BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353622
Length=384
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32080.1 | Symbols: | unknown protein; Has 7 Blast hits to ... 512 9e-145
> AT4G32080.1 | Symbols: | unknown protein; Has 7 Blast hits to
7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:15508231-15509111 REVERSE LENGTH=881
Length=881
Score = 512 bits (277), Expect = 9e-145
Identities = 311/328 (95%), Gaps = 0/328 (0%)
Strand=Plus/Plus
Query 57 AGGAATGTGCCGCTGCACTTTCGGCGACATCCAGATCGGGGCGGTAAGGACCGGGAGAGA 116
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 365 AGGAATGTGCCGCTGCACTTTCGGCGACATCCAGATCGGGACGGTAAGGACCGGGAAAGA 424
Query 117 AATCGCCGGACAACCGGAGTGGAAAGTGACTGTAATCAACACGTGCAAGTGTCTTCAGAA 176
|||| ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 425 AATCTCCGGACAACCGGAGTGGAAAGTGACGGTAACCAACACGTGCAAGTGTCTGCAGAA 484
Query 177 GCACGTGACTCTGTCTTGCGGAGGGTTTGCTCCTGTGAAGCGTGTCGAGCCATGGCTACT 236
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 485 GCACGTGACTCTGTCTTGCGGAGGGTTTGCTCCTGTGAAGCCTGTCGAGCCATGGCTACT 544
Query 237 GCTCCCACAGGGAAACACGTGTCTTCTGATCAAAGGAGAGGCTTTGCCAGCTGGCGCCGA 296
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 545 GCTCCCACAGGGAAACAGGTGTCTTCTGATCAAAGGAGAGGCTTTGCCAGCTGGCGCCTC 604
Query 297 TGCTGAGTTCAGTTACGCCGGCGAGCCTTACATTTTCAGACCCATAGGTTCGACCGTCGA 356
||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||
Sbjct 605 TGCAGAGTTCAGTTACGCCGGCGAGCCTTACATCTTCAGACTCATCGGTTCGACCGTCGA 664
Query 357 TCCAAGCTGCAAGAATTTGCTGTTATAA 384
|||||||||||| || | ||||||||||
Sbjct 665 TCCAAGCTGCAATAAATCGCTGTTATAA 692
Score = 87.9 bits (47), Expect = 6e-17
Identities = 56/60 (93%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 1 ATGGCGTTTGCTCTTAAATATTTTGTTGTTATTT-TTCTTTTCTCTATGGTTTCTCAAGG 59
|||||||||||||||||||||||||||||| ||| ||||| |||||||||| ||||||||
Sbjct 10 ATGGCGTTTGCTCTTAAATATTTTGTTGTT-TTTCTTCTTCTCTCTATGGTCTCTCAAGG 68
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18096389640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5