BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353556
Length=2166
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32710.1 | Symbols: | Protein kinase superfamily protein | ... 2019 0.0
> AT4G32710.1 | Symbols: | Protein kinase superfamily protein
| chr4:15781045-15783461 FORWARD LENGTH=1618
Length=1618
Score = 2019 bits (1093), Expect = 0.0
Identities = 1272/1357 (94%), Gaps = 17/1357 (1%)
Strand=Plus/Plus
Query 795 GAGTCTGCCTG-AGACGACGTCGTATCACCGATCTTCCGCCGGATTCTTATTTGGCGGTG 853
|||||| |||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 GAGTCTACCTGTA-ACGACGTCGTATCACCGATCATCCGCCGGATTCTTATTTGGCGGTG 59
Query 854 TAATCGTTGGAGCACTTCTACTTGTTCTGTTAGGTCTTCTCTTTGTCTTTTACAGAGCTA 913
||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 60 TAATCGTTGGAGCTCTTCTACTAATTCTGTTAGGTCTTCTCTTTGTCTTCTACAGAGCTA 119
Query 914 CCAGAAATAGAAATAACAACAACAGCTCTGCTCATTATCAATCCAAAACTCCCTCAAAAG 973
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 120 CCAGAAATAGAAATAACAACAGCAGCTCTGCTCATCATCAATCCAAAACTCCCTCAAAAG 179
Query 974 TTCAACATCATCGGGGCGGTAATACCGGTCCAAACCAGGCACATGTTATCACAATGCCAC 1033
||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||
Sbjct 180 TTCAACATCATCGGGGCGGTAATGCTGGTACGAACCAGGCACATGTTATCACAATGCCAC 239
Query 1034 CTCCAATCCATACTGCACCACCTAAATATTTATCTAGTGGAGGCAATGGTACTAAAGAGA 1093
| ||||||| | || |||||||| ||||||||||||| || ||| || ||||
Sbjct 240 CACCAATCC--A-TG------CTAAATATATATCTAGTGGAGGTTGTGATACGAAGGAGA 290
Query 1094 ACAATTCTGTTGCAAAAAACATTACAATGCCATCTGGAATGTTCACCTACGAAGAACTTT 1153
||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 291 ACAATTCTGTTGCGAAAAACATTTCAATGCCATCTGGAATGTTCTCCTACGAAGAACTTT 350
Query 1154 CGGAAGCAACAT-GTGGATTTTCAGAGGCGAACCTTTTGGGGGAAGGCGGTTTCGGTTAT 1212
| ||||||| | ||||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct 351 CAAAAGCAAC-TGGTGGATTTTCAGAGGAGAACCTTTTGGGAGAAGGCGGTTTCGGATAT 409
Query 1213 GTTCACAAAGGAGTGCTT-AAAAACGGGACAGAAGTTGCGGTGAAGCAGCTGAAGATTGG 1271
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 410 GTTCACAAAGGAGTG-TTGAAAAACGGGACAGAAGTTGCGGTGAAGCAGCTGAAGATTGG 468
Query 1272 GAGCTATCAAGGGGAAAGAGAATTCCAAGCTGAGGTTGACACAATCAGTAGGGTTCATCA 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GAGCTATCAAGGGGAAAGAGAATTCCAAGCTGAGGTTGACACAATCAGTAGGGTTCATCA 528
Query 1332 TAAGCATCTTGTTTCATTGGTTGGTTATTGCGTTAACGGAGATAAAAGACTCTTGGTTTA 1391
|||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 529 TAAGCACCTCGTTTCATTGGTTGGTTATTGCGTTAATGGAGATAAAAGACTCTTGGTTTA 588
Query 1392 CGAGTTTGTTCCTAAAGATACCTTGGAGTTCCACTTGCATG-GAAACAGAGGAAGTGTGT 1450
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||
