BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353278
Length=384
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33270.1 | Symbols: CDC20.1 | Transducin family protein / WD... 420 5e-117
AT4G33260.1 | Symbols: CDC20.2 | Transducin family protein / WD... 398 3e-110
AT5G27570.1 | Symbols: | Transducin/WD40 repeat-like superfami... 327 3e-89
AT5G27945.1 | Symbols: | Transducin/WD40 repeat-like superfami... 320 6e-87
AT5G26900.1 | Symbols: | Transducin family protein / WD-40 rep... 315 3e-85
AT5G27080.1 | Symbols: | Transducin family protein / WD-40 rep... 303 6e-82
> AT4G33270.1 | Symbols: CDC20.1 | Transducin family protein /
WD-40 repeat family protein | chr4:16044352-16046792 REVERSE
LENGTH=1769
Length=1769
Score = 420 bits (227), Expect = 5e-117
Identities = 259/274 (95%), Gaps = 3/274 (1%)
Strand=Plus/Plus
Query 101 GTGGTGGTGGAGGAGATAGGAAGATCAAATTCTGGAATACTCACACTGGGGCTTGCTTGA 160
|||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1200 GTGGTGGTGGAGGAGACAGGACGATCAAGTTCTGGAATACTCACACTGGGGCTTGCTTGA 1259
Query 161 ATTCAGTAGACACTGGCTCTCAAGTTTGTTCGTTGTTGTGGAGCAAGAATGAAACAGAGT 220
|||||||||||||||| || ||||||||||||||||| |||||||||||||||| |||||
Sbjct 1260 ATTCAGTAGACACTGGTTCCCAAGTTTGTTCGTTGTTATGGAGCAAGAATGAAAGAGAGT 1319
Query 221 TGCTTAGCTCACACGGGTTTACACAGAATCAGCTCACACTTTGGAAGTATGATCCATCCA 280
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1320 TGCTTAGCTCACACGGGTTTACACAGAATCAGCTCACACTTTGGAAGTAT---CCATCCA 1376
Query 281 TGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTGTATATGGCCCAGATTC 340
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1377 TGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAGAGTC 1436
Query 341 CTGATGGTTGTACCGTAGCTTCAGCACCAGCAGA 374
| |||||||||||||||||||||||| ||| |||
Sbjct 1437 CAGATGGTTGTACCGTAGCTTCAGCAGCAGGAGA 1470
> AT4G33260.1 | Symbols: CDC20.2 | Transducin family protein /
WD-40 repeat family protein | chr4:16041067-16043411 REVERSE
LENGTH=1741
Length=1741
Score = 398 bits (215), Expect = 3e-110
Identities = 258/278 (93%), Gaps = 5/278 (2%)
Strand=Plus/Plus
Query 101 GTGGTGGTGGAGGAGATAGGAAGATCAAA-TTCTGGAATACTCACACTGGGGCTTGCTTG 159
|||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 1199 GTGGTGGTGGAGGAGACAGGACGAT-AAAGTTCTGGAATACTCACACTGGGGCTTGCTTG 1257
Query 160 AATTCAGTAGACACTGGCTCTCAAGTTTGTTCGTTGTTGTGGAGCAAGAATGAAACAGAG 219
||||||||||||||||| || ||||||||||||||||| |||||||||||||||| ||||
Sbjct 1258 AATTCAGTAGACACTGGTTCCCAAGTTTGTTCGTTGTTATGGAGCAAGAATGAAAGAGAG 1317
Query 220 TTGCTTAGCTCACACGGGTTTACACAGAATCAGCTCACACTTTGGAAGTATGATCCATCC 279
|||||||||||||| |||||||||||||||||||| |||||||||||| | | ||||||
Sbjct 1318 TTGCTTAGCTCACATGGGTTTACACAGAATCAGCTTACACTTTGGAAG--T-ACCCATCC 1374
