BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg353391 Length=984 Score E Sequences producing significant alignments: (Bits) Value AT4G34330.1 | Symbols: | Protein of unknown function (DUF677) ... 414 7e-115 AT4G34320.1 | Symbols: | Protein of unknown function (DUF677) ... 339 4e-92 AT4G34332.1 | Symbols: | other RNA | chr4:16424716-16425890 RE... 303 2e-81 > AT4G34330.1 | Symbols: | Protein of unknown function (DUF677) | chr4:16424713-16425890 FORWARD LENGTH=1065 Length=1065 Score = 414 bits (224), Expect = 7e-115 Identities = 271/293 (92%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 1 ATGGGAAACAAAACAAGCAGAAAGTCAAAGGAGACATCGGCTAGGAACTACACAACGGAA 60 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 1 ATGGGAAACAAAACAAGCAGAAAGTCAAAGGAGAAATCGGGTAGGAACTACACAACGGAA 60 Query 61 CTGAGATCGTACGAGGCTGCATGTAAAGAAGACATGGAGATTCAGTCTTTCGATA-AGCG 119 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || Sbjct 61 CTGAGATCGTACGAGGCTGCATGTAAAGAAGACATGGAGATTCAGTCTTTCGACACA-CG 119 Query 120 TATGCAGGCACGGACGAGTCACGTGATAAGCACGCTACCCACAGGCGTTGAGGTTCGGGC 179 ||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| | Sbjct 120 TATGCAGGCACGGACGAGTCACGTGATAAGCACGCTAGCTACAGGCGTCGAGGTTCGATC 179 Query 180 GCTCTCGTTTGATTCCTTGAAAGTAGTGAC-GGAGAGTTTACTGGACATGAACCAAGAAG 238 |||||||||||||||| |||||| ||||| || |||||||||||||||||||||||||| Sbjct 180 GCTCTCGTTTGATTCCCTGAAAGCAGTGATTGG-GAGTTTACTGGACATGAACCAAGAAG 238 Query 239 TTATGAAAGTGATATTGGATTGCAAGAAAGACAT--GGAAGAATCAAGAAATG 289 | |||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 239 TGGCCAAAGTGATCTTGGATTGCAAGAAAGACATTTGGAAGAATCAAGAAATG 291 > AT4G34320.1 | Symbols: | Protein of unknown function (DUF677) | chr4:16422166-16423948 FORWARD LENGTH=1519 Length=1519 Score = 339 bits (183), Expect = 4e-92 Identities = 263/302 (87%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 300 ACGAGTTCGTGCTAGTCACCTTTCGATTCTTGGTGCTCTCCACCAGTTTGAAGAAGAGAG 359 ||||| ||||| |||||| |||| |||||||| |||||| || ||||||||||| ||||| Sbjct 645 ACGAGCTCGTGATAGTCATCTTTTGATTCTTGTTGCTCTTCAACAGTTTGAAGATGAGAG 704 Query 360 TCTTATTCAATATGGAAACGGATACAAGAAGACACTTGAAGAGCTGAAGAGGTTCAAAGA 419 ||| | ||| ||| ||||||||||||||||||||||||||||| |||| |||||||| Sbjct 705 CCTTGTCCAAGGTGGGAACGGATACAAGAAGACACTTGAAGAGCTAAAGAATTTCAAAGA 764 Query 420 CACAGAGAGACCTTTCGACCAAGACTTCATT-AAGATGTTCCAATCTGTTTACAAGCAGC 478 | ||||||| |||||| || |||||||| || || |||||||||||||||||||| |||| Sbjct 765 CGCAGAGAGTCCTTTCAACGAAGACTTC-TTCAAAATGTTCCAATCTGTTTACAAACAGC 823 Query 479 AGATGCTGATGCTCGAGAAGCTTCAGCTTTGTAAGAAAAAAGCTCGACAAGAAGCTCAAG 