BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353319
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35110.3 | Symbols: | Arabidopsis phospholipase-like protei... 1823 0.0
> AT4G35110.3 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) family | chr4:16712505-16714347 REVERSE LENGTH=1483
Length=1483
Score = 1823 bits (987), Expect = 0.0
Identities = 1105/1163 (95%), Gaps = 4/1163 (0%)
Strand=Plus/Plus
Query 1 ATGGATTTCAATAGAAAAGCTCATCCGGATTGTGTATATGCGGATAATCCTTTCCATGAA 60
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 168 ATGGATTTCAATAGAAAAGCTCATCCAGATTGCGTATATGCGGATAATCCTTTCCATGAA 227
Query 61 TGTGCTTCAGCTTGTTTAGAGAGAATTGCTCAAGGCCATGTCAAGAAGAACACTAAGAAG 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 228 TGTGCTTCAGCTTGTTTAGAGAAAATTGCTCAAGGCCATGTCAAGAAGAACACTAAGAAG 287
Query 121 CAAAGTTCAAGGCTTCTTAGCTTCTCAGGGAGTTTCGGTAGGAAAAAGAAGGAATC-ACA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 288 CAAAGTTCAAGGCTTCTTAGCTTCTCAGGGAGTTTCGGTAGGAAAAAGAAGGAGTCGA-A 346
Query 180 TTCACAACCGCCTTCACCGCTATCCGCAAGGCCTTACCAAAACGGCAGAGGCGGTTTTGC 239
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 347 TTCACAACCGCCTACACCGCTATCCGCAAGGCCTTATCAAAACGGCAGAGGCGGTTTTGC 406
Query 240 AAATAGTAATTCCCCAAAGGTTCATCATTCCGTAGCTCCATCTGTTTCTGTGAAGAAGAA 299
|||| ||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||
Sbjct 407 AAATGGTAATTCCCCAAAGGTTCATCATTCTGTAGCTCCACCTGCTTCCGTGAAGAAGAA 466
Query 300 GATTGTTTCTGAATCGAATAAGTCTTTAACTTCTTCATCATCCGGTGACCCGGATGATTT 359
||||||||||||| |||| || ||||| |||||||||||||||||||| |||||||||||
Sbjct 467 GATTGTTTCTGAAACGAAAAATTCTTTCACTTCTTCATCATCCGGTGATCCGGATGATTT 526
Query 360 CTTCAACCATAAACCGGAGAAGAAACCTTCTCAAACCATTCCACTTTCCTCAAACAATTT 419
||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 527 CTTCAACCATAAACCAGAGAAGAAACCTTCTCAAACCATTCCCCTTTCATCAAACAATTT 586
Query 420 GGTTGATCAAAGCAAAGCCGTATCACCTAAACCTGGAATACAAGAACACGACGGGAAGAT 479
||||||||||||||||| |||||||||||||| ||||||||||||||| | ||||||||
Sbjct 587 GGTTGATCAAAGCAAAGTGGTATCACCTAAACCGGGAATACAAGAACACAATGGGAAGAT 646
Query 480 TGGAGCAGGCGGCGAAACTAGACTCTTTAGTTTCCTAAGCCTTCCAAGATCGCATG-AAG 538
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 647 TGGAGAAGGCGGCGAAACTAGACTCTTTAGTTTCCTAAGCCTTCCAAGATCGCCTGGAA- 705
Query 539 AAGAGAGCAATGATGATTATACTGATGATGATGAAGAAAACAACAATGAGATTGGTGTAG 598
|||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 706 AAGAGAGCAATGATGATTTTTCTGATGATGATGACGAAAACAACAATGAGATTGGTGTAG 765
Query 599 AGCTCGATCTTGAATCAGTAATGTCTGACACTTTTGTCTCTGTCGGAAAATACCGAGTCA 658
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 766 AGCTCGATCTCGAATCAGTAATGTCTGACACTTTTGTCTCTGTCGGGAAATACCGAGTCA 825
Query 659 GATCCGGTTCATCCACAATCCTAAGTGCTATCATCGAAAAACACGGAGACATTGCTCAAA 718
|||| ||||||||||| || ||||||||| |||||||||| |||||||||||||||||||
Sbjct 826 GATCGGGTTCATCCACTATACTAAGTGCTGTCATCGAAAAGCACGGAGACATTGCTCAAA 885
Query 719 ACTGTAAGCTGGAATCGGATTCAATGCGATCCCGTTACCTGGAGTGTTTATGCTCACTGA 778
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 886 ACTGTAAGCTGGAATCGGATTCAATGCGATCACGTTACCTCGAGTGTTTATGCTCACTGA 945
Query 779 TGCAGGAACTCAGGTCAACCCCGGTAGGGCAGTTGAGCAAAATCAAAGTCAAAGAGATGC 838
|||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 946 TGCAGGAACTTAGGTCAACCCCGGTAGGGCAGTTGAGCAAAGTCAAGGTCAAAGAGATGC 1005
Query 839 TTGCGGTTCTCAAAGACTTGGAGTCTGTGAACATCGAAGTGGCTTGGCTACGTTCTGTTC 898
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1006 TTGCGGTTCTCAAAGACTTGGAGTCTGTGAACATTGAAGTAGCTTGGCTACGTTCTGTTC 1065
Query 899 TTGAAGAGTTTGCGCAGTCTCTAGAAGATGCAGAAAATGAGAAAGAGAGGCATGATGGTT 958
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1066 TTGAAGAGTTTGCGCAGTCTCAAGAAGATGTAGAAAATGAGAAAGAGAGGCATGATGGTT 1125
Query 959 TAGTGAAGGCTAAGAAAGAAGAGCTTGAGGCTCAAGAAACGGATTTGGTTAGGATGGAGA 1018
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 TAGTGAAGGCTAAGAGAGAAGAGCTTGAGGCTCAAGAAACGGATTTGGTTAGGATGGAGA 1185
Query 1019 AGGAAGTGGCGGAAGCGAGGCTGCGGATTGAGGAGACGCGGGCTCAGATGGTCGAGATTG 1078
||||||||| ||||| || || |||||||||||||||||||||||||||||| ||||| |
Sbjct 1186 AGGAAGTGGTGGAAGTGAAGCGGCGGATTGAGGAGACGCGGGCTCAGATGGTTGAGATCG 1245
Query 1079 AAGCAGAACGGTCGAGGTTGGAGAAAATGGGATTCAAAATGGAGAAATTTAAAGGGAAAT 1138
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 AAGCAGAACGGTTGAGGATGGAGAAAATGGGATTCAAAATGGAGAAATTTAAAGGGAAAT 1305
Query 1139 CGTTTATAGATGAGCTTCTGTGA 1161
|||||||||||||||||||||||
Sbjct 1306 CGTTTATAGATGAGCTTCTGTGA 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5