BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353424
Length=3219
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34060.1 | Symbols: DML3 | demeter-like protein 3 | chr4:163... 1496 0.0
> AT4G34060.1 | Symbols: DML3 | demeter-like protein 3 | chr4:16314003-16319426
FORWARD LENGTH=3308
Length=3308
Score = 1496 bits (810), Expect = 0.0
Identities = 1161/1326 (88%), Gaps = 42/1326 (3%)
Strand=Plus/Plus
Query 189 TCAAGATGATCCACAAAACACTCATCAGAAAGACGAGAAGGAGAATTCAAAAGAAAATCA 248
||||||| || |||||| ||| ||| | ||| | |||||| |||||||||||||||| ||
Sbjct 94 TCAAGATAATTCACAAACCACCCATAAAAAAAAGGAGAAGAAGAATTCAAAAGAAAAGCA 153
Query 249 TGAAAGAAAGCGTGATGAATCAGAACTTTTTCAAGATGATGA-TTCACAACGTGTTACTG 307
|| || ||||| | ||||||||||| | ||||||||||| | ||| ||||||||||| |
Sbjct 154 TGGAATAAAGCATTCTGAATCAGAACATCTTCAAGATGAT-ATTTCGCAACGTGTTACCG 212
Query 308 GAAAAGGAAGGAGAAAGAATTCAAAAGGGACACCAAGAAAACAGAGGTTTAATAGGCCAC 367
||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |
Sbjct 213 GAAAAGGAAGGAGAAGGAATTCAAAAGGGACACCAAAAAAACTGAGGTTTAATAGGCCTC 272
Query 368 GTATCTTGGAAGAGGGGAAGAAACCAAGGAATCCAGCCACTACTCGACTGAGAACTATAT 427
| ||||||||||| || ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 273 GGATCTTGGAAGACGGAAAGAAACCAAGAAATCCCGCCACCACTCGACTGAGAACTATAT 332
Query 428 CCAACAAGAGGAAGAAAAAGGACATAGACAGTGAAGATGAAATTATACCTGAGCCTGCAA 487
|||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |||||
Sbjct 333 CCAACAAGAGGAGGAAAAAGGACATAGACAGTGAAGATGAAGTTATACCAGAGCTTGCAA 392
Query 488 CTCCAAAAAAGCAAAGTC-TTCC-aagaagaagaaagaacgagaagattaagagaaACGT 545
|||||| |||| |||| | |||| ||| ||||||||||||||||||||||||||| |||
Sbjct 393 CTCCAACAAAGGAAAG-CTTTCCAAAG-AGAAGAAAGAACGAGAAGATTAAGAGATCCGT 450
Query 546 GGCTCGGACTTTGAACTTTAAG-AAGGAAATTGTTCTTAGTTGTCTTGAGTTCGAC-AGA 603
|||||||||||| || |||||| || ||||||||||| |||||||||||||||||| ||
Sbjct 451 GGCTCGGACTTTAAATTTTAAGCAA-GAAATTGTTCTGAGTTGTCTTGAGTTCGACAAG- 508
Query 604 ATTTGTGGACCAACTTTTCCAAAAGGGAGACAGAGGATGACCACACTACGAAGATATGAT 663
||||||||||||| |||||||| ||||| | |||||| ||||||| ||| |||||||||
Sbjct 509 ATTTGTGGACCAATTTTTCCAAGAGGGAAAAAGAGGACCACCACACGACGCAGATATGAT 568
Query 664 TTCCACTGTTTATTACTTCCTATGCCTATTTGGAAAAAACAATCAAGAAGGTCTATGCGT 723
|||| ||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||
Sbjct 569 TTCCTTTGTTTTTTACTTCCGATGCCTGTTTGGAAAAAACAATCAAGAAGGTCTAAGCGT 628
Query 724 AGGAAGAATGTGGTTAGATGGGCTAGAATTGCTTCGTCTTCTGAACAGATAGAAGAAACC 783
||||| ||| |||| |||||||||||||||||||| ||||| ||| | ||||||||||
Sbjct 629 AGGAAAAATATGGTCAGATGGGCTAGAATTGCTTCTTCTTCAAAACTGCTAGAAGAAACT 688
Query 784 TTGCCTTTAATAGTAAAG-CATCAGAAAACTGATGGACGAGCAGATGTTTCTTTGCCA-A 841
|||||||||||||| ||| |||| || | | |||||| |||||||| |||||| || |
Sbjct 689 TTGCCTTTAATAGT-AAGTCATCCGACTATTAATGGACAAGCAGATGCTTCTTT-ACACA 746
Query 842 TTGAAGACACACTCACGAGACATGTTGGTTCTGTAGTCTCCAAGCGAAA-CAAGAAAAGT 900
