BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353621
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32090.1 | Symbols: | Beta-1,3-N-Acetylglucosaminyltransfer... 571 1e-162
AT4G32080.1 | Symbols: | unknown protein; Has 7 Blast hits to ... 316 7e-86
> AT4G32090.1 | Symbols: | Beta-1,3-N-Acetylglucosaminyltransferase
family protein | chr4:15509990-15510820 REVERSE LENGTH=375
Length=375
Score = 571 bits (309), Expect = 1e-162
Identities = 354/376 (94%), Gaps = 2/376 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTTTGCTCTTAAATGTTTTGTTGTTTTTGTTCTTCTCTCTATGGTTTCTCAAGGA 60
|||||||||||||||||||||||||||||| || |||||||||||||||| ||||| |||
Sbjct 1 ATGGCGTTTGCTCTTAAATGTTTTGTTGTTGTTCTTCTTCTCTCTATGGTCTCTCATGGA 60
Query 61 CTGTGCCACTGCACTTTTGGTAAGATCCGGATCGGAGCGGTGAGGACAGGGAGAGAAATC 120
||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||||||||
Sbjct 61 CTGTGCCTTTGCACTTTTGGCAAGATCCAGATCGGAGCGGTGAGGACAGGAAGAGAAATC 120
Query 121 -GCTGGACAGCCGGAGTGGAAAGTGACGGTAACCAACACGTGCAATTGTTTTCAGAAGCA 179
|| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GGC-GGGCAGCCGGAGTGGAAAGTGACGGTAATCAACACGTGCAATTGTTTTCAGAAGCA 179
Query 180 CGTGACTCTGTCTTGCGGAGGGTTTGTTCCTGCGAAGCCTGTCAAGCCATCGCTGCTTCA 239
||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 180 CGTGACTCTATCTTGCGGAGGGTTTGCTCCTGCGAAGCCTGTCAAGCCATTGCTGCTTCA 239
Query 240 GCCACAAGGAAACACGTGTCTTCTGATTAAAGGAGCATCTTTGCCAGCTGGCGCCACCGC 299
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 240 GCCACAAGGAAACACGTGTCTTATGATTAAAGGAGCAGCTTTGCCAGCTGGCGCCACCGC 299
Query 300 TCAGTTCACTTACGCCGGTCAGCCTTACATCTTCAGACCCGTTGGTTCCATGGTCGACCC 359
||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 TCAGTTCACATACGCCGGCCAGCCTTACATCTTCAGACCCGTTGGTTCCAAGGTCGACCC 359
Query 360 AAGTTGCAAGAATTGA 375
|||||||| |||||||
Sbjct 360 AAGTTGCACGAATTGA 375
> AT4G32080.1 | Symbols: | unknown protein; Has 7 Blast hits to
7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:15508231-15509111 REVERSE LENGTH=881
Length=881
Score = 316 bits (171), Expect = 7e-86
Identities = 268/315 (85%), Gaps = 6/315 (2%)
Strand=Plus/Plus
Query 57 AGGACTGTGCCACTGCACTTTTGGTAAGATCCGGATC-GGAGCGGTGAGGACAGGGAGAG 115
|||| |||||| ||||||||| || | |||| |||| ||| |||| ||||| |||| ||
Sbjct 365 AGGAATGTGCCGCTGCACTTTCGGCGACATCCAGATCGGGA-CGGTAAGGACCGGGAAAG 423
Query 116 AAATCGCTGGACAGCCGGAGTGGAAAGTGACGGTAACCAACACGTGCAATTGTTTTCAGA 175
||||| | ||||| ||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 424 AAATCTCCGGACAACCGGAGTGGAAAGTGACGGTAACCAACACGTGCAAGTGTCTGCAGA 483
Query 176 AGCACGTGACTCTGTCTTGCGGAGGGTTTGTTCCTGCGAAGCCTGTCAAGCCATCGCTGC 235
|||||||||||||||||||||||||||||| ||||| |||||||||| |||||| ||| |
Sbjct 484 AGCACGTGACTCTGTCTTGCGGAGGGTTTGCTCCTGTGAAGCCTGTCGAGCCATGGCTAC 543
Query 236 TTCAGCCACAAGGAAACACGTGTCTTCTGATTAAAGGAGCAT-CTTTGCCAGCTGGCGCC 294
| | ||||| ||||||| |||||||||||| ||||||| | |||||||||||||||||
Sbjct 544 TGCTCCCACAGGGAAACAGGTGTCTTCTGATCAAAGGAG-AGGCTTTGCCAGCTGGCGCC 602
Query 295 ACCGCTCAGTTCACTTACGCCGGTC-AGCCTTACATCTTCAGACCCGTTGGTTCCATGGT 353
| || |||||| ||||||||| | |||||||||||||||||| | | ||||| | ||
Sbjct 603 TCTGCAGAGTTCAGTTACGCCGG-CGAGCCTTACATCTTCAGACTCATCGGTTCGACCGT 661
Query 354 CGACCCAAGTTGCAA 368
||| ||||| |||||
Sbjct 662 CGATCCAAGCTGCAA 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17643979899
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5