BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353391
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34330.1 | Symbols: | Protein of unknown function (DUF677) ... 414 7e-115
AT4G34320.1 | Symbols: | Protein of unknown function (DUF677) ... 339 4e-92
AT4G34332.1 | Symbols: | other RNA | chr4:16424716-16425890 RE... 303 2e-81
> AT4G34330.1 | Symbols: | Protein of unknown function (DUF677)
| chr4:16424713-16425890 FORWARD LENGTH=1065
Length=1065
Score = 414 bits (224), Expect = 7e-115
Identities = 271/293 (92%), Gaps = 6/293 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAACAAAACAAGCAGAAAGTCAAAGGAGACATCGGCTAGGAACTACACAACGGAA 60
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1 ATGGGAAACAAAACAAGCAGAAAGTCAAAGGAGAAATCGGGTAGGAACTACACAACGGAA 60
Query 61 CTGAGATCGTACGAGGCTGCATGTAAAGAAGACATGGAGATTCAGTCTTTCGATA-AGCG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 61 CTGAGATCGTACGAGGCTGCATGTAAAGAAGACATGGAGATTCAGTCTTTCGACACA-CG 119
Query 120 TATGCAGGCACGGACGAGTCACGTGATAAGCACGCTACCCACAGGCGTTGAGGTTCGGGC 179
||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| |
Sbjct 120 TATGCAGGCACGGACGAGTCACGTGATAAGCACGCTAGCTACAGGCGTCGAGGTTCGATC 179
Query 180 GCTCTCGTTTGATTCCTTGAAAGTAGTGAC-GGAGAGTTTACTGGACATGAACCAAGAAG 238
|||||||||||||||| |||||| ||||| || ||||||||||||||||||||||||||
Sbjct 180 GCTCTCGTTTGATTCCCTGAAAGCAGTGATTGG-GAGTTTACTGGACATGAACCAAGAAG 238
Query 239 TTATGAAAGTGATATTGGATTGCAAGAAAGACAT--GGAAGAATCAAGAAATG 289
| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 239 TGGCCAAAGTGATCTTGGATTGCAAGAAAGACATTTGGAAGAATCAAGAAATG 291
> AT4G34320.1 | Symbols: | Protein of unknown function (DUF677)
| chr4:16422166-16423948 FORWARD LENGTH=1519
Length=1519
Score = 339 bits (183), Expect = 4e-92
Identities = 263/302 (87%), Gaps = 3/302 (1%)
Strand=Plus/Plus
Query 300 ACGAGTTCGTGCTAGTCACCTTTCGATTCTTGGTGCTCTCCACCAGTTTGAAGAAGAGAG 359
||||| ||||| |||||| |||| |||||||| |||||| || ||||||||||| |||||
Sbjct 645 ACGAGCTCGTGATAGTCATCTTTTGATTCTTGTTGCTCTTCAACAGTTTGAAGATGAGAG 704
Query 360 TCTTATTCAATATGGAAACGGATACAAGAAGACACTTGAAGAGCTGAAGAGGTTCAAAGA 419
||| | ||| ||| ||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 705 CCTTGTCCAAGGTGGGAACGGATACAAGAAGACACTTGAAGAGCTAAAGAATTTCAAAGA 764
Query 420 CACAGAGAGACCTTTCGACCAAGACTTCATT-AAGATGTTCCAATCTGTTTACAAGCAGC 478
| ||||||| |||||| || |||||||| || || |||||||||||||||||||| ||||
Sbjct 765 CGCAGAGAGTCCTTTCAACGAAGACTTC-TTCAAAATGTTCCAATCTGTTTACAAACAGC 823
Query 479 AGATGCTGATGCTCGAGAAGCTTCAGCTTTGTAAGAAAAAAGCTCGACAAGAAGCTCAAG 538