|||| ||||||||| |||||| ||||||||| |||| ||| ||||||||||
Sbjct 747 TTGATGACACACTCGTGAGACA---------TGTAGTCTCAAAGC-AAACCAAGAAAAGT 796
Query 901 ACTAAGAATATTGTTGAGCATTTAAATCAACAAATATCTTATCAGAAAGATCACAGTCTC 960
|||| ||| | ||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 797 GCTAACAATGTCATTGAGCATTTAAATCGACAAATAACTTATCAGAAAGATCACGGTCTC 856
Query 961 TCTTCTCTAGCAGATGTTCCTTTGCACATTGAAGACACACTTATGAAATCGGCTAGTTCT 1020
|| ||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 857 TCATCTCTGGCAGATGTTCCTTTGCACATTGAAGATACACTAATAAAATCGGCTAGTTCT 916
Query 1021 GTACTTCCAGAACAACCCATCAAGAAGACGAAGGATATTGCTAAGTTAATCAAAGAAATG 1080
|||||| |||||| |||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 917 GTACTTTCAGAACGACCCATCAAGAAAACTAAGGATATTGCTAAGTTAATCAAAGATATG 976
Query 1081 GGAAGATTAAAGATCAATAAAAGGGTAACAACGATGATCAAATCTGCCAAAAAACTTGTT 1140
|||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||| |||
Sbjct 977 GGAAGATTAAAGATCAATAAAAAGGTAACAACGATGATCAAAGCTGACAAGAAACTCGTT 1036
Query 1141 ACTGCAAAGGTGAGTCTTGATCCAGAGACCATTAAAGAGTGGGA-GCTCTTAATGGTGAA 1199
|| |||||||| | |||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1037 ACGGCAAAGGTTAATCTTGATCCAGAGACCATTAAAGAGTGGGATG-TCTTAATGGTGAA 1095
Query 1200 TGA-TCTTCCAAGTAGATCATATG-CTGACAAGGAGACAGAGGCCAAATGGAAAAAAGAA 1257
||| || ||||| ||||||||| | || |||||||| |||||||||||||||||||||
Sbjct 1096 TGATTC-ACCAAGCCGATCATATGAC-GATAAGGAGACGGAGGCCAAATGGAAAAAAGAA 1153
Query 1258 AGAGAGATTTTCCAAAGTCGGATAGATCTTTTCATTAACCGGATGCATCTTTTACAAGGT 1317
||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1154 AGAGAGATTTTTCAAACCCGGATAGATCTTTTCATTAACCGGATGCATCGCTTACAAGGC 1213
Query 1318 AATAGAAAATTTAAGCAGTGGAAAGGCTCGGTTGTTGACTCAGTGGTTGGAGTTTTTCTG 1377
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1214 AATAGAAAGTTTAAACAGTGGAAAGGCTCAGTTGTTGACTCAGTGGTTGGAGTTTTTTTG 1273
Query 1378 ACACAAAATG-TAACCGACTATCTTTCAAGCAACGCTTTTATGAGTGTGGCTGCAAAATT 1436
||||||||| || |||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1274 ACACAAAATACTA-CCGACTATCTTTCAAGCAACGCGTTTATGAGCGTGGCTGCAAAATT 1332
Query 1437 TCCTGTGGATGCAAGAGAAGGTTTAGAAAGTCTTGCATACTACATTGAGGAACCTCAAGA 1496
|||||| ||||||||||||||| || || |||||| |||||||||||||||||
Sbjct 1333 TCCTGTTGATGCAAGAGAAGGTCTA-----TC----ATACTATATTGAGGAACCTCAAGA 1383
Query 1497 TGTTAA 1502
|| |||
Sbjct 1384 TGCTAA 1389
Score = 1120 bits (606), Expect = 0.0
Identities = 724/780 (93%), Gaps = 11/780 (1%)
Strand=Plus/Plus
Query 2174 AGGTTTTTTGCACAAAAGTTATTCCTAACTGTAATGCATGTCCGATGAAGTCAGAATGCA 2233
||||||| ||||||||| ||||||||| |||||||||||||| ||||||||||||||||
Sbjct 2025 AGGTTTTCTGCACAAAAACTATTCCTAATTGTAATGCATGTCCAATGAAGTCAGAATGCA 2084
Query 2234 AATATTTTGCAAGTGCATATGTCAGTTC-AAAGGTTCTTCTCGAGGGTCCAGAAGAAAAG 2292
|||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||
