BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg353299

Length=1038
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17265.1 | Symbols: HSK, DMR1 | homoserine kinase | chr2:750...   215    8e-55


> AT2G17265.1 | Symbols: HSK, DMR1 | homoserine kinase | chr2:7508588-7509755 
FORWARD LENGTH=1168
Length=1168

 Score =  215 bits (116),  Expect = 8e-55
 Identities = 203/245 (83%), Gaps = 6/245 (2%)
 Strand=Plus/Plus

Query  787   GTGGAGCCGAAGAGAGCACCATTGATTCCGGGAATGGAAGCTGTGAAGAAAGCTGCTTTA  846
             ||||||||||  ||||| || ||||||||||||||||||||||||||||| || ||||||
Sbjct  874   GTGGAGCCGACTAGAGCGCCGTTGATTCCGGGAATGGAAGCTGTGAAGAAGGCGGCTTTA  933

Query  847   GAAGCTGGAGCATTTGGTTGCACAATAAGTGGAGCTGGTCCAACGGCGGTTGCAGTGATC  906
             ||||||||||||||||| || || || || |||||||| ||||| |||||||| ||||| 
Sbjct  934   GAAGCTGGAGCATTTGGATGTACTATTAGCGGAGCTGGACCAACAGCGGTTGCGGTGATT  993

Query  907   GACACGGCGGAGAAAGGTTTCGAG--ATCGGAGAGAAAATGGTCGAAGCGTTCTTG-AAG  963
             ||  ||| |||||| |||  | ||  || |||||||| ||||| |||||||| ||| || 
Sbjct  994   GATTCGGAGGAGAAGGGT--CAAGTCATTGGAGAGAAGATGGTGGAAGCGTT-TTGGAAA  1050

Query  964   GTCGGAAACTTGAAATCTATTGCTTCTGTGAAGAAACTTGATAAAATCGGAGCTAGACTT  1023
             || ||  | ||||||||| |||||||||||||||| ||||||||  | || ||||| |||
Sbjct  1051  GTTGGTCATTTGAAATCTGTTGCTTCTGTGAAGAAGCTTGATAATGTTGGTGCTAGGCTT  1110

Query  1024  ATCAA  1028
              ||||
Sbjct  1111  GTCAA  1115



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 50887190911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5