BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353574
Length=2307
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26480.1 | Symbols: | Transducin family protein / WD-40 rep... 3518 0.0
AT3G26470.1 | Symbols: | Powdery mildew resistance protein, R... 536 3e-151
> AT3G26480.1 | Symbols: | Transducin family protein / WD-40 repeat
family protein | chr3:9687273-9690827 REVERSE LENGTH=2295
Length=2295
Score = 3518 bits (1905), Expect = 0.0
Identities = 2181/2313 (94%), Gaps = 24/2313 (1%)
Strand=Plus/Plus
Query 1 ATGATTCGCGGCGGAAGAAACAACATTACTTCCGCTCCGGCGTTTTCGAAAGACGCAAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATTCGCGGCGGAAGAAACAACATTACTTCCGCTCCGGCGTTTTCGAAAGACGCAAAG 60
Query 61 AAGCTTCTTCTATGCACAGCCAACACCGTCTCTGTTTACCGCGTCGCCACTGGCTTAAAG 120
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 AAGCTTCTTTTATGCACAGCCAACACCGTCTCTGTTTACAGCGTCGCCACTGGCTTAAAG 120
Query 121 ATTACTTCACTCGAGGATCATACAGCACCTGTGACGACTGTGATTGTTGATATGGCGTCC 180
|||||||||||||||||||||||||| ||||||||| |||||||||||||| | | |||
Sbjct 121 ATTACTTCACTCGAGGATCATACAGCGCCTGTGACGTCTGTGATTGTTGATCCGTCTTCC 180
Query 181 AACGAGACCCACAGTTACTGTTGGACTTCGTCGCTCGATGGGAAAATTCGGATTTGGGAG 240
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GACGAAACCGTCAGTTACTGTTGGACTTCGTCGCTCGATGGGAAAATTCGGATTTGGGAG 240
Query 241 TTCTCTGCGCCGAAGCTTTTGAAGACATTTGATACCCACCTTCCAATTCACTCTCTGGTG 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 TTCTCTGCGCCGAAGCTTTTGAAGATATTTGATACCCACCTTCCAATTCACTCTCTGGTG 300
Query 301 ATGATTCCATCTCACGTGTCACACTCCGTGATTGCTTATGTTTCGGTTGAGGACTATTCA 360
||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGATTCCAGCTCAAGTGTCACATTCCGTGATTGCTTATGTTTCGGTTGAGGACTATTCA 360
Query 361 AGTGTGTCCAGTGATTTGTTTGGACAAATCCGGAGATATGATCTCACTGAAGAGCCTCTT 420
|||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 361 AGTGTGTCCAAAGATTTGTTTGGACAAATCCGGAGATATGATCTCACTCAAGACCCTCTT 420
Query 421 CCTAGTGGAGACATTTTGAAAGAGATGGAAGAACCAAAACCTATTGTTCTAAGTCCCT-T 479
| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 421 CATAGTGGAGACACTTTGAAAGAGATGGAAGAACCAAAACCTATTGTTTTAAGTCCCTCT 480
Query 480 AGGAGATTTTTTCGGCGTCAGTCGTAGTTGCAATATACATATATGGAATGCCTCTCTTGG 539
||||| |||||||||||| ||| || |||| ||||||||||||||||| |
Sbjct 481 -GGAGAGTTTTTCGGCGTCTGTCATAACTGCAGTATACATATATGGAATG-------T-- 530
Query 540 GGCATCAGAGCATCTCAAGCCAAAGGAGACGACATTACATCACACAGAGTTGATTACTGT 599
|||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 531 GGCATCAGAGCACCTCATGCCAAAGGAGACGACATTACATCATACAGAGTTGATTACTGT 590
Query 600 TTTTGCTTTCCATCCCAATCAGAGAATATTAGCAGCCGGTGATGTAAAAGGAAGAGTGTT 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 591 TTTTGCTTTCCATCCCAATCAGAGAATATTAGCAGCCGGTGATGTAACAGGAAGAGTGTT 650
Query 660 AATTTGGAAGGATATTGGTAATGGAGAACTTACTTCAGTGAAAAGTGAAGGTGATCCTGA 719
|||||||||||||| ||||| ||||||| ||||||||||||||| ||||| |||| ||||
Sbjct 651 AATTTGGAAGGATAATGGTATTGGAGAATTTACTTCAGTGAAAACTGAAGATGATACTGA 710
Query 720 ATCTTGCACTGCATTCAACTGGCACTCCGCTGAAGTAACCGTCCTTAATTTCTCTTCAGA 779
|||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 711 ATCTTGCACTACTTTCAACTGGCACAGCGCTGAAGTAACCGTCCTTAATTTCTCTTCAGA 770
Query 780 TGGAGCACTGTTGTATTCTGGGGTAAAGGAAGGTGTTTTTGTTGTTTGGGAGCTAGATAC 839
||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 771 TGGAGCACTTTTGTATTCTGGGGTAAAGGCAGGTGATTTTGTTGTTTGGGAGCTAGGTAC 830
