BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353559
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32680.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 977 0.0
> AT4G32680.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G52343.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:15763237-15765114 REVERSE LENGTH=1149
Length=1149
Score = 977 bits (529), Expect = 0.0
Identities = 605/641 (94%), Gaps = 7/641 (1%)
Strand=Plus/Plus
Query 277 GCTTTCACAAGTCACCAGGAAAACATCTCTGATGCTG-AGATGCTTGATAATGTGGATCA 335
|||||||||||||||||||| |||||||||||||||| | |||||||| |||||||||||
Sbjct 286 GCTTTCACAAGTCACCAGGACAACATCTCTGATGCTGCA-ATGCTTGAGAATGTGGATCA 344
Query 336 TATAATCCATCAAAGCAGGGCAGAATCGCTTCAGCCTCAGAGGCATGCTGAAACATTGGC 395
||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 345 TATCATCCATCAAAGCAGGGAAGAACCTCTTCAGCCTCAGAGGCATGCTGAAACATTGGC 404
Query 396 AGAAGCCTCTGGTGCAGATCCTAGAG--AC-GCAACAATACAACCGTCTCCTACAACATC 452
||||||||||| | |||||||||||| || |||||||||||||| |||||||||||||
Sbjct 405 AGAAGCCTCTGCTTCAGATCCTAGAGACACAACAACAATACAACCGCCTCCTACAACATC 464
Query 453 AAGTGTTCAAAACCCATCAGTGGTAAATTTAGGTGCTTCTCAAGCATTTATTCCTGTGGT 512
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 465 AAGTGTTCAAAACCCATCAGTGGTAGATTTAGGTGCTTCTCAAGCATTTATTCCTGTGGT 524
Query 513 TAGTTTTGTGAACGCCATCACGCCAAAACACATTGGAGCGGCCATTGATGCTTCAGAATA 572
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 525 TAGTTTTGTGAACGCCATCACACCAAAGCACATTGGAGCGGCCATTGATGCTTCGGAATA 584
Query 573 CGCACGGATGTTCACAGCTCTTGCGATTGCACTTGTTGTCATACTATCTCATCTCGGTTT 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 CGCACGGATGTTCACAGCTCTTGCGATTGCACTTGTTGTCATACTATCTCATCTCGGTTT 644
Query 633 CTCTTCCCTAGGCAACATAGTAAGCTTCAGGCCAGTTTTCTTGCTTCTGTTGACCGATGC 692
|||||||||||||||||| ||||||||||||||||||||||||||| | ||||| |||||
Sbjct 645 CTCTTCCCTAGGCAACATTGTAAGCTTCAGGCCAGTTTTCTTGCTTGTCTTGACTGATGC 704
Query 693 CACAATTGTGCTTGGACGTGTTCTGCTGAGTCATCATGGAGATTCTTCCTCAGCTTCAGG 752
||||||||||||||||||||||||||||||||||| |||||| |||||||| || |||||
Sbjct 705 CACAATTGTGCTTGGACGTGTTCTGCTGAGTCATCGTGGAGACTCTTCCTCGGCCTCAGG 764
Query 753 GACAGTAATGAGCGGGCAAGGTAT-GATGGACCAAGTAGGCAACGCTTTGGAGATGGTGA 811
||| || ||||||||||| ||||| | ||||||||||||||||||||||||||| |||||
Sbjct 765 GACGGTGATGAGCGGGCAGGGTATTG-TGGACCAAGTAGGCAACGCTTTGGAGACGGTGA 823
Query 812 TGATGATGAAGAAGATAATGGATGCACTTCTTATGGATTTTAGCTTATACGCTGTGATTC 871
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TGATGGTGAAGAAGATAATGGATGCACTTCTTATGGATTTTAGCTTATACGCTGTGATTC 883
Query 872 TCATATGTGGCCTATTGGTCACCCAAAACATCTTTCCTTAG 912
||||||||||||| ||||||||||||| |||||||||||||
Sbjct 884 TCATATGTGGCCTCTTGGTCACCCAAAGCATCTTTCCTTAG 924
Score = 244 bits (132), Expect = 9e-64
Identities = 185/209 (89%), Gaps = 9/209 (4%)
Strand=Plus/Plus
Query 1 ATGTCGTCGAACAGCAGAGAAGCCAGGAGGCGGAAGATTCTAGAAAGAGGATCTGATCGT 60
||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 76 ATGGCGTCGAACAGCAGAGAAGCCAGGAGGCGGAAGATCCTAGATAGAGGATCTGATCGT 135
Query 61 TTAGCCTTTATCACTGGTCAGATCAACGGCGCTCATCCTCCTCCTCCTTCCGATTCTCCT 120
||||||||||||||||||||||||||||||| || | |||| ||||||||||||||| ||
Sbjct 136 TTAGCCTTTATCACTGGTCAGATCAACGGCGTTCCTTCTCCACCTCCTTCCGATTCTACT 195
Query 121 TCTTCCCTTTCCCCGTCTCATCTCCAA--T--C-A-TC---ACCGGACACGATTCCCCCT 171
||||||||||||| |||| | || ||| | | | || |||||| ||||||||||||
Sbjct 196 TCTTCCCTTTCCCAGTCTGACCTTCAAACTGACCAATCCTTACCGGATACGATTCCCCCT 255
Query 172 CGTGAACAGATTCTTAAAGCTCAAGAAAT 200
|| || |||||||||||||||||||||||
Sbjct 256 CGCGATCAGATTCTTAAAGCTCAAGAAAT 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5