BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg353398 Length=1353 Score E Sequences producing significant alignments: (Bits) Value AT1G04640.1 | Symbols: LIP2 | lipoyltransferase 2 | chr1:129208... 268 8e-71 AT5G28527.1 | Symbols: | pseudogene, hypothetical protein | ch... 73.1 6e-12 > AT1G04640.1 | Symbols: LIP2 | lipoyltransferase 2 | chr1:1292080-1293357 FORWARD LENGTH=896 Length=896 Score = 268 bits (145), Expect = 8e-71 Identities = 215/245 (88%), Gaps = 20/245 (8%) Strand=Plus/Plus Query 1128 AATAACTAGTCATGGTTTGGCCTGT-AACATAGATCCTGATTTGAAGTCCTTTGAGCACA 1186 ||| ||||||||||||||||||| | || |||||||||||| |||||| ||||||||||| Sbjct 544 AATCACTAGTCATGGTTTGGCCT-TAAATATAGATCCTGATATGAAGTACTTTGAGCACA 602 Query 1187 TTGTGCCGTGTGGGATTGCTGATAAAGAAG----A-------G-AGACAGAC----ACTC 1230 ||||||| |||||||||||||||||||||| | | ||| |||| |||| Sbjct 603 TTGTGCCTTGTGGGATTGCTGATAAAGAAGTTACATCTTTGCGAAGAGAGACGGATACTC 662 Query 1231 TGCTT-C-TCAGAAGAAGTGATTCATGAACAGTTGGTTTCTTGTTTAGCCAAAGCTTTTT 1288 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 663 TGCTTCCTTCAGAAGAAGTGATTCATGAACAGTTGGTTTCTTGTTTAGCCAAAGCGTTTT 722 Query 1289 CTTATGATGATGTTGTGTGGAAGGAAGATCCTTCAGTCATTTTGGACACCCAAGATAACG 1348 |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| | Sbjct 723 CTTATGATGATGTTGTCTGGAAGGAAGATCCTTCACTCATTTTGGACACCCAAGATAAAG 782 Query 1349 AATAA 1353 ||||| Sbjct 783 AATAA 787 > AT5G28527.1 | Symbols: | pseudogene, hypothetical protein | chr5:10513366-10514577 FORWARD LENGTH=1212 Length=1212 Score = 73.1 bits (39), Expect = 6e-12 Identities = 153/206 (74%), Gaps = 16/206 (8%) Strand=Plus/Plus Query 669 TTTCTTACTCTGTTTTGATTTCACAAAAGAGAGATTTGGACCGCGTCTGCAACTGCCGTT 728 ||||||| | ||||||||||||||||||||||||||||| |||| | ||| || ||||| Sbjct 745 TTTCTTAGTATGTTTTGATTTCACAAAAGAGAGATTTGGGCCGCTTTTGCCTCTACCGTT 804 Query 729 TAAC-GAtttttttGAGGTTACCAGTT-CTCTATGTTGTGTAAGAGAAGAGCAACTCGCG 786 | | | | | | || | |||| | |||||| | |||| ||||| ||||| || ||| Sbjct 805 TGAGTGGTATCCT-GAAGATACC-GCCACTCTATCTAGTGTTAGAGAGGAGCAGCTTGCG 862 Query 787 CTCATGTTTCAGC-ACTCGGGTTTTTACAA-GATG-G--AGATATGGATGACGACTAAGA 841 | | ||| ||| | | ||| ||| |||| | ||||| |||| || ||||||| Sbjct 863 GTTTTATTTTAGCGA-T-GGGAC---ACATCGATGTGGGAGATACGGATAACTACTAAGA 917 Query 842 TTGAGCCCCAA-GAGGTGTCATGGAG 866 |||||||| || | |||||| ||||| Sbjct 918 TTGAGCCC-AACGCGGTGTCGTGGAG 942 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66616123215 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5