BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353160
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36820.1 | Symbols: | Protein of unknown function (DUF607) ... 1406 0.0
AT2G23790.1 | Symbols: | Protein of unknown function (DUF607) ... 566 2e-160
> AT4G36820.1 | Symbols: | Protein of unknown function (DUF607)
| chr4:17346805-17347994 FORWARD LENGTH=1101
Length=1101
Score = 1406 bits (761), Expect = 0.0
Identities = 900/967 (93%), Gaps = 9/967 (1%)
Strand=Plus/Plus
Query 3 GGCGTCGCAAAGTCTCATGAACTGTCGTACTTCG---TCTTCTTCGCTAGCCGTGCGAAC 59
|||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct 138 GGCGTCGCAAAGTCTCATGAACTGTCGTACTTCGTCTTCTTCTTCGTTAGCCATGCGAAC 197
Query 60 TAGGGTTCCTAAAGATATAGGAGAAACCACGATTGATCCAGAGCCTGGGGATTTGACGAT 119
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 198 TAGGGTTCCTAAAGATATAGGAGAAGCCACGATTGATCCAGAGCCTGGAGATTTGACGAT 257
Query 120 TTCTCAAAGGTTTTTGCATAAATTTTCCATGAATGGGATTGATACGACTTCGATGATGTC 179
|||||| ||||||||| ||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 258 TTCTCAGAGGTTTTTGAATAAATTCTCCATGAATGGGATTGATACGACTTCGAAGATGTC 317
Query 180 -AATGGGAGAGAGTTTGATGGGGAAGCTTAAAGAAATGGATGTGAACAAGGATCGGATTC 238
| |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 318 TATTGGG-GAGAGTCTGATGGAGAAGCTTAAAGAAATGGATATGAACAAGGATCGGATTC 376
Query 239 GATTAGACGGACTTTCTCATCCGAAGGAGGAGACGTTGGGGCTTACTGTGCAAGACGTGA 298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 377 GATTAGACGGACTTTCTCATCCGAAGGAGGAGACGTTAGGGCTTACTGTGCAAGACGTGA 436
Query 299 AGAAGTTGCTAAGAGC-GTCAGAGATCGAAGTTGTTAAAACAAAACTGTTGGAGACGGGA 357
|||||||||||||||| | |||||||||||||| ||||||| || ||| ||||||| |||
Sbjct 437 AGAAGTTGCTAAGAGCAG-CAGAGATCGAAGTTATTAAAACGAAGCTGATGGAGACAGGA 495
Query 358 AAAATCTGGATTCGTTACTCCGATTTTGTT-CGTGTTTGTAGTGATTCTTCTTTGGATCC 416
|||||||||||||||||||| || ||| || ||||||||||||||||||||||||||||
Sbjct 496 AAAATCTGGATTCGTTACTCAGA-TTTCTTAGGTGTTTGTAGTGATTCTTCTTTGGATCC 554
Query 417 TTCGCAAGGACCTTTGATCGCAAAGATGCTTGATGATTCAGGAAACGTTATCGTTTTGGG 476
||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 555 TTCTCAAGGAGCTTTGATCGCTAAGATGCTTGATGATTCAGGAAACGTTATCGTTATGGG 614
Query 477 AAACTCTGTTTGTTTAAGACCTGATCAGGTAACCAAATCCATTGAGGGGCTGCTTCCTTT 536
|||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||
Sbjct 615 AAACTCTGTTTGTTTAAGACCTCATCAGTTAACCAAATCCATAGAGGGGCTTCTTCCTTT 674
Query 537 ACCACAGATTCATAACCCAAATGACCCGAGAAGAAAGGAGCTAAAAGATCTTGAAGCTAT 596
| |||| || |||||||| |||||||| ||||||||||||||||| || |||||||||||