||||||||||||||||||||||||||| | |||| ||| ||||| ||||||||||| ||
Sbjct 824 AGATGCTGATGCTCGAGAAGCTTCAGCATCGTAA-AAACAAGCTTGACAAGAAGCTTAAA 882
Query 539 CGCATCCACACATGGCGAAAAGTCTCCAGCATCATCTTCATGGCTACGTTTGCCACTATG 598
|||||||||||||| ||||| |||||||||||||||| ||||||| ||||||||| ||
Sbjct 883 TGCATCCACACATGGAGAAAACTCTCCAGCATCATCTTTGTGGCTACCTTTGCCACTGTG 942
Query 599 CT 600
||
Sbjct 943 CT 944
Score = 303 bits (164), Expect = 2e-81
Identities = 256/299 (86%), Gaps = 12/299 (4%)
Strand=Plus/Plus
Query 1 ATGGGAAACAAAACAAGCAGAAAGTCA-AAGGAGACATCGGCT---A--G-GAACTACAC 53
||||||||| ||||||||| ||||||| || |||||||||||| | | | |||||||
Sbjct 271 ATGGGAAACCAAACAAGCAAAAAGTCACAA-GAGACATCGGCTAAGAGCGTGCACTACAC 329
Query 54 AACGGAACTGAGATCGTACGAGGCTGCATGTAAAGAAGACATGGAGATTCAGTCTTTCGA 113
|||||| |||||||| |||| |||||| || |||| ||||| |||| |||| ||||||||
Sbjct 330 AACGGAGCTGAGATCCTACGCGGCTGCGTGCAAAGCAGACACGGAGCTTCAATCTTTCGA 389
Query 114 TAAGCGTATGCAGGCACGGACGAGTCACGTGATAAGCACGCTACCCACAGGCGTTGAGGT 173
| | || |||| |||||||||||||||||||||||||||||| | || || ||||||||
Sbjct 390 CACGTGTTTGCAAGCACGGACGAGTCACGTGATAAGCACGCTAGCTACGGGGGTTGAGGT 449
Query 174 TCGGGCGCTCTCGTTTGATTCCTTGAAAGTAGTGACGGAGA-GTTTACTGGACATGAACC 232
||| ||||||||||| ||||||||||||| ||||||| | | | || |||| |||||||
Sbjct 450 TCGAGCGCTCTCGTTCGATTCCTTGAAAGAAGTGACGCA-ATGCTTGTTGGAGATGAACC 508
Query 233 AAGAAGTTATGAAAGTGATATTGGATTGCAAGAAAGACAT--GGAAGAATCAAGAAATG 289
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 509 AAGAAGTGGTGAAAGTGATATTGGATTGCAAGAAAGACATTTGGAAGAATCAAGAAATG 567
> AT4G34332.1 | Symbols: | other RNA | chr4:16424716-16425890
REVERSE LENGTH=1058
Length=1058
Score = 303 bits (164), Expect = 2e-81
Identities = 185/195 (95%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 4 GGAAACAAAACAAGCAGAAAGTCAAAGGAGACATCGGCTAGGAACTACACAACGGAACTG 63
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1058 GGAAACAAAACAAGCAGAAAGTCAAAGGAGAAATCGGGTAGGAACTACACAACGGAACTG 999
Query 64 AGATCGTACGAGGCTGCATGTAAAGAAGACATGGAGATTCAGTCTTTCGATA-AGCGTAT 122
|||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 998 AGATCGTACGAGGCTGCATGTAAAGAAGACATGGAGATTCAGTCTTTCGACACA-CGTAT 940
Query 123 GCAGGCACGGACGAGTCACGTGATAAGCACGCTACCCACAGGCGTTGAGGTTCGGGCGCT 182
|||||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||
Sbjct 939 GCAGGCACGGACGAGTCACGTGATAAGCACGCTAGCTACAGGCGTCGAGGTTCGATCGCT 880
Query 183 CTCGTTTGATTCCTT 197
|||||||||||||||
Sbjct 879 CTCGTTTGATTCCTT 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5