BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353618
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32620.2 | Symbols: | Enhancer of polycomb-like transcripti... 366 6e-101
> AT4G32620.2 | Symbols: | Enhancer of polycomb-like transcription
factor protein | chr4:15731508-15737272 FORWARD LENGTH=4928
Length=4928
Score = 366 bits (198), Expect = 6e-101
Identities = 249/272 (92%), Gaps = 10/272 (4%)
Strand=Plus/Plus
Query 13 CATAGGAATCACCAAAACAAGTTGCAAAGAATCAATGGGAAGAGGAACACGAGTGGACGA 72
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||
Sbjct 4507 CATAGGAATCACCAAAACAAGTCGCAAAGAATCAATGGGAAGAGGAATACGAGTGAACGA 4566
Query 73 TGGGATGCAGGCTATTCTGAATGCCCCAGTTCCAGTCTTGTCTGTTACTCCAACGGATCT 132
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 4567 TGGGATGCAGGCTATTCTGAATGCCCCAGTTCCAATCTTGTCTGTTACTCCAACGGATCT 4626
Query 133 CAGCTTCATGATCTGGAAG-AATTACAGAACAGTACAGATATTGATGAGTACAAATTGAG 191
|||| || |||| |||||| ||| || ||| |||||||| |||||||||||||||||| |
Sbjct 4627 CAGCGTCCTGATGTGGAAGGAAT-ACGGAATAGTACAGACATTGATGAGTACAAATTGCG 4685
Query 192 AGATGGAGCTGGTGCTGCAAGGCG--C-T----TT-GGCGAAGCTCAAGCGAGAAAGAGC 243
||||| |||||||||||||||||| | | || ||||||||||||||| ||||||||
Sbjct 4686 AGATGCAGCTGGTGCTGCAAGGCGAGCATGCGCTTTGGCGAAGCTCAAGCGGGAAAGAGC 4745
Query 244 AGAGAGTTTGAGGTACAAAGCAGATCTAGCGA 275
||||||||||||||||||||||||||||||||
Sbjct 4746 AGAGAGTTTGAGGTACAAAGCAGATCTAGCGA 4777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15834340935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5