BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353547
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32810.1 | Symbols: CCD8, MAX4, ATCCD8 | carotenoid cleavage... 2695 0.0
> AT4G32810.1 | Symbols: CCD8, MAX4, ATCCD8 | carotenoid cleavage
dioxygenase 8 | chr4:15828228-15831485 FORWARD LENGTH=2019
Length=2019
Score = 2695 bits (1459), Expect = 0.0
Identities = 1630/1714 (95%), Gaps = 6/1714 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTTGATCACAACCAAAGCAATGATGAGTCATCATCATGTTTTGTCGTCAACT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGGCTTCTTTGATCACAACCAAAGCAATGATGAGTCATCATCATGTTTTGTCGTCAACT 180
Query 61 AGAATCACTATTCATTATTCCGACAATTCCATCGGCCAGCAACAATTAAAAACAAAATTC 120
|||||||||| || |||||||||||||||||||||| | |||||| ||||||||||| |
Sbjct 181 AGAATCACTACTCTTTATTCCGACAATTCCATCGGCGATCAACAAATAAAAACAAAA-CC 239
Query 121 -CAAGTCCCTCACCGATTATTTGCACGGAGGGTCTTCGGTGTAACCAGAGCTGTAATCAA 179
|||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||
Sbjct 240 TCAAGTCCCTCACCGGTTATTTGCTCGGAGGATCTTCGGTGTAACCAGAGCTGTAATTAA 299
Query 180 TTCACCCGCACCGTCTCCGTTGCCGGAGAAAGAGAAGGTGGAAGGTGAGAGACGGTGTCA 239
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCAGCGGCACCGTCTCCGTTGCCGGAGAAAGAGAAGGTGGAAGGTGAGAGACGGTGTCA 359
Query 240 TGTTGCGTGGACAAGTGTACAACAAGAGAAGTGGGAGGGTGAGCTTACTGTCCAAGGAAA 299
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 360 TGTTGCGTGGACAAGTGTACAACAAGAGAATTGGGAGGGTGAACTTACTGTCCAAGGAAA 419
Query 300 GATACCCACTTGGCTGAATGGTACGTACCTAAGAAACGGTCCCGGTCTGTGGAACATTGG 359
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 420 GATACCCACTTGGCTGAATGGTACGTACCTAAGAAACGGTCCTGGTCTATGGAACATTGG 479
Query 360 AGACCACGATTTCCGTCATCTCTTCGACGGCTACTCCACACTCGTCAAGCTTCAATTCGA 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGACCACGATTTCCGGCATCTCTTCGACGGCTACTCCACACTCGTCAAGCTTCAATTCGA 539
Query 420 CGGCGGTCGTATATTCGCCGGCCACCGTCTCCTTGAATCCGACGCCTACAAAGCAGCCAA 479
||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 540 TGGCGGTCGTATATTCGCCGCCCACCGTCTCCTTGAATCCGACGCTTACAAAGCCGCCAA 599
Query 480 GAAACACAATCGGCTTTGTTACCGTGAATTCTCCGAGACTCCAAAACCGGTGATCATAAA 539
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 GAAACACAATAGGCTTTGTTACCGTGAATTCTCCGAGACTCCAAAATCGGTGATCATAAA 659
Query 540 CAAAAACCCTTTCTCCGGGATCGGAGAAATCGTCAGACTTTTCTCCGGTGAGTCTTTAAC 599
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 660 CAAAAACCCTTTCTCCGGGATCGGAGAAATCGTCAGGCTTTTCTCCGGAGAGTCTTTAAC 719
Query 600 CGACAACGCAAACACTGGAGTGATCAAACTCGGTGACGGGCGGGTCATGTGTCTCACGGA 659
|||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 GGACAACGCCAACACCGGAGTGATCAAACTCGGTGACGGGCGGGTCATGTGTCTGACGGA 779
Query 660 GACTCAAAAAGGATCGATTTTAGTCGACCATGAGACGCTCGAGACGATCGGGAAATTCGA 719
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 780 GACTCAAAAAGGATCGATTTTAGTCGACCATGAGACGCTAGAGACGATCGGGAAATTTGA 839
Query 720 ATACGACGACGGATTGTCCGATCATATGATCCAGTCAGCGCATCCGATAGTGACGGAGAC 779
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 GTACGACGACGTATTGTCCGATCATATGATCCAATCAGCGCATCCGATAGTGACGGAGAC 899
Query 780 GGAGATGTGGACGTTGATACCGGATTTGGTTAAACCGGGTTATCGGGTCGTGAGAATGGA 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 GGAGATGTGGACGTTGATACCGGATTTGGTTAAACCGGGTTATCGGGTCGTGAGGATGGA 959
