BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353240
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35890.1 | Symbols: | winged-helix DNA-binding transcriptio... 2202 0.0
> AT4G35890.1 | Symbols: | winged-helix DNA-binding transcription
factor family protein | chr4:16997139-17000833 FORWARD LENGTH=2289
Length=2289
Score = 2202 bits (1192), Expect = 0.0
Identities = 1469/1597 (92%), Gaps = 41/1597 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTCCGCCACTTCCAATAACTCTGCTTCTTCTTCTATGTCCCCTCGTCGTATCAGC 60
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 295 ATGGCTTCCGCCACTTCCAATAACCCTGCTTCTTCTTCTATGTCTCCTCGTCGTATCAGC 354
Query 61 GAGAATCACGGCAGCCCTATCGCTGCCGTATCACAATCGCCTCGCCGTCCTTCTCGGCAG 120
| ||||||||||||||| | |||| ||||| ||||||| |||||||||||||||||||||
Sbjct 355 GGGAATCACGGCAGCCCCACCGCTTCCGTAGCACAATCACCTCGCCGTCCTTCTCGGCAG 414
Query 121 GTTTCTTCTCCGTGGACTCAAATCGTCCGCGGCGAATCAGAGCCGATCGCCGCCGCCGCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GTTTCTTCTCCGTGGACTCAAATCGTCCGCGGCGAATCAGAGCCGATCGCCGCCGCCGCC 474
Query 181 GCTGCAGCTGGTCCTTCCTCTCCTCAATCCAGGGCTCCGATCGAGCCGATTGCTTCTGTA 240
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GCTGTAGCCGGTCCTTCCTCTCCTCAATCCAGGGCTCCGATCGAGCCGATTGCTTCTGTA 534
Query 241 TCCGTTGCTGCTCCACCTGCTTCTGTTTTGACGGTGGAGGCGGCGGCCGGTGATGAGAAA 300
||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 535 TCCGTTGCTGCTCCAACTGCTGCTGTTTTGACGGTGGAGGCGGCGGCTGGTGATGAGAAA 594
Query 301 TCGGAAGAATCTGGTGGTCAGGGCAATGCAGGAAAGAAACCAGTTTGGAAAAGGCCGTCT 360
||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 595 TCGGAAGCATCTGGTGGTCAGGACAATGCTGGAAAGAAACCAGTTTGGAAAAGGCCGTCT 654
Query 361 AATGGGGCTTCTGAGGTTGGACCTGTCATGGGAGCTTCGTCGTGGCCTGCTCTTTCTGAG 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 655 AATGGGGCTTCTGAGGTTGGACCTGTCATGGGAGCTTCTTCGTGGCCTGCTCTTTCTGAG 714
Query 421 ACCACCAAAGCTTCTTCGAACAAGTCTTCTTCTGATTCGTTAAAAAGTCTCGGTGATGTT 480
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ACCACCAAAGCTCCTTCCAACAAGTCTTCTTCTGATTCGTTAAAAAGTCTCGGTGATGTA 774
Query 481 Ccatcatcatc---agcatcatcatcTGTCCCCGTTTCTCAGGGAATTGCAAATGCTTCT 537
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 775 CCATCATCATCGTCAGCATCATCATCTGTCCCCGTTACTCAGGGAATTGCAAATGCTTCT 834
Query 538 GTTACTGCTCCAAAGCAAGCTAGCCGTGCAAACCCTAATCCAACTCAAAATCACTCGCGC 597
||| |||| |||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 835 GTTCCTGCACCAAAGCAAGCTGGCCGTGCAAACCCTAATCCAACTCCAAATCACTCGCGC 894
Query 598 CAGCGATCATTTAAAC---GCAATGGTGCATCTGGATCTGCTAATGGTACTGTTTCTCAA 654
||| |||||||||||| ||||||| || |||||||| |||||||||||||||||||||
Sbjct 895 CAGAGATCATTTAAACAACGCAATGGCGCCTCTGGATCAGCTAATGGTACTGTTTCTCAA 954
Query 655 CCATCAGCGCAGGGTTCATTTGCGGAATTGCCTTCGCACAACCCTTCTCCTAGAGGCCAA 714
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 955 CCATCAGCGCAGGGTTCATTTACCGAATTGCCTTCGCACAACCCTTCTCCTAGAGGCCAA 1014
Query 715 AACCAGAAGAATGGCTTTGCGTCACACAACCATGGTGGTATTGAAAACCTATCTCAACGA 774
|||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct 1015 AACCAGAAGAATGGCTTTGCGTCACAAAACCATGGTGGTACTGAAAACCCATCTCAACGA 1074