Sbjct 675 ATCACAAATCCATAACCCGAATGACCCAAGAAGAAAGGAGCTAAATGAGCTTGAAGCTAT 734
Query 597 AAAGACGGTCATCGATCAGAAAGCACATTCTTTGGTGAGAAGAGAGCTTTGGGCTGGTTT 656
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 735 AAAGACGGTCATTGACCAAAAAGCACATTCTTTGGTGAGAAGAGAGCTTTGGGCTGGTTT 794
Query 657 GGGTTACTTGATCATCCAGACCGCAGCGTTCATGAGGCTAACGTTTTGGGAACTCACATG 716
|||||||||||||||||| ||||||| ||| |||||||||||||||||||| || |||||
Sbjct 795 GGGTTACTTGATCATCCAAACCGCAGGGTTTATGAGGCTAACGTTTTGGGACCTGACATG 854
Query 717 GGATGTTATGGAACCGATCTGTTTCTATGTCACATCGGTATATTTCATGGCGGGTTATGC 776
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 855 GGATGTTATGGAACCGATCTGTTTCTATGTCTCATCGGTATATTTCATGGCGGGTTACAC 914
Query 777 TTTTTTCCTCAAGACATCGAGAGAGCCTTCCTTTGAAGGGTTTTACCAAAGCAGGTTTGA 836
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 915 ATTTTTCCTCAAGACATCGAGAGAGCCTTCCTTTCAAGGTTTTTACCAAAGCAGGTTTGA 974
Query 837 GGCTAAACAGAGGAAACTGATGGAATCTGAGGATTTTGATGTTGGGAGGTACGATGAGCT 896
||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 975 GGCTAAACAAAGGAAACTGATGCAATCTGAGGATTTTGATGTTGGGAGGTATGATGAGCT 1034
Query 897 GAAGAAGCTGTTTAATCCCAAGCCTTCAGGTGCTGTTTCCAAGATTCTTGGAACTCTATG 956
||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1035 GAAAAAGCTGTTTAATCCCAAGCCTTCAGGTGCTGTTCCCAAGATTCTTGGATCTCTACA 1094
Query 957 GAATTGA 963
|||||||
Sbjct 1095 GAATTGA 1101
> AT2G23790.1 | Symbols: | Protein of unknown function (DUF607)
| chr2:10125368-10127521 REVERSE LENGTH=1401
Length=1401
Score = 566 bits (306), Expect = 2e-160
Identities = 756/966 (78%), Gaps = 60/966 (6%)
Strand=Plus/Plus
Query 13 AGTCTCATGAACTGTCGTACTTCGTCTTCTTCGCTAGCCGTGCGAACTAGGGTTCCTAAA 72
||||| ||||| ||||| | ||||||||||||| ||||||| ||||| || ||||| ||
Sbjct 127 AGTCTTATGAATTGTCGCATTTCGTCTTCTTCGTTAGCCGTACGAACCAGAGTTCCGAAT 186
Query 73 GA-T--ATAGGAGA-AACCACGATTG-ATCCAGAGCCTGGGGATTTGACGATTTCTCAAA 127
|| | | | || | ||||| || | | || |||||||| |||||| |||| || | ||
Sbjct 187 GATTCAACA-GATACAACCAAAATCGCA-CCGGAGCCTGGAGATTTGGCGATGTCGCGAA 244
Query 128 GGTTTTTGCATAA-ATTTTCCATGAAT-GG--GATTGATACGACTTCGATGATGTCAATG 183
|||| ||||||| | | | |||| | || | || | | | | | |||| | ||
Sbjct 245 GGTTCATGCATAACA-GTGCTATGATTAGGCCGGCGGAGATTA-TGC-A-GATGCCGGTG 300
Query 184 GGAGAGAGTTTGATGGGGAAGCTTAAAGAAATGGATGTGAA-CAAGGATCGGATTCGATT 242
|||||||||||||| | ||| || || || |||| ||| ||||||||||||||||||
Sbjct 301 GGAGAGAGTTTGATTGAGAAACTCCGTGAGATTGATG-GAAGCAAGGATCGGATTCGATT 359
Query 243 AGACGGACTTTCTCATCCGAAGGA-GGAGACGTTGGGGCTT-ACTGT-GCAAGACGTGAA 299
|||||||||||||| ||| | || |||||| | | || || || || || |||
