BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353533
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32930.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 701 0.0
> AT4G32930.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF866,
eukaryotic (InterPro:IPR008584). | chr4:15898835-15900289 FORWARD
LENGTH=675
Length=675
Score = 701 bits (379), Expect = 0.0
Identities = 482/527 (91%), Gaps = 26/527 (5%)
Strand=Plus/Plus
Query 1 ATGGTGAACTATGTGCTCAAAATCACCGCTGATCTCGAGAATCTGACTAATCTCCAGCCT 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 44 ATGGTGAACTATGTGCTCAAAATCACCGCTGATCTCGAGAATCTCACTAATCTCCAGCCT 103
Query 61 TCCGGTGGCTGCGACGATTCAAACTTCCCTTACCTCTTCAAGTTGAAATGTGAAAGATGC 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 104 TCCGGTGGCTGCGACGATTCCAACTTCCCTTACCTCTTCAAGTTGAAATGTGAAAGATGT 163
Query 121 GGAGAGGTGACTCCGAAAGAAACATGTGTTACTTTGAATGAGACTTTTACTCCTCCGGGA 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 164 GGAGAGGTGACTCCGAAAGAAACATGTGTGACTTTGAATGAGACTTTTACTCCTCCGGGA 223
Query 181 GGTA-GGG-----GT-A-CTTG-T----------C--ATCTT-G-TACAGA--AGTGTAA 215
|||| ||| || | |||| | | || || | | | || ||||||
Sbjct 224 GGTAGGGGTACTTGTCATCTTGTTCAGAAGAAAGCAAATATTGGCT-CTGATTTGTGTAA 282
Query 216 GTTCTGTGGAAGGGAAGGGAATGTGACTATGATTCCGGGCAAAGGTCGACCTTTAACTCT 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GTTCTGTGGAAGGGAAGGGAATGTGACTATGATTCCGGGCAAAGGTCGACCTTTAACTCT 342
Query 276 GGAAGATTCTGAGGCTGGAGAACATGCTCCTCTTATGGTGTTCGACTGTCGGGGATATGA 335
||||||||||||||||||||||||||| |||||||||||||| |||||||| || |||||
Sbjct 343 GGAAGATTCTGAGGCTGGAGAACATGCCCCTCTTATGGTGTTTGACTGTCGTGGCTATGA 402
Query 336 ACCCATAGATTTCGGCTTTGGTGGATATTGGAAAGCTGAATCTGAATCTGGAACCAAATT 395
|||||| |||||||| ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 403 ACCCATTGATTTCGGATTTGGTGGATATTGGAAAGCTCAAGCTGAATCTGGAACCAAATT 462
Query 396 TGATGACATTGATTTGTCAAGCGGGGAGGAATTCACAGAGTATGATGAGAAGGGAGAATG 455
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 463 TGATGAGATTGATTTGTCGAGCGGGGAGGAATTCACAGAGTACGATGAGAAGGGAGAATG 522
Query 456 CCCAGTAATGATATCGAACTTCCGTGCAAGCTTCAGCGTCACCAAGT 502
|||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 523 CCCAGTAATGATATCGAATTTCCGTGCAAGCTTCAGCGTCACCAAGT 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24062156413
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5