Query 280 ATGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTGTATATGGCCCAGATT 339
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1375 ATGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAGAGT 1434
Query 340 CCTGATGGTTGTACCGTAGCTTCAGCACCAGCAGACGA 377
|| ||||||||||| |||||||||||| ||| ||||||
Sbjct 1435 CCAGATGGTTGTACTGTAGCTTCAGCAGCAGGAGACGA 1472
> AT5G27570.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:9734896-9736131 REVERSE LENGTH=1236
Length=1236
Score = 327 bits (177), Expect = 3e-89
Identities = 238/267 (89%), Gaps = 5/267 (2%)
Strand=Plus/Plus
Query 101 GTGGTGGTGGAGGAGATAGGAAGATCAAATTCTGGAATACTCACACTGGGGCTTGCTTGA 160
||||||||| ||| ||| ||||||| || ||||||||||| |||||||||||||||||||
Sbjct 857 GTGGTGGTGTAGGTGATGGGAAGATTAAGTTCTGGAATACACACACTGGGGCTTGCTTGA 916
Query 161 ATTCAGTAGACACTGGCTCTCAAGTTTGTTCGTTGTTGTGGAGCAAGAA-TGAAACAGAG 219
|||||||||| |||||||||||||||||||| ||||| |||||||| || ||||| ||||
Sbjct 917 ATTCAGTAGAAACTGGCTCTCAAGTTTGTTCATTGTTATGGAGCAA-AAGTGAAAGAGAG 975
Query 220 TTGCTTAGCTCACACGGGTTTACACAGAATCAGCTCACACTTTGGAAGTATGATCCATCC 279
|||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||
Sbjct 976 TTGCTTAGCTCACATGGGTTTACACAGAACCAGCTTACACTTTGGAAGTAC---CCATCT 1032
Query 280 ATGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTGTATATGGCCCAGATT 339
||||||||||||||||| |||| ||||||||||||||||||||| | |||||| |||| |
Sbjct 1033 ATGGTGAAAATGGCTGAACTCAATGGTCATACATCAAGAGTTCTTTTTATGGCACAGAGT 1092
Query 340 CCTGATGGTTGTACCGTAGCTTCAGCA 366
|| |||||||||||||| ||||| |||
Sbjct 1093 CCGGATGGTTGTACCGTGGCTTCTGCA 1119
> AT5G27945.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:9976007-9977601 FORWARD LENGTH=1287
Length=1287
Score = 320 bits (173), Expect = 6e-87
Identities = 244/278 (88%), Gaps = 5/278 (2%)
Strand=Plus/Plus
Query 101 GTGGTGGTGGAGGAGATAGGAAGATCAAATTCTGGAATACTCACACTGGGGCTTGCTTGA 160
||||||||| |||||| ||||||| || ||||||||||| |||||||||||||||||||
Sbjct 908 GTGGTGGTGTTGGAGATGGGAAGATTAACTTCTGGAATACACACACTGGGGCTTGCTTGA 967
Query 161 ATTCAGTAGACACTGGCTCTCAAGTTTGTTCGTTGTTGTGGAGCAAGAA-TGAAACAGAG 219
|||||||||| |||||||||||||| ||||| ||||| |||||||| || ||||| ||||
Sbjct 968 ATTCAGTAGAAACTGGCTCTCAAGTATGTTCATTGTTATGGAGCAA-AAGTGAAAGAGAG 1026
Query 220 TTGCTTAGCTCACACGGGTTTACACAGAATCAGCTCACACTTTGGAAGTATGATCCATCC 279
||||||||| |||| |||||||| ||||| ||||| |||||||||||||| |||||
Sbjct 1027 TTGCTTAGCGCACATGGGTTTACGCAGAACCAGCTTACACTTTGGAAGTAC---CCATCT 1083
Query 280 ATGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTGTATATGGCCCAGATT 339
||||||||||||||||| |||| ||||||||||||||||||||| | |||||| |||| |
Sbjct 1084 ATGGTGAAAATGGCTGAACTCAATGGTCATACATCAAGAGTTCTTTTTATGGCACAGAGT 1143
Query 340 CCTGATGGTTGTACCGTAGCTTCAGCACCAGCAGACGA 377
