BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg353606

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G32200.1 | Symbols: ASY2 | DNA-binding HORMA family protein ...   363    9e-100
  AT1G67370.1 | Symbols: ASY1, ATASY1 | DNA-binding HORMA family ...   283    7e-76 


> AT4G32200.1 | Symbols: ASY2 | DNA-binding HORMA family protein 
| chr4:15548840-15555094 FORWARD LENGTH=4332
Length=4332

 Score =  363 bits (196),  Expect = 9e-100
 Identities = 258/287 (90%), Gaps = 7/287 (2%)
 Strand=Plus/Plus

Query  11   ACACCGAGCAGGAATCTTCGCTCGTTTTGACTAGGGAATTGCTCCGTACTGCCATCTTCA  70
            ||| ||||||| ||   |||||| ||||||||| ||||||||||||||||||||||||||
Sbjct  20   ACAACGAGCAGCAA---TCGCTCATTTTGACTACGGAATTGCTCCGTACTGCCATCTTCA  76

Query  71   ACATCAGTTACATCAGAGGCCTCTTTCCCGTGAAGTATTTC-AGAAATATATCGGTTCCT  129
            | ||||||||||||||||||||||||||||||  ||||||| ||  |||| |||||||||
Sbjct  77   ATATCAGTTACATCAGAGGCCTCTTTCCCGTGCGGTATTTCAAG-GATATGTCGGTTCCT  135

Query  130  GCTTTAGATATGAAGATGAAGAAGCTAATGCCTATGGACGCTGAATCACGCCGATTGATT  189
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  136  GCTTTAGATCTGAAGATGAAGAAGCTAATGCCTATGGACGCTGAATCACGCCGATTGATT  195

Query  190  GGCTGGGTGGAGAAAAGAGTCTACGATGCCCTGCAGAAGAAACACCTGAAGACA-CTTAT  248
            |||||| |||||||| | ||||||||||||||||| |||||||||||||| | | || ||
Sbjct  196  GGCTGGATGGAGAAAGGGGTCTACGATGCCCTGCATAAGAAACACCTGAAAA-AGCTGAT  254

Query  249  GTTCTACATCTGTGAAACAGTAGAGGGTCCGATGGTTGAGGAATACA  295
             |||||||| |||||||||||||| |||||  || ||||||||||||
Sbjct  255  ATTCTACATATGTGAAACAGTAGATGGTCCCTTGATTGAGGAATACA  301


> AT1G67370.1 | Symbols: ASY1, ATASY1 | DNA-binding HORMA family 
protein | chr1:25239117-25243837 REVERSE LENGTH=2145
Length=2145

 Score =  283 bits (153),  Expect = 7e-76
 Identities = 247/291 (85%), Gaps = 11/291 (4%)
 Strand=Plus/Plus

Query  12   CACCGAGCAGGAATCTTCGC-TCGTTTTGACTAGGGAA-TTGCTCCGTACTGCCATCTTC  69
            ||| ||||||| | | |||| || || |||||| | || ||||| |||| ||| ||||||
Sbjct  160  CACTGAGCAGG-A-C-TCGCTTC-TTCTGACTA-GAAATTTGCTTCGTATTGCTATCTTC  214

Query  70   AACATCAGTTACATCAGAGGCCTCTTTCCCGTGAAGTATTTCAGA-AATATATCGGTTCC  128
            ||||| |||||||||||||| |||||||| | ||||||||||| |  ||| |||||||||
Sbjct  215  AACATAAGTTACATCAGAGGACTCTTTCCTGAGAAGTATTTCA-ACGATAAATCGGTTCC  273

Query  129  TGCTTTAGATATGAAGATGAAGAAGCTAATGCCTATGGACGCTGAATCACGCCGATTGAT  188
            |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct  274  TGCTTTAGATATGAAGATTAAGAAGCTAATGCCTATGGACGCTGAATCTCGCCGATTAAT  333

Query  189  TGGCTGGGTGGAGAAAAGAGTCTACGATGCCCTGCAGAAGAAACACCTGAAGACACTTAT  248
            ||  ||| |||||||| ||||||||||||| || |||| |||| |  ||||||| || ||
Sbjct  334  TGATTGGATGGAGAAAGGAGTCTACGATGCGCTTCAGAGGAAATATTTGAAGACGCTCAT  393

Query  249  GTTCTA-CATCTGTGAAACAGTAGAGGGTCCGATGGTTGAGGAATACACAT  298
            |||| | ||| |||||||| || || ||||||||| ||||||||||| |||
Sbjct  394  GTTC-AGCATATGTGAAACTGTTGATGGTCCGATGATTGAGGAATACTCAT  443



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17945586393


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5