Sbjct 2085 AATATTTTGCAAGTGCATATGTCAGTTCTAAA-GTTCTTCTCGAGAGTCCAGAAGAAAAG 2143
Query 2293 ATGCATGAGCCTGATACTTTTATGAATGCATATTCTCAAGACGCTGATGTAGATATGACA 2352
|||||||||||| ||||||||||||||||| |||||||||||| || |||||||||||||
Sbjct 2144 ATGCATGAGCCTAATACTTTTATGAATGCACATTCTCAAGACGTTGCTGTAGATATGACA 2203
Query 2353 TCAAATATAAATTTGATAGAAGAATGTGTTTCTCCTGGATGTAGCGATCAAGCTATATGT 2412
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2204 TCAAATATAAATTTGGTAGAAGAATGTGTTTCTTCTGGATGTAGCGATCAAGCTATATGT 2263
Query 2413 TGTAAGCCACTGGTTGAGTTTCCTTCTTCTCCTAGAGCGGAAATTCCCGAGTCAACAGAC 2472
| ||||||||| |||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 2264 TATAAGCCACTAGTTGAGTTTCCTTCGTCCCCAAGAGCGGAAATTCCCGAGTCAACAGAC 2323
Query 2473 ATTGAAGATATTCCATTCATAAATCCTTATCAGCT-ATATGCTAGAGTTCCTAAAATTGA 2531
||||||||| |||||||||| |||| ||||||| | ||||||||| ||||||||||||||
Sbjct 2324 ATTGAAGATGTTCCATTCATGAATCTTTATCAG-TCATATGCTAGTGTTCCTAAAATTGA 2382
Query 2532 TTTTGACATGGATGCATTGAAGAAAAATGTAGAAGATGCACTTGTAA-AAGGTGGTAGGA 2590
||||||| |||||||||||||||||| |||||||||||||||||||| || |||| ||||
Sbjct 2383 TTTTGACTTGGATGCATTGAAGAAAAGTGTAGAAGATGCACTTGTAATAA-GTGGCAGGA 2441
Query 2591 TGTTGAGCAGTTCTGATGAAGAAATATCAAAAGCATTAGTAG-TTCTCACTCCTGAAAAT 2649
||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 2442 ---TGAGCAGTTCTGATGAAGAAATATCAAAAGCATTAGT-GATTCCCACTCCTGAAAAT 2497
Query 2650 GCATGCATTCCAATCAAGCCGCCTCGAAAAATGAAGTATTATGATCGACTAAGAACTGAA 2709
||||||||||| ||||| || ||||| ||||||||||||||| |||||||||||||||||
Sbjct 2498 GCATGCATTCCTATCAAACCACCTCGGAAAATGAAGTATTATAATCGACTAAGAACTGAA 2557
Query 2710 CATGTGGTTTATGTGCTTCCTGATAATCATGAGCTGCTCCAGGATTTTGAGAGAAGAGAA 2769
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 2558 CATGTGGTTTATGTGCTTCCTGATAATCATGAGCTGCTACACGATTTTGAGAGAAGAAAA 2617
Query 2770 CTTGATGATCCGAGCCCCTACCTTCTTGCGATTTGGCAACCAGGTGAAACGTCATCCTCG 2829
||||||||||| || || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 2618 CTTGATGATCCAAGTCCTTACCTTCTTGCGATTTGGCAACCAGGTGAAACATCATCCTCG 2677
Query 2830 TTCATTCCACCAAAGAAAAAGTGCAATTCTGATGGATCAAAGCTTTGCAAGATAAAGAGT 2889
||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 2678 TTCGTTCCACCAAAGAAAAAGTGTAGTTCTGATGGATCAAAGCTTTGCAAGATAAAGAAT 2737
Query 2890 TGTTCGTATTGTTGGACTATACGAGAACAAAGTTCCAACACTTTTCGCGGAACAATTTTG 2949
||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 2738 TGTTCATATTGTTGGACTATACGAGAACAAAACTCCAACATTTTTCGCGGAACAATTTTG 2797
Score = 745 bits (403), Expect = 0.0
Identities = 501/548 (91%), Gaps = 7/548 (1%)
Strand=Plus/Plus
Query 1545 CAATGATGCTAAAAGTTCTGAGTTTATCACTTTATCTGATGAGTCGATACCAGAGGTAGA 1604
||| ||||||||||||||||| | ||||| ||||||||||||||| ||| || |||| ||
Sbjct 1379 CAA-GATGCTAAAAGTTCTGAATGTATCATTTTATCTGATGAGTCAATATCAAAGGTGGA 1437
Query 1605 AGAACATGAGAACACTGCAAAAAGGAAAAACGAGAAAACCGGTATTATGGAAGATGAGAC 1664