Query 775 GACTCCAACAGGAACCAAAACGGTCATCATCACCAAAGTCATGGTGGCAGGCGCAATCAG 834
|||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1075 GACTCCTACAGGAACCAAAACGGTAATCATCACCAAAGTCACGGTGGCAGGCGCAATCAG 1134
Query 835 GAGCACGGGAATCAAAATTGGACTTTTCAAAGAAGCTTTAATGGGAGAGAAGGAAATGCA 894
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1135 GAGCACGGGAATCAAAATTGGACTTTTCAAAGAAGTTTTAACGGGAGAGAAGGAAATGCG 1194
Query 895 CAATCGCAAAGAGGTATTCCAGCATTTGTAAGACATGCACCACCACCTATGCAGCCAATT 954
|||||||||||||||| |||||| |||||||||||| || ||||| || |||||||||||
Sbjct 1195 CAATCGCAAAGAGGTACTCCAGCTTTTGTAAGACATCCATCACCAACTGTGCAGCCAATT 1254
Query 955 CCTCCTCAGTTTATGGCAGCTCAGCCTATTC--AGTCTTTTGGTGTGCCCTTTCCTGCTG 1012
|||| |||||||||||||||||||| ||| |||| | | ||||| ||| |||
Sbjct 1255 CCTC---AGTTTATGGCAGCTCAGCCTTTTCCCAGTCATATA-----CCCTTCCCTACTG 1306
Query 1013 AATTGGCATC-GTCGGGGCCGTATTATCCTCATATGCCACCTTTCATGACACCTCTTCCG 1071
|||||||| | |||| | ||||||||| | |||||| || |||||||||| |||||
Sbjct 1307 AATTGGCA-CAGTCGT--C-GTATTATCCCCGTATGCC---TTACATGACACCTATTCCG 1359
Query 1072 CATGGTCCG--GT-CTTCTACCATGT-TCAAGATCCTCCACTACACATGAAACTACATAA 1127
||||||||| || |||||||||| | |||||||||||| ||||||||||||| |||||
Sbjct 1360 CATGGTCCGCAGTTCTTCTACCAT-TATCAAGATCCTCCGTTACACATGAAACTGCATAA 1418
Query 1128 TCAAATACAATATTATTTTAGTGATGATAATTTGATTACAGACATATACCTTCGCGGGTT 1187
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1419 GCAAATACAATATTATTTTAGTGATGAAAATTTGATTACAGACATATACCTTCGAGGGTT 1478
Query 1188 CATGAATGAAC-AGGGTTTTGTTCCGCTACGTGTGGTTGCTGGTTTCAAAAAGGTTGCAG 1246
||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1479 CATGAAT-AATGAGGGTTTTGTTCCGCTACGTGTGGTAGCTGGTTTCAAAAAGGTTGCAG 1537
Query 1247 AACTTACAGATAGTATCCAGCAAATAGTGGAGGCTCTACAAAATTCACCTTC-TGTTGAA 1305
|||||||||||| ||||||||| |||||||||||||| |||||||||||| | |||||||
Sbjct 1538 AACTTACAGATAATATCCAGCAGATAGTGGAGGCTCTTCAAAATTCACCT-CATGTTGAA 1596
Query 1306 GTGCAGGGTGAAT-CAATAAGGAAGCGCCATAATTGGCAAAATTGGTTGCTTCCTAGAAT 1364
||||||||||| | || ||||||||||| ||||||||||||||||| |||| ||
Sbjct 1597 GTGCAGGGTGACTTCA-TAAGGAAGCGCGATAATTGGCAAAATTGGGTGCTA---AG--- 1649
Query 1365 GAGGATCCCTGCAGTTTCTAGCCCCCAATCTGGTGATAGGGCAGATGCTGTGGCAAAACG 1424
||||| |||| ||| ||| |||||||||||| ||||||||||||||| |||||||||||
Sbjct 1650 GAGGAACCCTACAGGTTCCGGCCCCCAATCTGTTGATAGGGCAGATGCAGTGGCAAAACG 1709
Query 1425 ACTTGGAAACTTGTCGGTTGATCAGAGCTCGGCTGATCCCATTGGTGGTTCGAGCAGTCA 1484
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1710 ACTTGGAAACTTGTCAGTTGATCAGAGTTCGGCTGATCCCATTGGTGGTTCGAGCAGTCA 1769
Query 1485 GTTGCAACCTACAGAAGCTCTTTCAGATGATCAGCAACAGTCTTCTGGTGCTGCTTCAGT 1544
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1770 GTTGCAACCTACAGAAGCTCTTTCAGATGATCAGCAACAGTCTTCTAGTACTGCTCCAGT 1829
Query 1545 GAGCAACCACAACGACCTGGATGGTGCAAACCGTTGA 1581
|||||||||||||| || ||||||||||||||||||
Sbjct 1830 GAGCAACCACAACGCCCCAGATGGTGCAAACCGTTGA 1866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78061847475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5