Sbjct 360 AGACGGACTTTCTCCGCCGGA-GAGGGAGAC----GAGTTTGACGGTGGC-GGATACGAA 413
Query 300 GAAGTTGCTAAGAGCGTCAG-AGATCGAAG-TTGTTAAAACAAAACTGTTG-GAGACGGG 356
|||| |||| |||||| | | |||||| || |||| ||| | || || | || |||||
Sbjct 414 GAAGCTGCTTAGAGCGGC-GCAGATCG-AGATTGTGAAATCGAAGCT-AAGAGAAACGGG 470
Query 357 AAAAATCTGGAT-TCGTTACT-CCGATTTTGTTCGTGTTTGTAGTGATTCTTCTTTGGAT 414
|| || |||||| || || | || |||||| | |||||| |||| |||||| |||
Sbjct 471 AAGAAGCTGGATGCCG-TA-TAAGGAGTTTGTTAGCGTTTGTGGTGAAGCTTCTTCAGAT 528
Query 415 CC--TTCGCAAGGACCTTTGATCGCAAAGATGCTTGATGATTCAGGAAACGTTATCGTTT 472
|| || | ||| || ||||| ||||||||||||||||||| |||||| |||||||
Sbjct 529 CCAGATCTC--GGATCTAAAATCGCGAAGATGCTTGATGATTCAGCAAACGTCATCGTTT 586
Query 473 TGGGAAACTCTGTTTGT-TTAAGACCTGATCAGGTAACCAAATCCATTGAGGGGCTGCTT 531
||||| | || |||||| || |||||||||||||| |||||||||||||| || ||||||
Sbjct 587 TGGGAGATTCCGTTTGTATT-AGACCTGATCAGGTTACCAAATCCATTGAAGGACTGCTT 645
Query 532 CCTTTACCACAGATTCATAACCCAAATGACCCGAGAAGAAAGGAGCTAAAAGATCTTGAA 591
||||| ||| |||| ||||||||||||||||| | |||| ||| | ||||| ||||||
Sbjct 646 CCTTTGCCAAAGATCCATAACCCAAATGACCCTCGGAGAATCGAGTTTAAAGAGCTTGAA 705
Query 592 GCT-ATAAAGACGGTCATCGATCAGAAAGCACATTCTTTGGTG-AGAAGAGAGCTTTGGG 649
||| | |||| | || |||||| |||||| || |||||||| ||| |||||||||||
Sbjct 706 GCTGA-AAAGGCAGTGATCGATGTGAAAGCTCACACTTTGGTGCGGAA-AGAGCTTTGGG 763
Query 650 CTGGTTTGGGTTACTTGATCATCCAGACCGCAGCGTTCATGAGGCTAACGTTTTGGGAAC 709
||||| | |||||||||||| | ||||| || | ||||||||||||||||||||||||||
Sbjct 764 CTGGTCTCGGTTACTTGATCCTACAGACTGCGGGGTTCATGAGGCTAACGTTTTGGGAAC 823
Query 710 TCACATGGGATGTTATGGAACCGATCTGTTTCTATGTCACATCGGTATA-TTTCATGGCG 768
|| | ||||| || ||||| || ||||||||||||||||| || || || ||| |||||
Sbjct 824 TCTCGTGGGACGTGATGGAGCCAATCTGTTTCTATGTCACGTCCGTGTACTTT-ATGGCT 882
Query 769 GGTTATGCTTTTTTCCTCAAGACATCGAGAGAGCCTTCCTTTGAAGGGTTTTACCAAAGC 828
||||| || |||||||||| |||||||| ||||||||| |||||||||||||||||||||
Sbjct 883 GGTTACGCGTTTTTCCTCAGGACATCGAAAGAGCCTTCTTTTGAAGGGTTTTACCAAAGC 942
Query 829 AGGTTTGAGGCTAAACAGAGGAAACT-GATGGAATCTG-AGGATTTTGATGTTGG-GAGG 885
||||| ||||| |||||||| ||| | |||| ||| | | || |||||| | || ||||
Sbjct 943 AGGTTCGAGGCGAAACAGAG-AAAGTTGATG-AATGAGTATGAGTTTGATCT-GGAGAGG 999
Query 886 TACGATGAGCTGAAGAAGCTGTTTAA-TCCCAAGCCTTCAGG-TGC-TGTTTCCAAGATT 942
|| |||| ||||||||||||||| || |||||||| || | | |||||||||||||
Sbjct 1000 TATAATGAACTGAAGAAGCTGTTTTGCTCT-AAGCCTTC-GGAT-CATGTTTCCAAGATT 1056
Query 943 CTTGGA 948
||||||
Sbjct 1057 CTTGGA 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5