BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353497
Length=1830
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33230.1 | Symbols: | Plant invertase/pectin methylesterase... 2872 0.0
> AT4G33230.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr4:16026591-16028754 REVERSE LENGTH=1830
Length=1830
Score = 2872 bits (1555), Expect = 0.0
Identities = 1739/1830 (95%), Gaps = 4/1830 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTTTCAAGACTTTGACAAGATTCAAGAACGCGTAAATGCAGAGAGGAAACGTAAA 60
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCTTTTCAAGACTTCGACAAGATTCAAGAACGCGTAAATGCAGAGAGAAAACGTAAA 60
Query 61 TTCAGGAAGAGAATCATCTTTGGAATCGTCTCTGCGCTTGTTGTTGTTGCTGCCATTATT 120
|||||||||||||||||||| ||| ||||||| | ||||||||||| |||||||||||||
Sbjct 61 TTCAGGAAGAGAATCATCTTAGGAGTCGTCTCCGTGCTTGTTGTTGCTGCTGCCATTATT 120
Query 121 GGAGGTGCTTTTGCTTATGTTACATATGaaaacaaaactcaagaacaagggaaaactaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAGGTGCTTTTGCTTATGTTACATATGAAAACAAAACTCAAGAACAAGGGAAAACTACA 180
Query 181 aacaacaaaagtaaagatagccccaccaaaagCGAGAGCCCGAGCCGGAAACCACCATCA 240
|||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 181 AACAACAAAAGTAAGGATAGCCCCACCAAAAGCGAGAGCCCGAGCCCGAAACCGCCATCA 240
Query 241 TCCGCAGCACAAACTGTGAAAGCTGGCCAGGTCGATAAGATTATCCAAACACTTTGCAAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCGCAGCACAAACTGTGAAAGCTGGCCAGGTCGATAAGATTATCCAAACACTTTGCAAT 300
Query 301 TCCACTCTTTACAAACCAACTTGCGAGAATACTCTTAAAAATGGGACAAAGACAGATACT 360
|| ||||| ||||||||||||||| |||||||||||||||||| |||||||| |||||||
Sbjct 301 TCTACTCTCTACAAACCAACTTGCCAGAATACTCTTAAAAATGAGACAAAGAAAGATACT 360
Query 361 CCTCTATCTGACCCTAGGAGCCTGTTAACGTCTGCCATTGTAGCTGTCAATGACGATCTA 420
|||| | |||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 CCTCAAACTGATCCTAGGAGCCTGTTAAAATCTGCCATTGTAGCTGTCAATGACGATCTA 420
Query 421 GA-CAGAGTATTTAAAAAGGTTTTGAGCCTGAAAACAGAGAACAAAGATGACAAAGACGC 479
|| || |||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GACCA-AGTATTCAAAAGGGTTTTGAGCCTGAAAACAGAGAACAAAGATGACAAAGACGC 479
Query 480 TATAGCTCAGTGTAAGTTGCTTGTAGATGAAGCTAAGGAAGAACTTGGCACCTCCATGAA 539
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 480 TATAGCCCAGTGTAAGTTGCTTGTGGATGAAGCTAAAGAAGAACTTGGCACCTCCATGAA 539
Query 540 AAGAATCAACGACACAGAGGTTAATAACTTTGCGAAAATAGTTCCCGATTTAGACAGTTG 599
||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 540 AAGAATCAACGACTCAGAGGTTAATAACTTTGCAAAAATAGTTCCCGATTTGGACAGTTG 599
Query 600 GCTAAGCGCAGTCATGTCTTATCAAGAAACATGTGTCGATGGATTTGAAGAAGGGAAACT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCTAAGCGCAGTCATGTCTTATCAAGAAACATGTGTCGATGGATTTGAAGAAGGGAAACT 659
Query 660 CAAAACGGAGATACGTAAGAATTTCAATTCTTCTCAAGTTTTGACAAGTAATTCACTCGC 719
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 CAAAACGGAGATACGTAAGAATTTCAATTCTTCTCAAGTTTTGACAAGCAATTCACTCGC 719
Query 720 GATGATAAAATCTTTAGACGGATATATATCCTCGGTTCCAAAGGTTAAAACGCGACATCT 779
||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 720 GATGATAAAATCTTTAGACGGATATCTTTCCTCGGTTCCAAAGGTTAAAACGCGACTTCT 779
Query 780 TCTTGAAGCAAGATCTTCTGCTAAAGAGACAGATCATATTACGTCTTGGTTAAGCAACAA 839
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct 780 TCTTGAAGCAAGATCTTCTGCTAAAGAGACAGATCATATTACGTCGTGGCTAAGCAATAA 839
Query 840 GGAGAGACGAATGTTAAAAGCTGTTGATGTGAATGCATTGAAACCTAATGCTACAGTGGC 899
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 GGAAAGACGAATGTTAAAAGCTGTTGATGTGAAAGCATTGAAACCTAATGCTACAGTGGC 899
