BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353481
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33450.1 | Symbols: ATMYB69, MYB69 | myb domain protein 69 |... 1208 0.0
> AT4G33450.1 | Symbols: ATMYB69, MYB69 | myb domain protein 69
| chr4:16095392-16096610 REVERSE LENGTH=1114
Length=1114
Score = 1208 bits (654), Expect = 0.0
Identities = 721/754 (96%), Gaps = 2/754 (0%)
Strand=Plus/Plus
Query 1 ATGGAAATGTCTAGAGGAAGCAACAGTTTTGACAATAAGAAGCCTAGTTGCCAGAGAGGT 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 8 ATGGAGATGTCTAGAGGAAGCAACAGTTTTGACAATAAGAAGCCTAGTTGCCAAAGAGGT 67
Query 61 CACTGGAGACCTGTTGAAGACGACAATCTCCGGCAACTCGTTGAGCAATACGGTCCCAAG 120
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 68 CACTGGAGACCTGTTGAAGATGACAATCTCCGGCAACTCGTTGAACAATACGGTCCCAAG 127
Query 121 AACTGGAATTTCATTGCTCAACATCTCTATGGAAGATCAGGGAAAAGCTGTAGATTGAGA 180
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 128 AACTGGAATTTTATTGCTCAACATCTCTATGGAAGATCAGGGAAAAGCTGTAGATTAAGA 187
Query 181 TGGTACAACCAACTTGATCCAAACATCACCAAGAAACCCTTCACCGAGGAAGAAGAAGAG 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 188 TGGTACAACCAACTTGATCCAAACATCACCAAGAAACCCTTCACCGAGGAGGAAGAAGAG 247
Query 241 AGACTGCTTAAAGCTCATCGGATCCAGGGGAATCGTTGGGCCTCCATAGCCCGACTGTTC 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 248 AGACTGCTTAAAGCTCATCGGATCCAAGGGAATCGTTGGGCCTCCATAGCCCGACTGTTC 307
Query 301 CCTGGGAGGACGGACAACGCTGTCAAGAACCATTTTCATGTCATCATGGCTAGACGCAAA 360
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 308 CCCGGGAGGACCGACAACGCTGTCAAAAACCATTTTCATGTCATCATGGCTAGACGCAAA 367
Query 361 CGCGAAAACTTCTCTTCCACGGCTACTTCTACTTTCAACCAAACTTGGCATAATGTTTTG 420
|| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 368 CGGGAAAACTTCTCTTCCACGGCTACTTCTACGTTCAACCAAACTTGGCATACTGTTTTG 427
Query 421 AGCCCTAGTTCTAGTATTACAAGGCTTAATAGATCCCAGTTT-GGGCTATGGAGGTACCG 479
||||||||||||||| |||||||||| ||||||||||| ||| |||||||||||||| ||
Sbjct 428 AGCCCTAGTTCTAGTCTTACAAGGCTAAATAGATCCCA-TTTCGGGCTATGGAGGTATCG 486
Query 480 GAAGGATAAGAGTCACGATCTCTGGCCTTACTCTTTTGTTTCAGCACCTATAAATGATCA 539
|||||||||||| || ||||||||||||||||||||||||| |||||| |||| |||
Sbjct 487 AAAGGATAAGAGTTGCGGTCTCTGGCCTTACTCTTTTGTTTCACCACCTACGAATGGTCA 546
Query 540 ATTTGGATCTTCATCTGTCTCTAACGTACGCCACGAAATTTATCTTGAGAGGAGAAAGTC 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 547 ATTTGGATCTTCATCTGTCTCTAACGTACACCACGAAATTTATCTTGAGAGGAGAAAGTC 606
Query 600 GAAAGAGTTGGTGGATGATCACAATTACACATTTCATGCAGCCACACCAGATCATAAGAA 659
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 607 GAAAGAGTTGGTGGATCCTCAGAATTACACATTTCATGCAGCCACACCAGATCATAAGAT 666
Query 660 GACTTCAAATGAAGATGGACCATCCATTGGAGATGATGGTGAGAAGAACGATGTTACTTT 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 667 GACTTCAAATGAAGATGGACCATCCATGGGAGATGATGGTGAGAAGAACGATGTTACTTT 726
Query 720 CATTGATTTTCTTGGTGTTGGATTAGCTTCTTAG 753
||||||||||||||||||||||||||||||||||
Sbjct 727 CATTGATTTTCTTGGTGTTGGATTAGCTTCTTAG 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5