|| |||||||||||||| ||||||||| ||| |||||
Sbjct 1144 CCGGATGGTTGTACCGTGGCTTCAGCAGCAGGTGACGA 1181
> AT5G26900.1 | Symbols: | Transducin family protein / WD-40 repeat
family protein | chr5:9463752-9465086 FORWARD LENGTH=1335
Length=1335
Score = 315 bits (170), Expect = 3e-85
Identities = 245/280 (88%), Gaps = 9/280 (3%)
Strand=Plus/Plus
Query 101 GTGGTGGTGGAGGAGATAGGAAGATCAAATTCTGGAATACTCACACTGGGGCTTGCTTGA 160
||||||||| ||||||| ||||||| || ||||||||||| |||||||||||||||||||
Sbjct 956 GTGGTGGTGTAGGAGATGGGAAGATTAAGTTCTGGAATACACACACTGGGGCTTGCTTGA 1015
Query 161 ATTCAGTAGACACTGGCTCTCAAGTTTGTTCGTTGTTGTGGAGCAAGAA-TGAAACAGAG 219
|||||||||| |||||||||||||||||||| || || |||||| | || ||||| ||||
Sbjct 1016 ATTCAGTAGAAACTGGCTCTCAAGTTTGTTCATTATTATGGAGCCA-AAGTGAAAGAGAG 1074
Query 220 TTGCTTAGCTCACACGGGTTTACACAGAATCAGCTCACACTTTGGAAGTATGATCCATCC 279
|||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1075 TTGCTTAGCTCACATGGGTTTACACAGAACCAGCTTACACTTTGGAAGTAC---CCATCT 1131
Query 280 ATGGT-GAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTGTATATGGCCCAGAT 338
||| | |||||||||||| |||| ||||||||||||||||||||||| |||||| ||||
Sbjct 1132 ATG-TCGAAAATGGCTGAACTCAATGGTCATACATCAAGAGTTCTGTTTATGGCACAGAG 1190
Query 339 TCCTGA-TGGTTGTACCGTAGCTTCAGCACCAGCAGACGA 377
||| || |||||||||||| ||||| ||| ||| |||||
Sbjct 1191 TCC-GAATGGTTGTACCGTGGCTTCTGCAGCAGGTGACGA 1229
> AT5G27080.1 | Symbols: | Transducin family protein / WD-40 repeat
family protein | chr5:9529603-9531081 REVERSE LENGTH=1401
Length=1401
Score = 303 bits (164), Expect = 6e-82
Identities = 243/280 (87%), Gaps = 9/280 (3%)
Strand=Plus/Plus
Query 101 GTGGTGGTGGAGGAGATAGGAAGATCAAATTCTGGAATACTCACACTGGGGCTTGCTTGA 160
||||||||| ||||||| ||||||| || ||||||||||| |||||||||||||||||||
Sbjct 950 GTGGTGGTGTAGGAGATGGGAAGATTAAGTTCTGGAATACACACACTGGGGCTTGCTTGA 1009
Query 161 ATTCAGTAGACACTGGCTCTCAAGTTTGTTCGTTGTTGTGGAGCAAGAATG-AAACAGAG 219
|||||||||| |||||||||||||||||||| || | |||||| | || | ||| ||||
Sbjct 1010 ATTCAGTAGAAACTGGCTCTCAAGTTTGTTCATTACTATGGAGCCA-AAGGGAAAGAGAG 1068
Query 220 TTGCTTAGCTCACACGGGTTTACACAGAATCAGCTCACACTTTGGAAGTATGATCCATCC 279
|||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1069 TTGCTTAGCTCACATGGGTTTACACAGAACCAGCTTACACTTTGGAAGTAC---CCATCT 1125
Query 280 ATGGT-GAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTGTATATGGCCCAGAT 338
||| | |||||||||||| |||| ||||||||||||||||||||||| |||||| ||||
Sbjct 1126 ATG-TCGAAAATGGCTGAACTCAATGGTCATACATCAAGAGTTCTGTTTATGGCACAGAG 1184
Query 339 TCCTGA-TGGTTGTACCGTAGCTTCAGCACCAGCAGACGA 377
||| || |||||||||||| ||||| ||| ||| |||||
Sbjct 1185 TCC-GAATGGTTGTACCGTGGCTTCTGCAGCAGGTGACGA 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18096389640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5