Query 900 TAAAGATGGTAGTGGAAATTTCACAACCATTAACGATGCACTTAAAGCAATGCCTGCTAA 959
||||||||| ||||||||||| || ||||| |||| ||||||||||||||||||||| ||
Sbjct 900 TAAAGATGGCAGTGGAAATTTTACTACCATCAACGCTGCACTTAAAGCAATGCCTGCCAA 959
Query 960 GTACCAAGGAAGGTACACCATCTATATCAAACATGGAGTTTATGATGAATCTGTGATTAT 1019
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 960 GTACCAAGGAAGGTACACCATCTATATCAAACATGGAATTTATGATGAATCTGTGATTAT 1019
Query 1020 TGACAAGAAGAAACCTAATGTTACAATGATCGGTGATGGATCACAGAAGACAATCGTGAC 1079
||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1020 TGATAAGAAGAAACCTAATGTTACAATGGTCGGTGATGGATCACAGAAGACGATCGTGAC 1079
Query 1080 GGGCAACAAAAGCCACGCAAAGAAAATCCGCACTTTCGTCACAGCAACATTTGTGGCACA 1139
||| ||||||||||||||||||||||| || || ||| | ||||||||||||||||||||
Sbjct 1080 GGGAAACAAAAGCCACGCAAAGAAAATTCGAACGTTCCTAACAGCAACATTTGTGGCACA 1139
Query 1140 AGGAGAAGGATTCATGGCACACTCCATGGGGTT-CAGGAACACGGCTGGGCCAGAGGGAC 1198
||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||||||||
Sbjct 1140 AGGAGAAGGATTCATGGCACAATCCATGGGGTTTC-GGAACACTGCTGGGCCAGAGGGAC 1198
Query 1199 ACCAAGCTGTCGCAATCCGTGTCCAATCCGACCGTTCTGTTTTCCTAAACTGTCGATTTG 1258
||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1199 ACCAAGCGGTCGCAATACGTGTCCAATCCGACCGATCTGTTTTCCTTAACTGTCGATTTG 1258
Query 1259 AAGGCTACCAAGACACGTTATATGCGTACACTCACCGCCAATATTACAGAAGTTGTGTCA 1318
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1259 AAGGCTACCAAGACACGTTATACGCATACACTCACCGCCAATATTACAGAAGTTGTGTCA 1318
Query 1319 TTGTAGGAACAGTCGATTTCATCTTCGGTGATGCCGCCGCCATATTCCAGAACTGTGACA 1378
|| | || ||||| |||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 1319 TTATCGGGACAGTTGATTTCATCTTCGGTGATGCGGCCGCGATTTTCCAGAACTGTGACA 1378
Query 1379 TCTTTATCAGAAAAGGTTTACCGGGGCAGAAGAACACGGTGACGGCTCAAGGACGAGTGG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TCTTTATCAGAAAAGGTTTACCGGGGCAGAAGAACACGGTGACGGCTCAAGGACGAGTGG 1438
Query 1439 ATAAGTTTCAGACGACAGGCTTTGTGATCCACAACTGTACAATTGCTCCAAACGAAGATC 1498
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1439 ATAAGTTTCAGACGACAGGCTTTGTGATCCACAACTGTACAGTTGCTCCAAACGAAGATC 1498
Query 1499 TTAAACCCGTAAAGGCAGAGTTCAAGAGCTACCTCGGCCGGCCGTGGAAAACACATTCTC 1558
|||||||||||||||| ||||||||||||| ||||||||||| |||||| | |||||||
Sbjct 1499 TTAAACCCGTAAAGGCCCAGTTCAAGAGCTATCTCGGCCGGCCATGGAAACCCCATTCTC 1558
Query 1559 GAACCGTCGTGATGGAATCAACGATCGAGGATGTGATCGATCATGTTGGTTGGTTGAGAT 1618
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1559 GAACAGTCGTGATGGAATCAACGATCGAGGATGTGATCGATCCTGTTGGTTGGTTGAGAT 1618
Query 1619 GGCAAGAGACGGATTTTGCTATCGACACATTGTCTTATGCGGAATACAAGAATGATGGTC 1678
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1619 GGCAAGAGACGGATTTTGCTATCGATACATTGTCTTACGCGGAATACAAGAATGATGGTC 1678
Query 1679 CAAGCGGAGCAACCGTTTCTAGGGTTAAATGGCCTGGATTTAGGGTTTTAAACAAGGAAG 1738
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 CAAGCGGAGCAACCGCTGCTAGGGTTAAATGGCCTGGATTTAGGGTTTTAAACAAGGAAG 1738
Query 1739 AGGCGATGAAATATACGGTGGGGCCATTCTTACAAGGGGAATGGATCCGTGAGATGGGGT 1798
|||||||||||| ||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 1739 AGGCGATGAAATTTACGGTGGGGCCATTCTTACAAGGGGAATGGATCCAAGCGATAGGGT 1798
Query 1799 CTCCGGTTAAGCTTGGCCTTTATGATGCTT 1828
|||||||||||||||||||||| |||||||
Sbjct 1799 CTCCGGTTAAGCTTGGCCTTTACGATGCTT 1828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90561783180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5