Sbjct 589 CGAGTTTGTTCCTAAAGATACCTTGGAGTTCCACTTGCATGAGAA-CAGAGGAAGCGTGT 647
Query 1451 TAGAGTGGGAAATGAGGCTCAGGATTGCTGTAGGAGCAGCAAAAGGATTAGCATATCTTC 1510
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 648 TGGAATGGGAAATGAGGCTCAGGATTGCTGTAGGAGCAGCAAAAGGATTAGCTTATCTTC 707
Query 1511 ATGAGGATTGCAGTCCAACTATAATTCACCGTGATATCAAAGCAGCTAATATCCTTCTAG 1570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 ATGAGGATTGCAGTCCAACTATAATTCACCGTGATATCAAAGCAGCTAATATCCTTCTAG 767
Query 1571 ATTCCAAATTTGAGGCAAAGGTCTCTGACTTTGGACTAGCCAAGTTTTTCTCAGACACCA 1630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 ATTCCAAATTTGAGGCAAAGGTCTCTGACTTTGGACTAGCCAAGTTTTTCTCAGACACCA 827
Query 1631 ATTCATCATTCACTCATATCTCTACTCGAGTGGTAGGAACTTTCGGATACATGGCTCCAG 1690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 ATTCATCATTCACTCATATCTCTACTCGAGTGGTAGGAACTTTCGGATACATGGCTCCAG 887
Query 1691 AATACGCGTCTAGTGGTAAAGTAACTGACAAATCAGATGTATATTCATTTGGGGTTGTGC 1750
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 888 AATACGCGTCCAGTGGTAAAGTAACTGATAAATCAGATGTATATTCCTTTGGGGTCGTGC 947
Query 1751 TTCTTGAACTCATCACTGGACGTCCATCAATTTTCCCCAAAGATCCTACCACAAACCAGA 1810
|||| |||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 948 TTCTAGAACTCATCACTGGACGTCCATCAATTTTCGCCAAAGATTCTTCCACAAACCAGA 1007
Query 1811 GTTTAGTTGACTGGGCAAGACCATTGCTGGCTAAAGCAATCTCTGGAGAGAGCTTCGACC 1870
||||||| |||||||| || |||||||| | ||||||||||||||||| || || |||
Sbjct 1008 GTTTAGTAGACTGGGCGAGGCCATTGCTTACGAAAGCAATCTCTGGAGAAAGTTTTGACT 1067
Query 1871 TTCTTGTAGACCCGAGGTTGGTTAAGAATTACGATTCAACCCAGGTGGCAAACATGGCTG 1930
||||||||||| | ||||||| |||||||||||| |||| ||| |||||||||||||||
Sbjct 1068 TTCTTGTAGACTCAAGGTTGGAGAAGAATTACGATACAACTCAGATGGCAAACATGGCTG 1127
Query 1931 CTTGTGCTGCTGCTTGCATACGCCAATCAGCTTGGCTTCGCCCCCGAATGAGCCAGGTAG 1990
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1128 CTTGTGCTGCTGCTTGCATACGCCAATCAGCTTGGCTTCGGCCTAGAATGAGCCAGGTAG 1187
Query 1991 TACGTGCCCTTGAAGGCGAGGTGGCCCTAAGAAAGGTCGAAGAGACGGGGAATAGCGTGA 2050
||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1188 TACGTGCTCTTGAAGGCGAGGTGGCCCTGAGAAAGGTCGAAGAGACTGGGAATAGCGTGA 1247
Query 2051 CTTATAGCTCTTCTGAAAACCCGAATGACATCACACCACGGTATGGAACAAATAAGAGGA 2110
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 CCTATAGCTCTTCTGAAAACCCGAATGACATCACACCACGGTATGGAACAAATAAGAGGA 1307
Query 2111 GATTCGACACAAGTTCAAGCGATGGTTACACTTCAGA 2147
||||||||||| |||||||||||||||||||||||||
Sbjct 1308 GATTCGACACAGGTTCAAGCGATGGTTACACTTCAGA 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107429166300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5