Query 840 AAGGAAAAAGCAACTTTTGCCAAAGATTGGATC-CCCGTTGTTGTATTTCATCTCCTCTT 898
| |||| |||||||||||||||||||||||||| ||| |||||||||||||||| |||||
Sbjct 831 AGGGAAGAAGCAACTTTTGCCAAAGATTGGATCTCCC-TTGTTGTATTTCATCTTCTCTT 889
Query 899 CAGATCCAACTCTTTCTTCTGTGATTTGTGCAGATAATCAGATTCATCTT-TTAAAAATG 957
||||| |||||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 890 CAGATTCAACTCTTTCTTCTGTGATTTGTGCAGATAATCAAATTCATCTTCTT-AAAATG 948
Query 958 CCTTCCATGGAGATACTGAGAACGATATCTGGAATCAAGCCTCGGAGATCAGAGCGTCAC 1017
||||||||||||||| ||||||||||||||||||||||||||| || | |||||||||||
Sbjct 949 CCTTCCATGGAGATATTGAGAACGATATCTGGAATCAAGCCTCCGACACCAGAGCGTCAC 1008
Query 1018 GGGTTTATATGCTACGTTAAAACGAGGGATATATGCCTCACCAGAACTGTGTCCATTGAT 1077
||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1009 GGGTTTATATGCTACGTCAAAACGCGGGATATATGCCTCACCAGAACTGTATCCATTGAT 1068
Query 1078 CGTTCTTCCGGTATAGCTGCTTTCTGTGCAGAGAATCATCGTGTTCAACTCTACAACCTT 1137
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1069 CGTTCTTCCGGTATAGCTGCTTTCTGCACAGCGAATCATCGTGTTCAACTCTACAACCTT 1128
Query 1138 TTAAGTGACCATGAAATTTCAGAGGTTCAAATTTGCGAGAGAAATCATCATCCAGACG-- 1195
|||||||||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 1129 TTAAGTGACCATGACATTTCAGAGGTTCAAATTTGC----G--ATCATCATCCAGACGAT 1182
Query 1196 G-TGATGAAGTCCGGGTTCTCGTGACTGCGGTTGCTCTCTCTCGGAATGGCTCAGTGATG 1254
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1183 GATGATCAAGTCCGGGTTCTCGTGACTGCGGTTGCTCTCTCTCGGAATGGCTCAGTAATG 1242
Query 1255 ACTACAGCTGATGCCAGATTTGCTGCAAGCAATTTCAGTGAAGGCTTAGTTTCTCTCAAG 1314
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1243 ACTACAGCTGAGGCCAGATTTGCTGCAAGCAATTTCAGTGAAGGCATAGTTTCTCTCAAG 1302
Query 1315 TTTTGGGTGTTTGTACCGGACAGCAAAACTTTCAGCTTATCGACAGTCATAAATCAACCT 1374
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 TTTTGGGTATTTGTACCGGACAGCAAAACTTTCAGCTTATCGACAGTCATAAATCAACCT 1362
Query 1375 CACAGGGAAGCTGCTATCACAGCCATTGCCCTTAACCCCGCCCGTTCCATGGCTGTTAGT 1434
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 CACAGGGAAGCTGCAATTACAGCCATTGCCCTTAACCCCGCCCGTTCCATGGCTGTTAGT 1422
Query 1435 ATATCTTCTGCTGGGGACTTCAAGATTTGGGTTTGCAATAGCGACAAGAATCTGACACCT 1494
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1423 ATATCTTCTGCTGGGGACTTCAAGATTTGGGTTTGCAGTAGCGACAAGAATCTGACACCT 1482
Query 1495 GAGGATTCAAACTGGATATGTCATGGAGATGGCTCTTACAAGAGAACGCCAATAACAGCT 1554
||||| ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1483 GAGGACTCAAACTGGATTTGTCATGGAGTTGGCTCTTATAAGAGAACGCCAATAACAGCT 1542
Query 1555 GCTGTTTTTTCCGGGGATGGTTCTTGTCTGGCTATTGCGGCTAAAACAGTTATTACGATC 1614
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1543 GCTGTTTTTTCCGGGGATGGTTCTTGTCTGGCTCTTGCGGCTAAAACAGTTATTACGATC 1602
Query 1615 TGGCACCCGTTAAAGAACGAACTCTTGTATGTAGTTGGAAAGGCAAATGCGACAATTATG 1674
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1603 TGGCACCCGTTAAAGAACGAACTCCTGTATGTAGTTGGAAAGGCAAATGCGCCAATTATG 1662
Query 1675 GAACTCTCATTCACTGGAGGAGGCTTCCTTATTGCTGCATCCCATGGTTCCACACCGCAC 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 GAACTCTCATTCACTGGAGGAGGCTTCCTTATTGCTGCATCCCATGGTTCCACACCGCAC 1722
Query 1735 TTATCTGTCTGGGATTTGATGACGTTCTGCTTATCATGGTCTTATAGATTATACATAGAA 1794
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1723 TTATCTGTCTGGGATCTGATGACGTTCTGCTTATCATGGTCATATAGATTATACATAGAA 1782