Query 840 GGCCGGGTCGAATAAAAGAGAGGTTGTGGGGCGGGTGAGATGTCGGAGCGGGTCGTGGGG 899
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 960 AGCCGGGTCGAATAAAAGAGAGGTTGTGGGGCGGGTGAGGTGTCGAAGTGGGTCGTGGGG 1019
Query 900 ACCCGGTTGGGTCCATTCGTTTGCCGTGACGGAGAATTATGTTGTGATACCGGAAATGCC 959
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1020 ACCCGGTTGGGTCCATTCGTTTGCGGTGACGGAGAATTATGTTGTAATACCGGAAATGCC 1079
Query 960 CCTGAGGTATTCGGTGAGGAATCTTCTTAGAGCTGAGCCGACGCCACTTTACAAGTTCGA 1019
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CCTGAGATATTCGGTGAAGAATCTTCTTAGAGCTGAGCCGACGCCACTTTACAAGTTCGA 1139
Query 1020 GTGGTGTCCCGAAGACGGAGCTTTTCTTCATGTCATGTCCAAACTCACCGGAGAAGTCGT 1079
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1140 GTGGTGTCCCCAAGACGGAGCTTTTATTCATGTCATGTCCAAACTCACCGGAGAAGTCGT 1199
Query 1080 GGCGAGCGTGGAGGTACCAGCATTCGTAACGTTTCACTTCATAAACGCGTACGAAGAAGA 1139
||| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1200 GGCTAGCGTGGAGGTTCCAGCATACGTAACGTTTCACTTCATAAACGCGTATGAAGAAGA 1259
Query 1140 TGAAAATGGCGATGGAAAAGCGACGGTCATCATTGCAGATTGTTGTGAACACAACGCGGA 1199
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1260 TAAAAATGGCGATGGAAAAGCGACGGTCATCATTGCAGATTGTTGTGAACACAACGCCGA 1319
Query 1200 TACTCGGATACTCGATATGCTCCGTCTAC-ATACCCTACGTTCCTCCCATGGTCATGACG 1258
||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||
Sbjct 1320 TACTCGGATACTCGATATGCTCCGTCT-CGATACCCTACGTTCTTCCCATGGTCACGACG 1378
Query 1259 TTTTACCGGATGCTAGGATCGGGAGATTCAGGATACCGTTAGACGGGAGCAAATACGGGA 1318
||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1379 TTTTACCCGATGCTAGGATCGGGAGATTCAGGATACCATTGGACGGGAGCAAATACGGGA 1438
Query 1319 AGCTGGAAACGGCCGTGGAGGCAGAGAAGCATGGGAGGGCGATGGATATGTGCAGCATCA 1378
| || || || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1439 AACTAGAGACAGCCGTGGAGGCAGAGAAGCATGGGAGAGCGATGGATATGTGCAGCATCA 1498
Query 1379 ATCCTTTGTATTTGGGTCAAAAATACCGTTACGTTTATGCATGCGGTGCTAAACGACCTT 1438
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1499 ATCCTTTGTATTTGGGTCAAAAATACCGTTACGTTTATGCATGCGGTGCTCAACGACCTT 1558
Query 1439 GCAACTTCCCCAATGCTCTCTCCAAGGTTGATATTGTGGAGAAGAAGGTAAAGAACTGGC 1498
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1559 GTAACTTCCCCAATGCTCTCTCCAAGGTTGATATTGTGGAGAAGAAAGTGAAGAACTGGC 1618
Query 1499 ACGAACACGGTATCATACCATCCGAACCATTCTTTGTGCCTCGACC-GGATGCAACACAT 1557
|||| || ||||| |||||||| ||||||||||| ||||||||||| || |||||| |||
Sbjct 1619 ACGAGCATGGTATGATACCATCTGAACCATTCTTCGTGCCTCGACCCGG-TGCAACCCAT 1677
Query 1558 GAGGATGATGGAGTGGTGATATCGATAGTAAGTGAAGAAAATGGAGGAAGCTTTGCAATC 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 GAGGATGATGGAGTGGTGATATCGATAGTAAGTGAAGAAAATGGAGGAAGCTTTGCAATC 1737
Query 1618 TTACTTGATGGGAGCACCTTTGAAGAAATAGCAAGAGCCAACTTTCCTTATGGTCTTCCT 1677
|| |||||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1738 TTGCTTGATGGGAGCTCCTTTGAAGAAATAGCAAGAGCCAAGTTTCCCTATGGCCTTCCT 1797
Query 1678 TATGGTTTGCATGGTTGCTGGATCCCCAAACATT 1711
||||| |||||||||||||||||||||||| |||
Sbjct 1798 TATGGCTTGCATGGTTGCTGGATCCCCAAAGATT 1831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84688319415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5