BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353186
Length=2256
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36550.1 | Symbols: | ARM repeat superfamily protein | chr4... 2344 0.0
> AT4G36550.1 | Symbols: | ARM repeat superfamily protein | chr4:17245400-17248461
REVERSE LENGTH=2600
Length=2600
Score = 2344 bits (1269), Expect = 0.0
Identities = 1514/1630 (93%), Gaps = 26/1630 (2%)
Strand=Plus/Plus
Query 641 AAAGAATCATTTGTGCAGATCACAAAGAGAATTCTTTTTCACATCATCA-CCCGATCGAT 699
||| ||||||||||| |||||||||| |||| || || | |||||||| || ||||||
Sbjct 983 AAA-AATCATTTGTGAAGATCACAAACAGAACTCCTTCACGCATCATCAGTCC-ATCGAT 1040
Query 700 GATTCTCTGCGTGCTAATGCTGCGGAAGCTGAGGGTTCTGAGGAACACAATGGTACACTT 759
|||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1041 GATTCTCTGCATGCTAATGCTGCAGAAGCTGAGGCTTCTGAGGAACACAATGGTACACTT 1100
Query 760 CCCGAGCAATTTAAATGCCCGCTTTCTCTTACCGTGATGTATGATCCAGTCATCATTTCC 819
|| ||| ||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1101 CCTGAGAAATTTAAGTGCACGCTTTCTCGTACCGTGATGTATGATCCAGTCATCATCTCC 1160
Query 820 TCAGGCCACACTTTTGAGAGGATGCAGATTCAGAATTGGTTCGATGAAGGTAATGATTCT 879
|||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1161 TCAGGCAACACCTTTGAGAGGATGCAGATTCAGAAATGGTTCGATGAAGGTAATGATTCT 1220
Query 880 TGTCCTATATC-AAGAAGGAAACTGAATGACTTCGCATTGGAGCCTAATGTAGCGCTTAA 938
||||||||||| || |||||||||| |||||||| ||||| |||||||||||| ||||||
Sbjct 1221 TGTCCTATATCTAA-AAGGAAACTGGATGACTTCACATTGAAGCCTAATGTAGAGCTTAA 1279
Query 939 GATTCAGATATCAAAATGGTGCGCGAGGAACGGTCTTCATGTTCAAGATCCAGCGACGAA 998
|| |||||||||| |||||||||||| |||||||||| |||||||||||||||||| |||
Sbjct 1280 GAGTCAGATATCAGAATGGTGCGCGAAGAACGGTCTTGATGTTCAAGATCCAGCGAGGAA 1339
Query 999 GCACCCAAAGGCTTCCAACAGTATCGACTTCTCTGTTTCCATCGCTAGTTTCGGAAGTTC 1058
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 GCACGTAAAGGCTTCCAACAGTATCGACTTCTCTGTTTCCATCGCTAGTTTCGGAAGTTC 1399
Query 1059 TCTGTACAATATCCCAGATCTCAGCGGCCTTTCGATTACGGATTTAAACTTGAGCTATTC 1118
||||||||| ||||| |||| ||||||| |||||||||||||||| |||| |||||||||
Sbjct 1400 TCTGTACAACATCCCTGATCACAGCGGCATTTCGATTACGGATTTCAACTCGAGCTATTC 1459
Query 1119 CATTGATTCGTCATCCTACTCTAAGATGTCAAAGGGTGGTTACTTCATTCCAATGCAGAG 1178
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1460 CATTGATTCGTCATCCTACTCTAAGATGTCAAAGGGTGGTTACTTCACTCCAATGCAGAG 1519
Query 1179 GATAGATTCTGCTTCAGGCGCTGGTGAAGGTGACACAGATTCTAGTCACAGCGATATTGA 1238
||||||||||||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct 1520 GATAGATTCTGCTTCAGGCGC---T---GGTGACACAGATTCTAGTCACAGCGAGATTGA 1573
Query 1239 GATAGATCCCTTGTGTGGACTCACTAACCTTCCATGGGATGCGCAGATCAAGGTCATCGA 1298
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 1574 GATAGATCCCTTGTGTGGACTCACAAACCTTCCATGGGATGCGCAGATCAAAGTCGTCGA 1633
