BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg353424 Length=3219 Score E Sequences producing significant alignments: (Bits) Value AT4G34060.1 | Symbols: DML3 | demeter-like protein 3 | chr4:163... 1496 0.0 > AT4G34060.1 | Symbols: DML3 | demeter-like protein 3 | chr4:16314003-16319426 FORWARD LENGTH=3308 Length=3308 Score = 1496 bits (810), Expect = 0.0 Identities = 1161/1326 (88%), Gaps = 42/1326 (3%) Strand=Plus/Plus Query 189 TCAAGATGATCCACAAAACACTCATCAGAAAGACGAGAAGGAGAATTCAAAAGAAAATCA 248 ||||||| || |||||| ||| ||| | ||| | |||||| |||||||||||||||| || Sbjct 94 TCAAGATAATTCACAAACCACCCATAAAAAAAAGGAGAAGAAGAATTCAAAAGAAAAGCA 153 Query 249 TGAAAGAAAGCGTGATGAATCAGAACTTTTTCAAGATGATGA-TTCACAACGTGTTACTG 307 || || ||||| | ||||||||||| | ||||||||||| | ||| ||||||||||| | Sbjct 154 TGGAATAAAGCATTCTGAATCAGAACATCTTCAAGATGAT-ATTTCGCAACGTGTTACCG 212 Query 308 GAAAAGGAAGGAGAAAGAATTCAAAAGGGACACCAAGAAAACAGAGGTTTAATAGGCCAC 367 ||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| | Sbjct 213 GAAAAGGAAGGAGAAGGAATTCAAAAGGGACACCAAAAAAACTGAGGTTTAATAGGCCTC 272 Query 368 GTATCTTGGAAGAGGGGAAGAAACCAAGGAATCCAGCCACTACTCGACTGAGAACTATAT 427 | ||||||||||| || ||||||||||| ||||| ||||| ||||||||||||||||||| Sbjct 273 GGATCTTGGAAGACGGAAAGAAACCAAGAAATCCCGCCACCACTCGACTGAGAACTATAT 332 Query 428 CCAACAAGAGGAAGAAAAAGGACATAGACAGTGAAGATGAAATTATACCTGAGCCTGCAA 487 |||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||||| Sbjct 333 CCAACAAGAGGAGGAAAAAGGACATAGACAGTGAAGATGAAGTTATACCAGAGCTTGCAA 392 Query 488 CTCCAAAAAAGCAAAGTC-TTCC-aagaagaagaaagaacgagaagattaagagaaACGT 545 |||||| |||| |||| | |||| ||| ||||||||||||||||||||||||||| ||| Sbjct 393 CTCCAACAAAGGAAAG-CTTTCCAAAG-AGAAGAAAGAACGAGAAGATTAAGAGATCCGT 450 Query 546 GGCTCGGACTTTGAACTTTAAG-AAGGAAATTGTTCTTAGTTGTCTTGAGTTCGAC-AGA 603 |||||||||||| || |||||| || ||||||||||| |||||||||||||||||| || Sbjct 451 GGCTCGGACTTTAAATTTTAAGCAA-GAAATTGTTCTGAGTTGTCTTGAGTTCGACAAG- 508 Query 604 ATTTGTGGACCAACTTTTCCAAAAGGGAGACAGAGGATGACCACACTACGAAGATATGAT 663 ||||||||||||| |||||||| ||||| | |||||| ||||||| ||| ||||||||| Sbjct 509 ATTTGTGGACCAATTTTTCCAAGAGGGAAAAAGAGGACCACCACACGACGCAGATATGAT 568 Query 664 TTCCACTGTTTATTACTTCCTATGCCTATTTGGAAAAAACAATCAAGAAGGTCTATGCGT 723 |||| ||||| |||||||| |||||| ||||||||||||||||||||||||||| |||| Sbjct 569 TTCCTTTGTTTTTTACTTCCGATGCCTGTTTGGAAAAAACAATCAAGAAGGTCTAAGCGT 628 Query 724 AGGAAGAATGTGGTTAGATGGGCTAGAATTGCTTCGTCTTCTGAACAGATAGAAGAAACC 783 ||||| ||| |||| |||||||||||||||||||| ||||| ||| | |||||||||| Sbjct 629 AGGAAAAATATGGTCAGATGGGCTAGAATTGCTTCTTCTTCAAAACTGCTAGAAGAAACT 688 Query 784 TTGCCTTTAATAGTAAAG-CATCAGAAAACTGATGGACGAGCAGATGTTTCTTTGCCA-A 841 |||||||||||||| ||| |||| || | | |||||| |||||||| |||||| || | Sbjct 689 TTGCCTTTAATAGT-AAGTCATCCGACTATTAATGGACAAGCAGATGCTTCTTT-ACACA 746 Query 842 TTGAAGACACACTCACGAGACATGTTGGTTCTGTAGTCTCCAAGCGAAA-CAAGAAAAGT 