Query 1795 GCCATTGCCACTGAAGTGGGCTCGCCATACTTTGCAGTATTAACATGGCTTCCAGAATCT 1854
|||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 1783 GCCATTGCTACTGAAGTGGACTCACCATACTTTGCAGTTTTAACATGGCTTCCAGAATCT 1842
Query 1855 GATAGGTTGGTAAAATCTAACGGACAAATGTTCTGCGGGAAAGATGGTGCTATTCTCTTG 1914
|||||||||||||||||||||| ||| || ||| ||||||||||||||||||| ||||||
Sbjct 1843 GATAGGTTGGTAAAATCTAACGAACAGATATTCCGCGGGAAAGATGGTGCTATCCTCTTG 1902
Query 1915 TTTGATGGGTCAGGCCCTAAACCAGTAGCTATTTGGACTGTAATGAAGGCCAGGGGAGGA 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1903 TTTGATGGGTCAGGCCCTAAACCAGTAGCTATTTGGACTGTAATGAAGGCCAGAGGAGGA 1962
Query 1975 ACGCTTTCATTTGTGGAAGATGGTAAAAAGTCTCAGCCACTTCTCGCATATGTAAACAGG 2034
|| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1963 ACACTTTCATTTGTGGAAGATGGTAAAAAGTCTCAGCCGCTTCTCGCGTATGTAAACAGG 2022
Query 2035 AGCCATGAATATGTTCTTTTTGATCCTTATGGCGATGAAAAACTCGAGACTAGCGCCATA 2094
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 2023 AGCCATGAATATGTTCTATTTGATCCTTATAGCGATGAAAAACTCGAGACTAGCGCCATA 2082
Query 2095 GATTATGAAGTTTTTCTTGCAGCAATAAGCAAGAAGACGAAGAGATCTAGGAAGAAAGCA 2154
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 2083 GATTATGAAGTTTTTCTTGCAGCAATAAGCAAAAAGAAGAAGAGATCTAGGAAGAAAGCA 2142
Query 2155 TTGATGTCAGAGAAACCTTGGGAAACAAACTTTTGTGGATCAACGCTCAATTTCCCGCCT 2214
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2143 TTGATGTCAGAGAAACCTTGGGAAACAATGTTTTGTGGATCAACACTCAATTTCCCGCCT 2202
Query 2215 TTCCCCGACGTGTGCTCTGCTTTCTTCAGTTCCCGGATGCAGAAAAAGGTGTGTgagaga 2274
||||||||| ||||| || | |||||||||||||||||||||||| ||||||||||||||
Sbjct 2203 TTCCCCGACTTGTGCGCTTCGTTCTTCAGTTCCCGGATGCAGAAAGAGGTGTGTGAGAGA 2262
Query 2275 gcagagagagaACCTGAAAGTCATAGCTCTTGA 2307
||||| ||| |||||||||| ||||||||||||
Sbjct 2263 GCAGATAGACAACCTGAAAGACATAGCTCTTGA 2295
> AT3G26470.1 | Symbols: | Powdery mildew resistance protein,
RPW8 domain | chr3:9686098-9687642 FORWARD LENGTH=1454
Length=1454
Score = 536 bits (290), Expect = 3e-151
Identities = 328/347 (95%), Gaps = 0/347 (0%)
Strand=Plus/Minus
Query 1961 AGGCCAGGGGAGGAACGCTTTCATTTGTGGAAGATGGTAAAAAGTCTCAGCCACTTCTCG 2020
||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1431 AGGCCAGAGGAGGAACACTTTCATTTGTGGAAGATGGTAAAAAGTCTCAGCCGCTTCTCG 1372
Query 2021 CATATGTAAACAGGAGCCATGAATATGTTCTTTTTGATCCTTATGGCGATGAAAAACTCG 2080
| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1371 CGTATGTAAACAGGAGCCATGAATATGTTCTATTTGATCCTTATAGCGATGAAAAACTCG 1312
Query 2081 AGACTAGCGCCATAGATTATGAAGTTTTTCTTGCAGCAATAAGCAAGAAGACGAAGAGAT 2140
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1311 AGACTAGCGCCATAGATTATGAAGTTTTTCTTGCAGCAATAAGCAAAAAGAAGAAGAGAT 1252
Query 2141 CTAGGAAGAAAGCATTGATGTCAGAGAAACCTTGGGAAACAAACTTTTGTGGATCAACGC 2200
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1251 CTAGGAAGAAAGCATTGATGTCAGAGAAACCTTGGGAAACAATGTTTTGTGGATCAACAC 1192
Query 2201 TCAATTTCCCGCCTTTCCCCGACGTGTGCTCTGCTTTCTTCAGTTCCCGGATGCAGAAAA 2260
||||||||||||||||||||||| ||||| || | ||||||||||||||||||||||||
Sbjct 1191 TCAATTTCCCGCCTTTCCCCGACTTGTGCGCTTCGTTCTTCAGTTCCCGGATGCAGAAAG 1132
Query 2261 AGGTGTGTgagagagcagagagagaACCTGAAAGTCATAGCTCTTGA 2307
||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 1131 AGGTGTGTGAGAGAGCAGATAGACAACCTGAAAGACATAGCTCTTGA 1085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114507443145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5