTCGC 660
|||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 601 CAATCTCTCCTTAAGCTACCTGAAGTTAACCCTTATGTGTCTCCTTCTCTCTTTGTCCGT 660
Query 661 TCTGCTTTCTCTCCTACTGCTTCGATGCTTAAGATCGATGCGGAGGAAGAGGATAAGTTG 720
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 TCTGCTTTCTCTCCTACTGCTTCGATGCTTAAGATTGATGCGGAGGAAGAGGATAAGTTG 720
Query 721 GAGGAGATCTTGAGAGATCATGTTAGTCCAGCTGCTAAGGAGGTTCTCGAGGTTTGGTTG 780
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGGAGATATTGAGAGATCATGTTAGTCCAGCTGCTAAGGAGGTTCTCGAGGTTTGGTTG 780
Query 781 GAGCGGTGTGCCaaggaagaagaggagaagagagtgattggggaagaagagagaatggag 840
|||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct 781 GAGCGGTGTGTGAAGGAAGAAGAAGAGAAGATTGTGGTTGGGGAAGAAGAGAGAATGGAG 840
Query 841 ttggagagaagagataaaagctttagaaggaagagcatagaggaagaTTTGGATTTGCAG 900
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 TTGGAGAGAAGAGATAAAAGCTTTAGAAGGAAGAGCATAGAGGACGATTTGGATTTGCAG 900
Query 901 TTTCCGAGAATGTTTGGGGAAGATGTTTCCTCACGTGTTGTACACGCTATCAAAGAAGCA 960
||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 901 TTTCCGAGAATGTTTGGTGAAGAAGTTTCCTCCCGTGTTGTACACGCTATTAAAGAAGCT 960
Query 961 TTCGGTGTTCTTTAG 975
||||||||||| |||
Sbjct 961 TTCGGTGTTCTCTAG 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5