900 |||| ||||||||| |||||| ||||||||| |||| ||| |||||||||| Sbjct 747 TTGATGACACACTCGTGAGACA---------TGTAGTCTCAAAGC-AAACCAAGAAAAGT 796 Query 901 ACTAAGAATATTGTTGAGCATTTAAATCAACAAATATCTTATCAGAAAGATCACAGTCTC 960 |||| ||| | ||||||||||||||| ||||||| ||||||||||||||||| ||||| Sbjct 797 GCTAACAATGTCATTGAGCATTTAAATCGACAAATAACTTATCAGAAAGATCACGGTCTC 856 Query 961 TCTTCTCTAGCAGATGTTCCTTTGCACATTGAAGACACACTTATGAAATCGGCTAGTTCT 1020 || ||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||| Sbjct 857 TCATCTCTGGCAGATGTTCCTTTGCACATTGAAGATACACTAATAAAATCGGCTAGTTCT 916 Query 1021 GTACTTCCAGAACAACCCATCAAGAAGACGAAGGATATTGCTAAGTTAATCAAAGAAATG 1080 |||||| |||||| |||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 917 GTACTTTCAGAACGACCCATCAAGAAAACTAAGGATATTGCTAAGTTAATCAAAGATATG 976 Query 1081 GGAAGATTAAAGATCAATAAAAGGGTAACAACGATGATCAAATCTGCCAAAAAACTTGTT 1140 |||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||| ||| Sbjct 977 GGAAGATTAAAGATCAATAAAAAGGTAACAACGATGATCAAAGCTGACAAGAAACTCGTT 1036 Query 1141 ACTGCAAAGGTGAGTCTTGATCCAGAGACCATTAAAGAGTGGGA-GCTCTTAATGGTGAA 1199 || |||||||| | |||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 1037 ACGGCAAAGGTTAATCTTGATCCAGAGACCATTAAAGAGTGGGATG-TCTTAATGGTGAA 1095 Query 1200 TGA-TCTTCCAAGTAGATCATATG-CTGACAAGGAGACAGAGGCCAAATGGAAAAAAGAA 1257 ||| || ||||| ||||||||| | || |||||||| ||||||||||||||||||||| Sbjct 1096 TGATTC-ACCAAGCCGATCATATGAC-GATAAGGAGACGGAGGCCAAATGGAAAAAAGAA 1153 Query 1258 AGAGAGATTTTCCAAAGTCGGATAGATCTTTTCATTAACCGGATGCATCTTTTACAAGGT 1317 ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 1154 AGAGAGATTTTTCAAACCCGGATAGATCTTTTCATTAACCGGATGCATCGCTTACAAGGC 1213 Query 1318 AATAGAAAATTTAAGCAGTGGAAAGGCTCGGTTGTTGACTCAGTGGTTGGAGTTTTTCTG 1377 |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| || Sbjct 1214 AATAGAAAGTTTAAACAGTGGAAAGGCTCAGTTGTTGACTCAGTGGTTGGAGTTTTTTTG 1273 Query 1378 ACACAAAATG-TAACCGACTATCTTTCAAGCAACGCTTTTATGAGTGTGGCTGCAAAATT 1436 ||||||||| || |||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 1274 ACACAAAATACTA-CCGACTATCTTTCAAGCAACGCGTTTATGAGCGTGGCTGCAAAATT 1332 Query 1437 TCCTGTGGATGCAAGAGAAGGTTTAGAAAGTCTTGCATACTACATTGAGGAACCTCAAGA 1496 |||||| ||||||||||||||| || || |||||| ||||||||||||||||| Sbjct 1333 TCCTGTTGATGCAAGAGAAGGTCTA-----TC----ATACTATATTGAGGAACCTCAAGA 1383 Query 1497 TGTTAA 1502 || ||| Sbjct 1384 TGCTAA 1389 Score = 1120 bits (606), Expect = 0.0 Identities = 724/780 (93%), Gaps = 11/780 (1%) Strand=Plus/Plus Query 2174 AGGTTTTTTGCACAAAAGTTATTCCTAACTGTAATGCATGTCCGATGAAGTCAGAATGCA 2233 ||||||| ||||||||| ||||||||| |||||||||||||| |||||||||||||||| Sbjct 2025 AGGTTTTCTGCACAAAAACTATTCCTAATTGTAATGCATGTCCAATGAAGTCAGAATGCA 2084 Query 2234 AATATTTTGCAAGTGCATATGTCAGTTC-AAAGGTTCTTCTCGAGGGTCCAGAAGAAAAG 2292 |||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||| Sbjct 2085 