BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg353398

Length=1353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G04640.1 | Symbols: LIP2 | lipoyltransferase 2 | chr1:129208...   268    8e-71
  AT5G28527.1 | Symbols:  | pseudogene, hypothetical protein | ch...  73.1    6e-12


> AT1G04640.1 | Symbols: LIP2 | lipoyltransferase 2 | chr1:1292080-1293357 
FORWARD LENGTH=896
Length=896

 Score =  268 bits (145),  Expect = 8e-71
 Identities = 215/245 (88%), Gaps = 20/245 (8%)
 Strand=Plus/Plus

Query  1128  AATAACTAGTCATGGTTTGGCCTGT-AACATAGATCCTGATTTGAAGTCCTTTGAGCACA  1186
             ||| ||||||||||||||||||| | || |||||||||||| |||||| |||||||||||
Sbjct  544   AATCACTAGTCATGGTTTGGCCT-TAAATATAGATCCTGATATGAAGTACTTTGAGCACA  602

Query  1187  TTGTGCCGTGTGGGATTGCTGATAAAGAAG----A-------G-AGACAGAC----ACTC  1230
             ||||||| ||||||||||||||||||||||    |       | ||| ||||    ||||
Sbjct  603   TTGTGCCTTGTGGGATTGCTGATAAAGAAGTTACATCTTTGCGAAGAGAGACGGATACTC  662

Query  1231  TGCTT-C-TCAGAAGAAGTGATTCATGAACAGTTGGTTTCTTGTTTAGCCAAAGCTTTTT  1288
             ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  663   TGCTTCCTTCAGAAGAAGTGATTCATGAACAGTTGGTTTCTTGTTTAGCCAAAGCGTTTT  722

Query  1289  CTTATGATGATGTTGTGTGGAAGGAAGATCCTTCAGTCATTTTGGACACCCAAGATAACG  1348
             |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
Sbjct  723   CTTATGATGATGTTGTCTGGAAGGAAGATCCTTCACTCATTTTGGACACCCAAGATAAAG  782

Query  1349  AATAA  1353
             |||||
Sbjct  783   AATAA  787


> AT5G28527.1 | Symbols:  | pseudogene, hypothetical protein | 
chr5:10513366-10514577 FORWARD LENGTH=1212
Length=1212

 Score = 73.1 bits (39),  Expect = 6e-12
 Identities = 153/206 (74%), Gaps = 16/206 (8%)
 Strand=Plus/Plus

Query  669  TTTCTTACTCTGTTTTGATTTCACAAAAGAGAGATTTGGACCGCGTCTGCAACTGCCGTT  728
            ||||||| | ||||||||||||||||||||||||||||| |||| | |||  || |||||
Sbjct  745  TTTCTTAGTATGTTTTGATTTCACAAAAGAGAGATTTGGGCCGCTTTTGCCTCTACCGTT  804

Query  729  TAAC-GAtttttttGAGGTTACCAGTT-CTCTATGTTGTGTAAGAGAAGAGCAACTCGCG  786
            | |  | | |  | || | |||| |   |||||| | |||| ||||| ||||| || |||
Sbjct  805  TGAGTGGTATCCT-GAAGATACC-GCCACTCTATCTAGTGTTAGAGAGGAGCAGCTTGCG  862

Query  787  CTCATGTTTCAGC-ACTCGGGTTTTTACAA-GATG-G--AGATATGGATGACGACTAAGA  841
             |  | ||| ||| | | |||     |||  |||| |  ||||| |||| || |||||||
Sbjct  863  GTTTTATTTTAGCGA-T-GGGAC---ACATCGATGTGGGAGATACGGATAACTACTAAGA  917

Query  842  TTGAGCCCCAA-GAGGTGTCATGGAG  866
            |||||||| || | |||||| |||||
Sbjct  918  TTGAGCCC-AACGCGGTGTCGTGGAG  942



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 66616123215


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5