538 ||||||||||||||||||||||||||| | |||| ||| ||||| ||||||||||| || Sbjct 824 AGATGCTGATGCTCGAGAAGCTTCAGCATCGTAA-AAACAAGCTTGACAAGAAGCTTAAA 882 Query 539 CGCATCCACACATGGCGAAAAGTCTCCAGCATCATCTTCATGGCTACGTTTGCCACTATG 598 |||||||||||||| ||||| |||||||||||||||| ||||||| ||||||||| || Sbjct 883 TGCATCCACACATGGAGAAAACTCTCCAGCATCATCTTTGTGGCTACCTTTGCCACTGTG 942 Query 599 CT 600 || Sbjct 943 CT 944 Score = 303 bits (164), Expect = 2e-81 Identities = 256/299 (86%), Gaps = 12/299 (4%) Strand=Plus/Plus Query 1 ATGGGAAACAAAACAAGCAGAAAGTCA-AAGGAGACATCGGCT---A--G-GAACTACAC 53 ||||||||| ||||||||| ||||||| || |||||||||||| | | | ||||||| Sbjct 271 ATGGGAAACCAAACAAGCAAAAAGTCACAA-GAGACATCGGCTAAGAGCGTGCACTACAC 329 Query 54 AACGGAACTGAGATCGTACGAGGCTGCATGTAAAGAAGACATGGAGATTCAGTCTTTCGA 113 |||||| |||||||| |||| |||||| || |||| ||||| |||| |||| |||||||| Sbjct 330 AACGGAGCTGAGATCCTACGCGGCTGCGTGCAAAGCAGACACGGAGCTTCAATCTTTCGA 389 Query 114 TAAGCGTATGCAGGCACGGACGAGTCACGTGATAAGCACGCTACCCACAGGCGTTGAGGT 173 | | || |||| |||||||||||||||||||||||||||||| | || || |||||||| Sbjct 390 CACGTGTTTGCAAGCACGGACGAGTCACGTGATAAGCACGCTAGCTACGGGGGTTGAGGT 449 Query 174 TCGGGCGCTCTCGTTTGATTCCTTGAAAGTAGTGACGGAGA-GTTTACTGGACATGAACC 232 ||| ||||||||||| ||||||||||||| ||||||| | | | || |||| ||||||| Sbjct 450 TCGAGCGCTCTCGTTCGATTCCTTGAAAGAAGTGACGCA-ATGCTTGTTGGAGATGAACC 508 Query 233 AAGAAGTTATGAAAGTGATATTGGATTGCAAGAAAGACAT--GGAAGAATCAAGAAATG 289 ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 509 AAGAAGTGGTGAAAGTGATATTGGATTGCAAGAAAGACATTTGGAAGAATCAAGAAATG 567 > AT4G34332.1 | Symbols: | other RNA | chr4:16424716-16425890 REVERSE LENGTH=1058 Length=1058 Score = 303 bits (164), Expect = 2e-81 Identities = 185/195 (95%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 4 GGAAACAAAACAAGCAGAAAGTCAAAGGAGACATCGGCTAGGAACTACACAACGGAACTG 63 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 1058 GGAAACAAAACAAGCAGAAAGTCAAAGGAGAAATCGGGTAGGAACTACACAACGGAACTG 999 Query 64 AGATCGTACGAGGCTGCATGTAAAGAAGACATGGAGATTCAGTCTTTCGATA-AGCGTAT 122 |||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| Sbjct 998 AGATCGTACGAGGCTGCATGTAAAGAAGACATGGAGATTCAGTCTTTCGACACA-CGTAT 940 Query 123 GCAGGCACGGACGAGTCACGTGATAAGCACGCTACCCACAGGCGTTGAGGTTCGGGCGCT 182 |||||||||||||||||||||||||||||||||| | |||||||| |||||||| |||| Sbjct 939 GCAGGCACGGACGAGTCACGTGATAAGCACGCTAGCTACAGGCGTCGAGGTTCGATCGCT 880 Query 183 CTCGTTTGATTCCTT 197 ||||||||||||||| Sbjct 879 CTCGTTTGATTCCTT 865 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48174546973 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5