||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1438 AGATCATGAGAATACTGCAAAAAGGAAAAACGAGAAAACCGGTATTATAGAAGATGAGAT 1497
Query 1665 AGTTGACTGGAAGACTCTTAGGAA-GATGTACACAAAAGAAGGATCTCGTCCCAAAATGC 1723
|||||||||||| | ||||| ||| ||||||||| |||||||||||||||||| ||||||
Sbjct 1498 AGTTGACTGGAACAATCTTA-GAAGGATGTACACGAAAGAAGGATCTCGTCCCGAAATGC 1556
Query 1724 ATATGGACTCTGTTAATTGGAGTGATGTGAGATTATCTGGCCAAAAAGTTTTTGAAACTA 1783
||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 1557 ATATGGACTCTGTTAATTGGAGTGACGTGAGATTATCTGGCCAAAATGTTTTGGAAACCA 1616
Query 1784 CCATCAGGAGACGCGGACAATTCAGGATTCTTTCAGAAAGAATTTTGAAATTTCTCAACG 1843
|||| | | ||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1617 CCATTAAAAAACGTGGACAATTCAGGATTCTTTCAGAAAGAATATTGAAATTTCTTAACG 1676
Query 1844 ATGAAGTTCAA-CATAATGGAACTCTTGATCTTGAATGGCTCCGAAATGCTCCATCAGAT 1902
|||||||| || || ||||||| | ||||||| |||||||| ||||||||||||||| ||
Sbjct 1677 ATGAAGTT-AACCAAAATGGAAATATTGATCTGGAATGGCTTCGAAATGCTCCATCACAT 1735
Query 1903 TTAGTGAAGAGATATCTGTTGGAGATTGAAGGGATAGGACTGAAGAGTGCTGAGTGCGTA 1962
||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||
Sbjct 1736 TTAGTGAAGAGATATCTGTTGGAAATCGAAGGGATAGGGCTGAAAAGTGCTGAGTGCGTA 1795
Query 1963 CGGCTGTTAGGACTCAAACATCATGCGTTTCCGGTTGACACAAATGTTGGTCGTATAGCA 2022
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 CGACTGTTAGGACTTAAACATCATGCGTTTCCGGTTGACACAAATGTTGGTCGTATAGCA 1855
Query 2023 GTTCGACTTGGT-TGGGTTCCTCTTGAACCTTTACCAAATGGAGTTCAAATGCATCAACT 2081
|||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 GTTCGACTAGGTCTGG-TTCCTCTTGAACCTTTACCAAATGGAGTTCAAATGCATCAACT 1914
Query 2082 ATTCCAGT 2089
|||| |||
Sbjct 1915 ATTCGAGT 1922
Score = 377 bits (204), Expect = 3e-103
Identities = 249/271 (92%), Gaps = 1/271 (0%)
Strand=Plus/Plus
Query 2949 GGTTTTTGCTGATCATGAGACGAGTTTAAAACCCATTGTCTTTCCTAGAGAGTTGTGTGA 3008
||||||||||||||||||||| || ||||| ||||||||||||| ||| ||||||||| |
Sbjct 2863 GGTTTTTGCTGATCATGAGACAAGCTTAAACCCCATTGTCTTTCGTAGGGAGTTGTGTAA 2922
Query 3009 CGGACTAGAAAAACGTGCATTATATTGTGGTTCATCAGTGACATCCATTTTTCGATTTTT 3068
|||||||||||||||||| |||||||||||||| |||||||||| |||||| | ||||
Sbjct 2923 GGGACTAGAAAAACGTGCACTATATTGTGGTTCAACAGTGACATCTATTTTTAAACTTTT 2982
Query 3069 AGACACAAGACGGATTCAACTTTGCTTTTGGACGGGGTTTTTATGTATGAGAGCATTTGA 3128
|||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||
Sbjct 2983 AGACACAAGACGGATTGAACTTTGCTTTTGGACAGGGTTTTTATGTTTGAGAGCATTTGA 3042
Query 3129 TCGAAAGCAACGATATCCAAAAGAACTTGTTCGACGACTACACACTCCACCTGATGAGAG 3188
||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 3043 TCGAAAGCAACGAGATCCAAAAGAGCTTGTCCGACGTCTACACACTCCACCTGATGAGAG 3102
Query 3189 AGGGCCAAAGTTTATGAATGATGAT-ATATA 3218
||||||||||||||||| ||||||| |||||
Sbjct 3103 AGGGCCAAAGTTTATGAGTGATGATGATATA 3133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 160132882056
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5