Query 1299 AGATGTAAGAAGTCGTTTTGAGCACAGTACTCGGGCTTTTCGGTCTATGTCACCGAGTAA 1358
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1634 AGATGTAAGAAGTCGTTTTGAGCACAGTACTCGTGCTTTTCGGTCTATGTCACCGAGTAA 1693
Query 1359 ATTTCTTGAACCACTTATCACATATCTGAAGAATGCTCTCGAAAGAAATGGCACCGCGGG 1418
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1694 ATTTCTTGAGCCACTTATCACATATTTGAAGAATGCTCTCGAAAGAAATGGCACCGCTGG 1753
Query 1419 AGACATAATAAAGGGTGGATTGGATTTGTTGTTGGCTTTCCTTAGTGGAAATAGGAGGGC 1478
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1754 AGAGATAATAAAGGGTGGATTGGATTTGTTGCTGGCTTTCCTTAGTGGAAATAGGAGAGC 1813
Query 1479 TATAGAATATTTGGAAGAAGAGGTTTTCAAAATGTTCTCAGTCTTTCTCGAGTCTGAGGT 1538
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1814 TATAGAATCTTTGGAAGAAGAGGTTTTCAAAATGTTCTCAGTCTTTCTTGAGTCTGAGGT 1873
Query 1539 AGTAGCTGAAGAAGCTTTGAACATAATTGAGGTTCTCTCCAACCATCCGCACGGTCCCTC 1598
|||||||||||||||| | |||||| |||||||||| || ||||||||||||||||| ||
Sbjct 1874 AGTAGCTGAAGAAGCTCTAAACATACTTGAGGTTCTGTCAAACCATCCGCACGGTCCGTC 1933
Query 1599 CAAGATAACTTCATCAGGCTCTCTTTCTTCCCTTTTGAGGATCGTAGAGTCTCAAGCAGA 1658
|||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1934 CAAGATAACTTCATCAGGATCTCTTTCTTCCCTTTTGAAGATCGTAGAGTCCCAAGCAGA 1993
Query 1659 ACATCTCCAAGAACAAGCTATGATCACACTCAAGAATCTTTCATCAAGCATTGAAATTTG 1718
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1994 ACATCTCCAAGAACAGGCTATGATCACACTCAAGAATCTTTCATCAAGCATGGAGATTTG 2053
Query 1719 TCCGGAAATGGTATCTCTAGATTTCATCCAGAAGCTCACATCTTTCTTGCAACAAAAAGT 1778
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2054 TCTGGAAATGGTATCTCTCGATTTCATCCAGAAGCTCACATCTTTCTTGCAACAAAAAGT 2113
Query 1779 TTTCTGCAAACAATCGATTATCATTCTGAAAAACCTCTGCAGCACTGAGAAAGGTCGGGT 1838
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2114 TTTCTGCAAACACTCGATTATCATTCTGAAAAACCTCTGCAGCACCGAGAAAGGTCGGGG 2173
Query 1839 TTATATCACCGAAACCCCGGATTGTTTAGCTTCCATAGCTGAATTACTCGATTCAAATGT 1898
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2174 TTGTATCACCGAAACCCCGGATTGTTTAGCTTCCATAGCTGAATTACTCGAGTCAAATGT 2233
Query 1899 TCCCGAGGAGCAAGAGAATGCAATCTACACCCTCCTTCAGCTCTGTACGCAGAAGATAGA 1958
|||||||||||||||||| ||||||| || |||||||||||||||| ||||||||||||
Sbjct 2234 TCCCGAGGAGCAAGAGAACGCAATCTCCATCCTCCTTCAGCTCTGTGTGCAGAAGATAGA 2293
Query 1959 GTATTGCTGTCTTGTCGTGAGAGAAGCAACTGATATTTACTCATCTCTAATCTTGATAAC 2018
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2294 GTATTGCTGTCTTGTCGTGAGAGAAGCAACTGATATTTACTCATCTCTAATCTTGATATC 2353
Query 2019 CAAAAATGGAACAGAGGAAGCAAAAGGGG-GTGCATCGGAATTGCTTAGAGCTCTTGAAG 2077
||| |||||||||||||||| ||| || | ||||||| ||||| ||||||||||||| ||
Sbjct 2354 CAACAATGGAACAGAGGAAGTAAA-GGTGAGTGCATCAGAATTACTTAGAGCTCTTGTAG 2412
Query 2078 AAGTAGATTCCGACA--GA-GAAGAAGAA----T--CCTCCAGACCAGAAG-AAGAAACA 2127
