BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg353606 Length=381 Score E Sequences producing significant alignments: (Bits) Value AT4G32200.1 | Symbols: ASY2 | DNA-binding HORMA family protein ... 363 9e-100 AT1G67370.1 | Symbols: ASY1, ATASY1 | DNA-binding HORMA family ... 283 7e-76 > AT4G32200.1 | Symbols: ASY2 | DNA-binding HORMA family protein | chr4:15548840-15555094 FORWARD LENGTH=4332 Length=4332 Score = 363 bits (196), Expect = 9e-100 Identities = 258/287 (90%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 11 ACACCGAGCAGGAATCTTCGCTCGTTTTGACTAGGGAATTGCTCCGTACTGCCATCTTCA 70 ||| ||||||| || |||||| ||||||||| |||||||||||||||||||||||||| Sbjct 20 ACAACGAGCAGCAA---TCGCTCATTTTGACTACGGAATTGCTCCGTACTGCCATCTTCA 76 Query 71 ACATCAGTTACATCAGAGGCCTCTTTCCCGTGAAGTATTTC-AGAAATATATCGGTTCCT 129 | |||||||||||||||||||||||||||||| ||||||| || |||| ||||||||| Sbjct 77 ATATCAGTTACATCAGAGGCCTCTTTCCCGTGCGGTATTTCAAG-GATATGTCGGTTCCT 135 Query 130 GCTTTAGATATGAAGATGAAGAAGCTAATGCCTATGGACGCTGAATCACGCCGATTGATT 189 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 136 GCTTTAGATCTGAAGATGAAGAAGCTAATGCCTATGGACGCTGAATCACGCCGATTGATT 195 Query 190 GGCTGGGTGGAGAAAAGAGTCTACGATGCCCTGCAGAAGAAACACCTGAAGACA-CTTAT 248 |||||| |||||||| | ||||||||||||||||| |||||||||||||| | | || || Sbjct 196 GGCTGGATGGAGAAAGGGGTCTACGATGCCCTGCATAAGAAACACCTGAAAA-AGCTGAT 254 Query 249 GTTCTACATCTGTGAAACAGTAGAGGGTCCGATGGTTGAGGAATACA 295 |||||||| |||||||||||||| ||||| || |||||||||||| Sbjct 255 ATTCTACATATGTGAAACAGTAGATGGTCCCTTGATTGAGGAATACA 301 > AT1G67370.1 | Symbols: ASY1, ATASY1 | DNA-binding HORMA family protein | chr1:25239117-25243837 REVERSE LENGTH=2145 Length=2145 Score = 283 bits (153), Expect = 7e-76 Identities = 247/291 (85%), Gaps = 11/291 (4%) Strand=Plus/Plus Query 12 CACCGAGCAGGAATCTTCGC-TCGTTTTGACTAGGGAA-TTGCTCCGTACTGCCATCTTC 69 ||| ||||||| | | |||| || || |||||| | || ||||| |||| ||| |||||| Sbjct 160 CACTGAGCAGG-A-C-TCGCTTC-TTCTGACTA-GAAATTTGCTTCGTATTGCTATCTTC 214 Query 70 AACATCAGTTACATCAGAGGCCTCTTTCCCGTGAAGTATTTCAGA-AATATATCGGTTCC 128 ||||| |||||||||||||| |||||||| | ||||||||||| | ||| ||||||||| Sbjct 215 AACATAAGTTACATCAGAGGACTCTTTCCTGAGAAGTATTTCA-ACGATAAATCGGTTCC 273 Query 129 TGCTTTAGATATGAAGATGAAGAAGCTAATGCCTATGGACGCTGAATCACGCCGATTGAT 188 |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct 274 TGCTTTAGATATGAAGATTAAGAAGCTAATGCCTATGGACGCTGAATCTCGCCGATTAAT 333 Query 189 TGGCTGGGTGGAGAAAAGAGTCTACGATGCCCTGCAGAAGAAACACCTGAAGACACTTAT 248 || ||| |||||||| ||||||||||||| || |||| |||| | ||||||| || || Sbjct 334 TGATTGGATGGAGAAAGGAGTCTACGATGCGCTTCAGAGGAAATATTTGAAGACGCTCAT 393 Query 249 GTTCTA-CATCTGTGAAACAGTAGAGGGTCCGATGGTTGAGGAATACACAT 298 |||| | ||| |||||||| || || ||||||||| ||||||||||| ||| Sbjct 394 GTTC-AGCATATGTGAAACTGTTGATGGTCCGATGATTGAGGAATACTCAT 443 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17945586393 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5