AATATTTTGCAAGTGCATATGTCAGTTCTAAA-GTTCTTCTCGAGAGTCCAGAAGAAAAG 2143 Query 2293 ATGCATGAGCCTGATACTTTTATGAATGCATATTCTCAAGACGCTGATGTAGATATGACA 2352 |||||||||||| ||||||||||||||||| |||||||||||| || ||||||||||||| Sbjct 2144 ATGCATGAGCCTAATACTTTTATGAATGCACATTCTCAAGACGTTGCTGTAGATATGACA 2203 Query 2353 TCAAATATAAATTTGATAGAAGAATGTGTTTCTCCTGGATGTAGCGATCAAGCTATATGT 2412 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2204 TCAAATATAAATTTGGTAGAAGAATGTGTTTCTTCTGGATGTAGCGATCAAGCTATATGT 2263 Query 2413 TGTAAGCCACTGGTTGAGTTTCCTTCTTCTCCTAGAGCGGAAATTCCCGAGTCAACAGAC 2472 | ||||||||| |||||||||||||| || || ||||||||||||||||||||||||||| Sbjct 2264 TATAAGCCACTAGTTGAGTTTCCTTCGTCCCCAAGAGCGGAAATTCCCGAGTCAACAGAC 2323 Query 2473 ATTGAAGATATTCCATTCATAAATCCTTATCAGCT-ATATGCTAGAGTTCCTAAAATTGA 2531 ||||||||| |||||||||| |||| ||||||| | ||||||||| |||||||||||||| Sbjct 2324 ATTGAAGATGTTCCATTCATGAATCTTTATCAG-TCATATGCTAGTGTTCCTAAAATTGA 2382 Query 2532 TTTTGACATGGATGCATTGAAGAAAAATGTAGAAGATGCACTTGTAA-AAGGTGGTAGGA 2590 ||||||| |||||||||||||||||| |||||||||||||||||||| || |||| |||| Sbjct 2383 TTTTGACTTGGATGCATTGAAGAAAAGTGTAGAAGATGCACTTGTAATAA-GTGGCAGGA 2441 Query 2591 TGTTGAGCAGTTCTGATGAAGAAATATCAAAAGCATTAGTAG-TTCTCACTCCTGAAAAT 2649 ||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct 2442 ---TGAGCAGTTCTGATGAAGAAATATCAAAAGCATTAGT-GATTCCCACTCCTGAAAAT 2497 Query 2650 GCATGCATTCCAATCAAGCCGCCTCGAAAAATGAAGTATTATGATCGACTAAGAACTGAA 2709 ||||||||||| ||||| || ||||| ||||||||||||||| ||||||||||||||||| Sbjct 2498 GCATGCATTCCTATCAAACCACCTCGGAAAATGAAGTATTATAATCGACTAAGAACTGAA 2557 Query 2710 CATGTGGTTTATGTGCTTCCTGATAATCATGAGCTGCTCCAGGATTTTGAGAGAAGAGAA 2769 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| || Sbjct 2558 CATGTGGTTTATGTGCTTCCTGATAATCATGAGCTGCTACACGATTTTGAGAGAAGAAAA 2617 Query 2770 CTTGATGATCCGAGCCCCTACCTTCTTGCGATTTGGCAACCAGGTGAAACGTCATCCTCG 2829 ||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||| Sbjct 2618 CTTGATGATCCAAGTCCTTACCTTCTTGCGATTTGGCAACCAGGTGAAACATCATCCTCG 2677 Query 2830 TTCATTCCACCAAAGAAAAAGTGCAATTCTGATGGATCAAAGCTTTGCAAGATAAAGAGT 2889 ||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| | Sbjct 2678 TTCGTTCCACCAAAGAAAAAGTGTAGTTCTGATGGATCAAAGCTTTGCAAGATAAAGAAT 2737 Query 2890 TGTTCGTATTGTTGGACTATACGAGAACAAAGTTCCAACACTTTTCGCGGAACAATTTTG 2949 ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 2738 TGTTCATATTGTTGGACTATACGAGAACAAAACTCCAACATTTTTCGCGGAACAATTTTG 2797 Score = 745 bits (403), Expect = 0.0 Identities = 501/548 (91%), Gaps = 7/548 (1%) Strand=Plus/Plus Query 1545 CAATGATGCTAAAAGTTCTGAGTTTATCACTTTATCTGATGAGTCGATACCAGAGGTAGA 1604 ||| ||||||||||||||||| | ||||| ||||||||||||||| ||| || |||| || Sbjct 1379 CAA-GATGCTAAAAGTTCTGAATGTATCATTTTATCTGATGAGTCAATATCAAAGGTGGA 1437 Query 1605 AGAACATGAGAACACTGCAAAAAGGAAAAACGAGAAAACCGGTATTATGGAAGATGAGAC 1664 ||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1438 