||||||||||||||| || ||||||||| | ||||||||||||||| ||||| ||
Sbjct 2413 AAGTAGATTCCGACAAAGAAGAAGAAGAAGAAGTTTCCTCCAGACCAGAAGGAAGAA-CA 2471
Query 2128 ACTGCTTCGACTACTTTACAGGTTGTTACTCCAGTTACTCATCAAGAACCTATTAAAATA 2187
||||||||| |||||| |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 2472 ACTGCTTCGCCTACTTCACAGGTTGTTACTCCAGTTACTCATCCGGAACCTGTTAAAATA 2531
Query 2188 ACACCATC-CCCaaaaaaaTCTGGTCGTTTTGGATTCAATTTCTCCAGTCTCATGAAGAA 2246
|||||||| ||||| ||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2532 ACACCATCTCCCAAGAAA-TCTGGTCTTTTTGGATTCAATTTCTCCAGTCTCAAGAAGAA 2590
Query 2247 GAAAAAATAG 2256
||||||||||
Sbjct 2591 GAAAAAATAG 2600
Score = 756 bits (409), Expect = 0.0
Identities = 498/542 (92%), Gaps = 2/542 (0%)
Strand=Plus/Plus
Query 1 ATGAGGATTGATTACACAGAACGGATGCCTCAATCCTATAAGATGCACTCTTCCATGTGC 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 ATGAGGATCGATTACACAGAACGGATGCCTCAATCCTATAAGATGCACTCTTCCATGTGC 503
Query 61 TTAGAATTGAAGAAGTTTGTTGATAGAATCATGAGAATCTTTCCTGATATAGAAGATGCT 120
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 TTAGAATTGAAGAGGCTAGTTGATAGAATCATGAGAATCTTTCCTGATATAGAAGATGCT 563
Query 121 CGACCTGGATGCTCCTCAGGGATACAGACTCTTTGTTTACTCCACA-TAGCTTTGGATAG 179
|||||||||||||| || |||||||||||||||||||||||||||| | ||||||||||
Sbjct 564 CGACCTGGATGCTCTTCCGGGATACAGACTCTTTGTTTACTCCACAAT-GCTTTGGATAA 622
Query 180 AGCTAAGCAGCTTCTTCAATATTGCAGTGAATCCAGTAAACTCTACATGGCGGTAACAGG 239
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 623 AACTAAGCAGCTTCTTCAATATTGCAGTGAATCCAGTAAACTCTACATGGCAGTAACAGG 682
Query 240 AGATGCTAGACTCTCAAGAGGTTCTAGAGCCAAAAAATCATTAGAGCAATGCTTAAACGA 299
|||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 683 AGATGCTATACTCGCAAGAGGTTCTAGAGCTAAAAAATCATTAGAGCAATGCTTAAACGA 742
Query 300 CATTCGAAGTATGGTACCGACTATTTTGGATACCAAGATATCTCAGATAGTCCAAGACCT 359
|||| ||||||| ||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 743 CATTAGAAGTATAGTACCAACTATTTTGGAGATCAAGATATCTCAGATAGTCCAAGACCT 802
Query 360 TAGATCAACTGTGTTTACTGTAGAATTCTCTGAAGAAGCAGCTGGGAAAACTATTAGAGA 419
||||||||| ||| ||| |||||||||| ||||||| |||||||||| ||||||||||
Sbjct 803 TAGATCAACACAGTTGACTCTAGAATTCTCGGAAGAAGAAGCTGGGAAAGCTATTAGAGA 862
Query 420 ATTGATGCGACCCAGCACTTCTTCTTCTGTTTCTCCGGATGAGATTAGAGATTTCCATTT 479
|||||||| | ||||| ||||| |||| ||||||||||||||| | |||||| ||||
Sbjct 863 ATTGATGCAAAAGAGCACGTCTTCCTCTGCTTCTCCGGATGAGATAAAAGATTTTCATTA 922
Query 480 TGCAGCATTGAAACTCCAACTTTCAACACCTGAAGCCATTGTGACAGAGAGAACATCTTT 539
||| || || |||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 923 TGCTGCGTTAAAACTCCAACTTTCAACACCTGAAGCTATTGTGACAGAGAGAAGATCCTT 982
Query 540 AA 541
||
Sbjct 983 AA 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111947215350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5