BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353523
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33020.1 | Symbols: ZIP9, ATZIP9 | ZIP metal ion transporter... 1613 0.0
> AT4G33020.1 | Symbols: ZIP9, ATZIP9 | ZIP metal ion transporter
family | chr4:15932603-15934267 REVERSE LENGTH=1035
Length=1035
Score = 1613 bits (873), Expect = 0.0
Identities = 984/1037 (95%), Gaps = 10/1037 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCGATCCTTATCTCCGGAGCTGCCGGAGTCTCTATTCCTCTCA-TTGGAACCCT 59
|||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||
Sbjct 1 ATGGCGTCGATCCTTATCTCCGGAGCTGCCGGAGTCTCGATTCCTCT-AGTTGGAACCCT 59
Query 60 CCTCCCGTTAAACGGTGGCTTAATGCGAGGAGCTAAAGCGTTTGCTGCAGGAGTGATCCT 119
|| ||||||||||||||||||||| | ||||| |||||||| || |||||||| |||||
Sbjct 60 ACTTCCGTTAAACGGTGGCTTAATGAGGGGAGCCAAAGCGTTCGCAGCAGGAGTTATCCT 119
Query 120 CGCAACAGGGTTCGTTCACATGCTCTCCGGCGGAT-CACAAGCTTTGTCCGACCCGTGTC 178
||||||||||||||||||||||||||| ||||||| || |||||||||||||||| ||||
Sbjct 120 CGCAACAGGGTTCGTTCACATGCTCTCGGGCGGATCCA-AAGCTTTGTCCGACCCATGTC 178
Query 179 TGCCGGAGTTTCCATGGAAAATGTTCCCTTTCCCTGAATTCTTCGCCATGGTCGCCGCGC 238
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 179 TGCCGGAGTTTCCATGGAAAATGTTCCCTTTTCCAGAATTCTTCGCCATGGTCGCGGCGC 238
Query 239 TTCTCACTCTGCTCGCGGATTTCATGATTACCGGATACTACGAGAGGAAACAGGAGAAGA 298
|||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 239 TTCTTACTCTGCTCGCGGATTTCATGATCACGGGATACTACGAGAGGAAACAGGAGAAGA 298
Query 299 TGATGAACCAGTCAGTGGAGTCGCTTGGTACGCACGTTTCGGTTATATCTGACCCAAGTC 358
||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||| |||
Sbjct 299 TGATGAACCAGTCCGTCGAGTCGCTTGGTACGCAAGTTTCGGTTATGTCTGACCCAGGTC 358
Query 359 TTGAATCGGGTTTTCTGAGGGATCAAGAAGATGGAGGGGCGTTGCATATTGTGGGGATGC 418
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 359 TTGAATCGGGTTTTCTGAGAGATCAAGAAGATGGAGGGGCGTTGCATATCGTGGGGATGC 418
Query 419 GGGCTCACGCGGATCATCACCGTCATAGCCTCTCCATGGGTGCCGAAGGTTTTGAGGCTC 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGGCTCACGCGGAGCATCACCGTCATAGCCTCTCCATGGGTGCCGAAGGTTTTGAGGCTC 478
Query 479 TCGCAAAGAGAAGTGGAGTTTCCGGTCATGGACAC-G-----GCCACGGCCACGGCGACG 532
|| | ||||||||||| |||||||||||||||||| | ||||||||||||| ||||
Sbjct 479 TCTCTAAGAGAAGTGGTGTTTCCGGTCATGGACACGGCCACAGCCACGGCCACGGGGACG 538
Query 533 TAGGCTTGGACAGTGGTGTAAGGCACGTTGTTGTTTCTCAGATACTTGAAATGGGAATAG 592
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TAGGCTTGGACAGTGGTGTGAGGCACGTTGTTGTTTCTCAGATACTTGAAATGGGAATAG 598
Query 593 TGTCACATTCAATAATCATAGGAATATCGCTTGGAGTATCACATAGCCCATGCACCATAC 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGTCACATTCAATAATCATAGGAATATCGCTTGGAGTATCACATAGCCCATGCACCATAC 658
Query 653 GTCCTCTCCTTCTCGCTCTTTCCTTCCACCAATTCTTCGAAGGTTTCGCCCTGGGTGGCT 712
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 659 GTCCTCTCCTTCTCGCTCTTTCCTTCCACCAATTCTTCGAAGGTTTTGCCCTCGGTGGCT 718
Query 713 GCGTTGCAGAGGCCAGACTAACCCCGCGTGGATCTGCCATGATGGCTTTCTTCTTCGCCA 772
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GCGTCGCAGAGGCCAGACTAACCCCGCGTGGATCTGCCATGATGGCTTTCTTCTTCGCCA 778
Query 773 TCACTACTCCCATCGGTGTAGCCGTGGGAACGGCCATTGCCTCATCTTACAACTCTTATA 832
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 TCACTACTCCGATCGGTGTAGCGGTGGGAACGGCCATTGCCTCATCTTACAACTCTTATA 838
Query 833 GCGTTGCGGCATTGGTGGCTGAAGGAGTCCTCGATTCTCTCTCTGCGGGAATACTTGTTT 892
||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 839 GCGTTGCAGCATTGGTGGCTGAAGGAGTGCTCGATTCTCTCTCTGCGGGGATACTTGTGT 898
Query 893 ACATGGCGCTTGTGGATTTGATTGCTGCTGATTTCTTGAGCAAGAAGATGAGTGTTGATT 952
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 899 ACATGGCGCTTGTGGATTTGATCGCTGCGGATTTCTTGAGCAAGAAGATGAGTGTTGATT 958
Query 953 TCAGAGTTCAAGTTGTTTCTTATTGCTTTTTGTTTCTTGGAGCTGGGATGATGTCTGCTC 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCAGAGTTCAAGTTGTTTCTTATTGCTTTTTGTTTCTTGGAGCTGGGATGATGTCTGCTC 1018
Query 1013 TTGCTATTTGGACTTGA 1029
|||| |||||| |||||
Sbjct 1019 TTGCAATTTGGGCTTGA 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5