AGATCATGAGAATACTGCAAAAAGGAAAAACGAGAAAACCGGTATTATAGAAGATGAGAT 1497 Query 1665 AGTTGACTGGAAGACTCTTAGGAA-GATGTACACAAAAGAAGGATCTCGTCCCAAAATGC 1723 |||||||||||| | ||||| ||| ||||||||| |||||||||||||||||| |||||| Sbjct 1498 AGTTGACTGGAACAATCTTA-GAAGGATGTACACGAAAGAAGGATCTCGTCCCGAAATGC 1556 Query 1724 ATATGGACTCTGTTAATTGGAGTGATGTGAGATTATCTGGCCAAAAAGTTTTTGAAACTA 1783 ||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| | Sbjct 1557 ATATGGACTCTGTTAATTGGAGTGACGTGAGATTATCTGGCCAAAATGTTTTGGAAACCA 1616 Query 1784 CCATCAGGAGACGCGGACAATTCAGGATTCTTTCAGAAAGAATTTTGAAATTTCTCAACG 1843 |||| | | ||| ||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 1617 CCATTAAAAAACGTGGACAATTCAGGATTCTTTCAGAAAGAATATTGAAATTTCTTAACG 1676 Query 1844 ATGAAGTTCAA-CATAATGGAACTCTTGATCTTGAATGGCTCCGAAATGCTCCATCAGAT 1902 |||||||| || || ||||||| | ||||||| |||||||| ||||||||||||||| || Sbjct 1677 ATGAAGTT-AACCAAAATGGAAATATTGATCTGGAATGGCTTCGAAATGCTCCATCACAT 1735 Query 1903 TTAGTGAAGAGATATCTGTTGGAGATTGAAGGGATAGGACTGAAGAGTGCTGAGTGCGTA 1962 ||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||| Sbjct 1736 TTAGTGAAGAGATATCTGTTGGAAATCGAAGGGATAGGGCTGAAAAGTGCTGAGTGCGTA 1795 Query 1963 CGGCTGTTAGGACTCAAACATCATGCGTTTCCGGTTGACACAAATGTTGGTCGTATAGCA 2022 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1796 CGACTGTTAGGACTTAAACATCATGCGTTTCCGGTTGACACAAATGTTGGTCGTATAGCA 1855 Query 2023 GTTCGACTTGGT-TGGGTTCCTCTTGAACCTTTACCAAATGGAGTTCAAATGCATCAACT 2081 |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1856 GTTCGACTAGGTCTGG-TTCCTCTTGAACCTTTACCAAATGGAGTTCAAATGCATCAACT 1914 Query 2082 ATTCCAGT 2089 |||| ||| Sbjct 1915 ATTCGAGT 1922 Score = 377 bits (204), Expect = 3e-103 Identities = 249/271 (92%), Gaps = 1/271 (0%) Strand=Plus/Plus Query 2949 GGTTTTTGCTGATCATGAGACGAGTTTAAAACCCATTGTCTTTCCTAGAGAGTTGTGTGA 3008 ||||||||||||||||||||| || ||||| ||||||||||||| ||| ||||||||| | Sbjct 2863 GGTTTTTGCTGATCATGAGACAAGCTTAAACCCCATTGTCTTTCGTAGGGAGTTGTGTAA 2922 Query 3009 CGGACTAGAAAAACGTGCATTATATTGTGGTTCATCAGTGACATCCATTTTTCGATTTTT 3068 |||||||||||||||||| |||||||||||||| |||||||||| |||||| | |||| Sbjct 2923 GGGACTAGAAAAACGTGCACTATATTGTGGTTCAACAGTGACATCTATTTTTAAACTTTT 2982 Query 3069 AGACACAAGACGGATTCAACTTTGCTTTTGGACGGGGTTTTTATGTATGAGAGCATTTGA 3128 |||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| Sbjct 2983 AGACACAAGACGGATTGAACTTTGCTTTTGGACAGGGTTTTTATGTTTGAGAGCATTTGA 3042 Query 3129 TCGAAAGCAACGATATCCAAAAGAACTTGTTCGACGACTACACACTCCACCTGATGAGAG 3188 ||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||| Sbjct 3043 TCGAAAGCAACGAGATCCAAAAGAGCTTGTCCGACGTCTACACACTCCACCTGATGAGAG 3102 Query 3189 AGGGCCAAAGTTTATGAATGATGAT-ATATA 3218 ||||||||||||||||| ||||||| ||||| Sbjct 3103 AGGGCCAAAGTTTATGAGTGATGATGATATA 3133 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 160132882056 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5