BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg353479 Length=570 Score E Sequences producing significant alignments: (Bits) Value AT5G07950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 183 1e-45 > AT5G07950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2540284-2542136 REVERSE LENGTH=1247 Length=1247 Score = 183 bits (99), Expect = 1e-45 Identities = 109/114 (96%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 236 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 295 ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||| Sbjct 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687 Query 296 TCATAATGGAACTTATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACA 349 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACA 741 Score = 134 bits (72), Expect = 1e-30 Identities = 84/90 (93%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 353 AGCCAGTTCTCCCTAGAGTGAAAGAAAATAATTTCGGTATTTCTTCTATATCACATACCA 412 ||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||| Sbjct 817 AGCCAGTTCTCCCCAGAGTGAAAGATTATAATATCGGTAGTTCTTCTATATCACATACCA 876 Query 413 ACCAGCCAACCGTAGAAATTTTGCAGATTT 442 |||||||||||| ||||||||||||||||| Sbjct 877 ACCAGCCAACCGCAGAAATTTTGCAGATTT 906 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27377610115 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5